Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,980,019 T→C E62E (GAA→GAG araE ← low‑affinity L‑arabinose transport system proton symport protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,980,0190TC99.6% 900.5 / ‑5.5 277E62E (GAA→GAGaraElow‑affinity L‑arabinose transport system proton symport protein
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (126/150);  total (126/151)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 281 total aligned reads displayed.

AGGCTGTATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCC  >  NC_000913/2979930‑2980108
                                                                                         |                                                                                         
aGGCTGTATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTcc                                                                                        >  2:800306/1‑93 (MQ=255)
 ggCTGTATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCt                                                                                       >  1:5442752/1‑93 (MQ=255)
   cTGTATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGc                                                                                     <  1:5941470/93‑1 (MQ=255)
   cTGTATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGc                                                                                     >  1:1997900/1‑93 (MQ=255)
     gTATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCaa                                                                                   >  1:5755827/1‑93 (MQ=255)
     gTATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCaa                                                                                   >  1:3084377/1‑93 (MQ=255)
      tATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCaaa                                                                                  <  1:6302444/93‑1 (MQ=255)
       aTTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAAc                                                                                 <  1:63807/93‑1 (MQ=255)
       aTTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGAACCGAGCATCATGCTACTAACCACCCACTCCTGCAAAc                                                                                 >  2:6163408/1‑93 (MQ=255)
         ttACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGa                                                                               <  1:2015431/93‑1 (MQ=255)
          tACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGAc                                                                              <  2:2153618/93‑1 (MQ=255)
           actccccAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACt                                                                             <  1:4040850/90‑1 (MQ=255)
           aCGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACt                                                                             <  2:2756182/93‑1 (MQ=255)
             gCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTgg                                                                           <  1:1225492/93‑1 (MQ=255)
               cccAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTc                                                                         >  2:4433332/1‑93 (MQ=255)
                ccAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCa                                                                        >  1:1810931/1‑93 (MQ=255)
                ccAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCa                                                                        <  1:6434072/93‑1 (MQ=255)
                 cAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAg                                                                       >  2:4612688/1‑93 (MQ=255)
                   ggCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGca                                                                     >  2:82448/1‑93 (MQ=255)
                     cGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGcaca                                                                   <  1:1058165/93‑1 (MQ=255)
                      ggAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACaa                                                                  <  1:2148706/93‑1 (MQ=255)
                      ggAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACaa                                                                  >  1:848505/1‑93 (MQ=255)
                       gAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACaaa                                                                 <  2:890624/93‑1 (MQ=255)
                       gAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACaaa                                                                 <  2:3984331/93‑1 (MQ=255)
                        aaCGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAg                                                                <  2:1467680/93‑1 (MQ=255)
                         aCGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGt                                                               >  1:148022/1‑93 (MQ=255)
                         aCGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGt                                                               <  2:3225706/93‑1 (MQ=255)
                           gACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGa                                                             <  1:4427922/93‑1 (MQ=255)
                           gACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGa                                                             >  2:6550360/1‑93 (MQ=255)
                           gACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGa                                                             <  1:3327667/93‑1 (MQ=255)
                           gACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGa                                                             <  2:5956128/93‑1 (MQ=255)
                            aCAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGAt                                                            >  1:423295/1‑93 (MQ=255)
                            aCAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGAt                                                            <  1:1526259/93‑1 (MQ=255)
                               gCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCgg                                                         <  2:1050137/93‑1 (MQ=255)
                               gCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCgg                                                         >  2:3033662/1‑93 (MQ=255)
                                 cAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTa                                                       >  1:3223174/1‑93 (MQ=255)
                                 cAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTa                                                       <  2:4211551/93‑1 (MQ=255)
                                  aaCCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTaa                                                      >  2:6008548/1‑93 (MQ=255)
                                  aaCCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTaa                                                      >  1:5834565/1‑93 (MQ=255)
                                   aCCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAAt                                                     <  2:663876/93‑1 (MQ=255)
                                    ccATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATg                                                    >  2:1768600/1‑93 (MQ=255)
                                     cATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGa                                                   >  2:1736627/1‑93 (MQ=255)
                                      aTTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCCCTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGaa                                                  <  1:2673798/93‑1 (MQ=255)
                                      aTTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGaa                                                  >  2:6291334/1‑93 (MQ=255)
                                      aTTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGaa                                                  >  2:95603/1‑93 (MQ=255)
                                       ttAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAAc                                                 >  2:5132896/1‑93 (MQ=255)
                                          aaCAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGc                                              >  2:2638410/1‑93 (MQ=255)
                                          aaCAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGc                                              >  2:675557/1‑93 (MQ=255)
                                           aCAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCa                                             >  2:2239207/1‑93 (MQ=255)
                                           aCAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCa                                             <  1:1903548/93‑1 (MQ=255)
                                            cAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCaa                                            <  2:1211289/93‑1 (MQ=255)
                                             aGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAAc                                           <  1:4332228/93‑1 (MQ=255)
                                             aGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAAc                                           >  2:3121860/1‑93 (MQ=255)
                                              gcgcACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACg                                          >  1:5705696/1‑93 (MQ=255)
                                               cgcACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGGCTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGc                                         <  1:4662184/93‑1 (MQ=255)
                                               cgcACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGc                                         <  2:1613912/93‑1 (MQ=255)
                                                gcACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCt                                        >  1:3713991/1‑93 (MQ=255)
                                                 cACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTc                                       <  2:1648857/93‑1 (MQ=255)
                                                  aCCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTcc                                      >  2:1703598/1‑93 (MQ=255)
                                                  aCCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTcc                                      <  1:6098757/93‑1 (MQ=255)
                                                  aCCAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTcc                                      >  1:462145/1‑93 (MQ=255)
                                                    cAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCgg                                    <  2:4744386/93‑1 (MQ=255)
                                                    cAATTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCgg                                    <  1:562140/93‑1 (MQ=255)
                                                     aaTTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGc                                   >  2:3694133/1‑93 (MQ=255)
                                                      aTTGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCg                                  >  1:6224779/1‑93 (MQ=255)
                                                       ttGCTGCACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGa                                 >  2:2321110/1‑93 (MQ=255)
                                                        tgctgcACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGAt                                <  1:3986684/93‑1 (MQ=255)
                                                         gctgcACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGAtt                               <  2:2715515/93‑1 (MQ=255)
                                                          ctgcACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTa                              <  2:1324194/93‑1 (MQ=255)
                                                          ctgcACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTa                              <  2:3405001/93‑1 (MQ=255)
                                                           tgcACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTAc                             >  2:2746624/1‑93 (MQ=255)
                                                           tgcACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTAc                             <  2:6124770/93‑1 (MQ=255)
                                                           tgcACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTAc                             >  1:5640009/1‑93 (MQ=255)
                                                             cACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGc                           <  2:2959170/93‑1 (MQ=255)
                                                             cACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGc                           <  1:5222977/93‑1 (MQ=255)
                                                             cACCGAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGc                           <  1:5492130/93‑1 (MQ=255)
                                                                 gAGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGat                       <  1:1427108/93‑1 (MQ=255)
                                                                  aGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGata                      <  2:3522283/93‑1 (MQ=255)
                                                                  aGCATCATGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGata                      <  1:6641622/93‑1 (MQ=255)
                                                                    catcatGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATc                    <  1:3808687/93‑1 (MQ=255)
                                                                      tcatGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCaa                  >  1:245602/1‑93 (MQ=255)
                                                                        atGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGa                >  1:1114314/1‑93 (MQ=255)
                                                                        atGCTACTAACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGa                >  2:5885071/1‑93 (MQ=255)
                                                                             actaACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCaaa           <  2:5280572/93‑1 (MQ=255)
                                                                              ctaACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAAt          <  2:5432695/93‑1 (MQ=255)
                                                                              ctaACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAAt          >  1:944645/1‑93 (MQ=255)
                                                                              ctaACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTAAGCCGATATCAATACCatat          >  2:3921928/1‑93 (MQ=255)
                                                                              ctaACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGCAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAAt          >  1:1306073/1‑93 (MQ=255)
                                                                               taACCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATa         <  1:682369/93‑1 (MQ=255)
                                                                                aaCCACCCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATaa        >  1:4897652/1‑93 (MQ=255)
                                                                                 accaccCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAAc       <  2:2601179/93‑1 (MQ=255)
                                                                                  ccacccacTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACa      <  1:4185320/93‑1 (MQ=255)
                                                                                   caccCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACaa     >  2:3305077/1‑93 (MQ=255)
                                                                                   caccCACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACaa     <  2:4116160/93‑1 (MQ=255)
                                                                                     cccACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATc   <  1:2928108/93‑1 (MQ=255)
                                                                                     cccACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATc   >  1:163586/1‑93 (MQ=255)
                                                                                     cccACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATc   >  2:5613886/1‑93 (MQ=255)
                                                                                      ccACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATcc  >  2:6422504/1‑93 (MQ=255)
                                                                                      ccACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATcc  <  2:5793043/93‑1 (MQ=255)
                                                                                      ccACTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCCGCGATTACGCCGATATCAAGACCAAATAACAATcc  >  2:4793963/1‑93 (MQ=255)
                                                                                         |                                                                                         
AGGCTGTATTTACGCCCCAGGCGGAACGACAGCCAACCATTAAACAGCGCACCAATTGCTGCACCGAGCATCATGCTACTAACCACCCATTCCTGCAAACGACTGGTCAGCACAAAGTGATCGGTAATGAACGGCAACGCTCCGGCGATTACGCCGATATCAAGACCAAATAACAATCC  >  NC_000913/2979930‑2980108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: