BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	409,218	A→G	V9A (GTT→GCT)	yaiD ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	409,218	0	A	G	100.0%	765.5 / NA	232	V9A (GTT→GCT)	yaiD	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (114/118); total (114/118)

Only 100 of 234 total aligned reads displayed.

TCCTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAACCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCTTGC  >  NC_000913/409128‑409307

tCCTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGcc                                                                                         <  1:3173325/93‑1 (MQ=255)

tCCTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGcc                                                                                         <  1:273709/93‑1 (MQ=255)

tCCTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGcc                                                                                         <  2:373796/93‑1 (MQ=255)

tCCTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGcc                                                                                         <  2:5979232/93‑1 (MQ=255)

  cTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCAt                                                                                       >  2:5544574/1‑93 (MQ=255)

   tGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCAtt                                                                                      <  2:2469711/93‑1 (MQ=255)

   tGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCAtt                                                                                      >  1:3357463/1‑93 (MQ=255)

    ggCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTa                                                                                     >  2:4351793/1‑93 (MQ=255)

     gCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTaa                                                                                    <  2:4726413/93‑1 (MQ=255)

      cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTaaa                                                                                   <  1:2065946/93‑1 (MQ=255)

      cTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTaaa                                                                                   <  1:3664822/93‑1 (MQ=255)

      atGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTaaa                                                                                   <  2:1790807/92‑1 (MQ=255)

       tGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAAt                                                                                  <  2:2200110/93‑1 (MQ=255)

       tGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAAt                                                                                  <  2:6451963/93‑1 (MQ=255)

            cATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTg                                                                             >  2:2357164/1‑93 (MQ=255)

            cATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTg                                                                             >  1:4313026/1‑93 (MQ=255)

             aTGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGa                                                                            >  2:6216999/1‑93 (MQ=255)

               ggggTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAAc                                                                          <  2:5033234/93‑1 (MQ=255)

                gtgTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAAcc                                                                         <  1:2264386/91‑1 (MQ=255)

                 gctAAATGCCATCGAGTCTAGCTGTTTTTCCATCTCTACTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACca                                                                        <  1:337951/91‑1 (MQ=255)

                  gTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACcac                                                                       >  2:4575495/1‑93 (MQ=255)

                  gTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACcac                                                                       <  2:5783657/93‑1 (MQ=255)

                   tAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACcaca                                                                      <  1:5072188/93‑1 (MQ=255)

                      aTGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCa                                                                   <  1:6397924/93‑1 (MQ=255)

                      aTGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCa                                                                   >  2:740190/1‑93 (MQ=255)

                        gCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATg                                                                 <  1:3859991/93‑1 (MQ=255)

                        gCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATg                                                                 >  2:1281336/1‑93 (MQ=255)

                         ccATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGa                                                                <  2:6022058/93‑1 (MQ=255)

                         ccATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGa                                                                <  1:3305670/93‑1 (MQ=255)

                         ccATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGa                                                                <  2:2017289/93‑1 (MQ=255)

                            tCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATaa                                                             <  2:5801560/93‑1 (MQ=255)

                            tCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATaa                                                             >  1:4596785/1‑93 (MQ=255)

                            tCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATaa                                                             <  2:4272768/93‑1 (MQ=255)

                            tCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATaa                                                             <  2:3181282/93‑1 (MQ=255)

                              gAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAAtt                                                           <  2:4132883/93‑1 (MQ=255)

                              gAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAAtt                                                           >  2:3915750/1‑93 (MQ=255)

                              gAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAAtt                                                           >  2:6286078/1‑93 (MQ=255)

                                ggCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTc                                                         >  1:6224557/1‑93 (MQ=255)

                                ggCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTc                                                         >  2:1066682/1‑93 (MQ=255)

                                  cTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCa                                                       >  1:495623/1‑93 (MQ=255)

                                  cTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCa                                                       <  1:1723890/93‑1 (MQ=255)

                                  cTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCa                                                       <  1:2813168/93‑1 (MQ=255)

                                  cTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCa                                                       <  1:1608962/93‑1 (MQ=255)

                                   tAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCAc                                                      <  1:5265902/93‑1 (MQ=255)

                                    aGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACg                                                     >  1:6345153/1‑93 (MQ=255)

                                       tGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGcc                                                  >  1:4923680/1‑93 (MQ=255)

                                        gTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCt                                                 <  2:2283176/93‑1 (MQ=255)

                                        gTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCt                                                 <  1:6610517/93‑1 (MQ=255)

                                        gTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCt                                                 <  2:3064008/93‑1 (MQ=255)

                                        gTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCt                                                 <  2:4243565/93‑1 (MQ=255)

                                        gTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCt                                                 <  2:5401340/93‑1 (MQ=255)

                                           tttCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGt                                              <  1:536816/93‑1 (MQ=255)

                                             tCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCg                                            >  2:2412546/1‑93 (MQ=255)

                                              ccATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGt                                           >  2:355864/1‑93 (MQ=255)

                                               cATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGtt                                          >  2:2574323/1‑93 (MQ=255)

                                               cATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGtt                                          <  2:2443935/93‑1 (MQ=255)

                                               cATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGtt                                          >  1:5313418/1‑93 (MQ=255)

                                                aTCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTa                                         >  2:2936126/1‑93 (MQ=255)

                                                  ctctTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTaaa                                       <  1:1480513/93‑1 (MQ=255)

                                                    cttctGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAAtt                                     >  1:934285/1‑93 (MQ=255)

                                                      tctGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTa                                   <  2:894807/93‑1 (MQ=255)

                                                       ctGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAg                                  <  2:1077347/93‑1 (MQ=255)

                                                        tGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGc                                 <  1:1010744/93‑1 (MQ=255)

                                                        tGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGc                                 <  2:3227093/93‑1 (MQ=255)

                                                         gCACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCg                                >  1:6101065/1‑93 (MQ=255)

                                                          cACGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCgg                               >  2:1385581/1‑93 (MQ=255)

                                                           aCGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCggg                              <  1:5476791/93‑1 (MQ=255)

                                                            cGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGc                             >  1:763884/1‑93 (MQ=255)

                                                            cGCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGc                             >  2:5948194/1‑93 (MQ=255)

                                                             gCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCa                            <  1:5178545/93‑1 (MQ=255)

                                                             gCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCa                            >  2:3810096/1‑93 (MQ=255)

                                                             gCAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCa                            <  1:2497835/93‑1 (MQ=255)

                                                              cAGCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCAt                           >  1:2839066/1‑93 (MQ=255)

                                                                gCGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGa                         <  1:1099049/93‑1 (MQ=255)

                                                                 cGAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGAt                        >  2:3716529/1‑93 (MQ=255)

                                                                  gAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATa                       >  1:4468146/1‑93 (MQ=255)

                                                                  gAAATCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATa                       >  2:5690885/1‑93 (MQ=255)

                                                                   aaaTCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATaa                      >  1:2442280/1‑93 (MQ=255)

                                                                   aaaTCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATaa                      <  1:2890054/93‑1 (MQ=255)

                                                                    aaTCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAAc                     >  2:161732/1‑93 (MQ=255)

                                                                     aTCTCGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACg                    >  1:3046231/1‑93 (MQ=255)

                                                                        tcGCGGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAAAGAAt                 >  1:1542002/1‑93 (MQ=255)

                                                                          gcgGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTg               <  1:3550570/93‑1 (MQ=255)

                                                                           cgGCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGt              <  2:5595903/93‑1 (MQ=255)

                                                                             gCTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcg            <  2:2649231/93‑1 (MQ=255)

                                                                              cTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcgg           >  1:5861757/1‑93 (MQ=255)

                                                                              cTAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcgg           <  1:1312252/93‑1 (MQ=255)

                                                                               tAAGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcggc          <  2:4656326/93‑1 (MQ=255)

                                                                                aaGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcggcg         >  2:5112960/1‑93 (MQ=255)

                                                                                aaGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcggcg         >  1:1395475/1‑93 (MQ=255)

                                                                                 aGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcggcgg        >  2:6561953/1‑93 (MQ=255)

                                                                                 aGACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTcggcgc        >  2:1307457/1‑92 (MQ=255)

                                                                                  gACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCggcggc       <  1:3098259/93‑1 (MQ=255)

                                                                                  gACGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCggcggc       >  1:4782367/1‑93 (MQ=255)

                                                                                   aCGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGcc      <  1:4136527/93‑1 (MQ=255)

                                                                                    cGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCt     <  1:6453602/93‑1 (MQ=255)

                                                                                    cGGTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCt     <  1:4496681/93‑1 (MQ=255)

                                                                                     ggTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCtt    >  1:1777644/1‑93 (MQ=255)

                                                                                     ggTAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCtt    >  1:4170150/1‑93 (MQ=255)

                                                                                       tAAGCCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCTTGc  >  1:2655424/1‑93 (MQ=255)

TCCTGGCTGCCGCATGGGGTAAATGCCATCGAGGCTAGCTGTTTTTCCATCTCTTCTGCACGCAGCGAAATCTCGCGGCTAAGACGGTAAACCATTAAATTTTTGAACCACAGCATGATAATTTCCACGGCCTTGTCGTTAAATTTAGCGGGCATGATAACGAATTGTCGGCGGCCTTGC  >  NC_000913/409128‑409307

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`