BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	411,562	T→C	A76A (GCA→GCG)	araJ ←	AraJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	411,562	0	T	C	100.0%	706.1 / NA	220	A76A (GCA→GCG)	araJ	AraJ
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (119/101); total (119/101)

Only 100 of 229 total aligned reads displayed.

GCACAACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTC  >  NC_000913/411472‑411651

  acaACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCat                                                                                       >  1:1254808/1‑93 (MQ=255)

  acaACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCat                                                                                       <  1:885276/93‑1 (MQ=255)

  acaACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCat                                                                                       >  1:4970236/1‑93 (MQ=255)

  acaACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCat                                                                                       >  1:4910532/1‑93 (MQ=255)

    aaCGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCataa                                                                                     <  1:2363076/93‑1 (MQ=255)

     aCGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGAGCataat                                                                                    >  1:1168898/1‑93 (MQ=255)

      cGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCataata                                                                                   <  1:2196711/93‑1 (MQ=255)

       gCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATAc                                                                                  <  2:3693887/93‑1 (MQ=255)

        ccaccaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCCGCGCATAATACg                                                                                 >  2:1964751/1‑93 (MQ=255)

        ccaccaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACg                                                                                 >  1:4934124/1‑93 (MQ=255)

         caccaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACga                                                                                >  1:1789217/1‑93 (MQ=255)

          accaGAAACATCAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACgag                                                                               >  1:357318/1‑93 (MQ=255)

          accaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACgag                                                                               <  2:5831025/93‑1 (MQ=255)

           ccaGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACgaga                                                                              >  2:1687098/1‑93 (MQ=255)

              gAAACAACAAGATATGTTTGCGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCa                                                                           >  1:979998/1‑93 (MQ=255)

              gAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCa                                                                           >  1:5869634/1‑93 (MQ=255)

              gAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCa                                                                           >  1:6164172/1‑93 (MQ=255)

              gAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCa                                                                           <  1:1533311/93‑1 (MQ=255)

               aaaCAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCat                                                                          <  2:322994/93‑1 (MQ=255)

                aacaacAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCata                                                                         <  2:6069835/93‑1 (MQ=255)

                aacaacAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCata                                                                         <  1:3913791/93‑1 (MQ=255)

                aacaacAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCata                                                                         <  2:5005330/93‑1 (MQ=255)

                 acaacaAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCatat                                                                        <  2:6279433/93‑1 (MQ=255)

                   aacaaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGc                                                                      >  1:3634099/1‑93 (MQ=255)

                   aacaaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGc                                                                      <  2:4371183/93‑1 (MQ=255)

                    acaaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGcc                                                                     <  2:303033/93‑1 (MQ=255)

                    acaaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGcc                                                                     >  2:1954809/1‑93 (MQ=255)

                     caaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGccc                                                                    <  2:4073864/93‑1 (MQ=255)

                      aaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcg                                                                   <  1:212710/93‑1 (MQ=255)

                      aaGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcg                                                                   <  1:4786246/93‑1 (MQ=255)

                       aGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcgg                                                                  >  1:5266015/1‑93 (MQ=255)

                       aGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcgg                                                                  >  2:710860/1‑93 (MQ=255)

                        gATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATACTACGAGATCATATGccccgg                                                                 >  1:323547/1‑90 (MQ=255)

                        gATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcggc                                                                 >  1:3359941/1‑93 (MQ=255)

                        gATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcggc                                                                 >  2:4655354/1‑93 (MQ=255)

                          tatGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcggcgg                                                               >  1:4250627/1‑93 (MQ=255)

                          tatGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCcggcgg                                                               >  1:6222884/1‑93 (MQ=255)

                            tGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCa                                                             >  1:6075762/1‑93 (MQ=255)

                            tGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCa                                                             >  1:1479245/1‑93 (MQ=255)

                            tGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCCGCa                                                             >  2:2325631/1‑93 (MQ=255)

                             gTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAg                                                            <  2:3288674/93‑1 (MQ=255)

                               ttGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGa                                                          <  1:1997317/93‑1 (MQ=255)

                                tgagtgagTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGaa                                                         >  1:2823839/1‑93 (MQ=255)

                                tgagtgagTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGaa                                                         >  2:2567328/1‑93 (MQ=255)

                                 gagtgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAAt                                                        >  1:5032593/1‑93 (MQ=255)

                                 gagtgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAAt                                                        <  1:4104052/93‑1 (MQ=255)

                                 gagtgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAAt                                                        >  2:2847830/1‑93 (MQ=255)

                                 gagtgagtAGCGGCGGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAAt                                                        <  2:6488531/93‑1 (MQ=255)

                                  agtgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATc                                                       <  1:2715550/93‑1 (MQ=255)

                                   gtgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCg                                                      >  1:3830943/1‑93 (MQ=255)

                                   gtgagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCg                                                      <  2:5332169/93‑1 (MQ=255)

                                     gagtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGaa                                                    >  2:5451477/1‑93 (MQ=255)

                                       gtAGCGGCTGGAAAAGAGTGCGATGATTTGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCAGCAGGAATCGCAAt                                                  >  1:2461745/1‑93 (MQ=255)

                                       gtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAAt                                                  <  2:1818395/93‑1 (MQ=255)

                                       gtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAAt                                                  >  2:4210074/1‑93 (MQ=255)

                                       gtAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAAt                                                  <  2:3375362/93‑1 (MQ=255)

                                        tAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAAtt                                                 >  1:2282222/1‑93 (MQ=255)

                                            ggCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTa                                             >  2:4887978/1‑93 (MQ=255)

                                            ggCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTa                                             >  2:445772/1‑93 (MQ=255)

                                             gCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTAc                                            >  1:1455560/1‑93 (MQ=255)

                                             gCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTAc                                            <  1:668087/93‑1 (MQ=255)

                                             gCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTAc                                            >  1:5462855/1‑93 (MQ=255)

                                             gCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATAATATGCCCGGCGGCAGGAATCGAAATTCCTAc                                            <  1:320082/93‑1 (MQ=255)

                                                ggAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGtt                                         <  2:3474634/93‑1 (MQ=255)

                                                ggAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGtt                                         <  2:3320070/93‑1 (MQ=255)

                                                ggAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGtt                                         >  1:2689442/1‑93 (MQ=255)

                                                   aaaGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATg                                      >  2:1325271/1‑93 (MQ=255)

                                                    aaGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATgc                                     <  2:1387310/93‑1 (MQ=255)

                                                    aaGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATgc                                     >  1:186621/1‑93 (MQ=255)

                                                     agagTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATgcg                                    <  2:3986496/93‑1 (MQ=255)

                                                     agagTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATgcg                                    >  2:1102771/1‑93 (MQ=255)

                                                     agagTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATgcg                                    >  2:5138477/1‑93 (MQ=255)

                                                       agTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGcc                                  >  1:3975950/1‑93 (MQ=255)

                                                        gTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCa                                 >  1:3765151/1‑93 (MQ=255)

                                                        gTGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCa                                 >  2:209452/1‑93 (MQ=255)

                                                         tGCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAg                                >  2:4529654/1‑93 (MQ=255)

                                                          gCGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGc                               >  1:594440/1‑93 (MQ=255)

                                                           cGATGATTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCt                              >  1:5736063/1‑93 (MQ=255)

                                                            gatgatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTc                             <  2:4617536/93‑1 (MQ=255)

                                                             atgatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTcc                            <  2:2168193/93‑1 (MQ=255)

                                                              tgatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCg                           >  1:6300121/1‑93 (MQ=255)

                                                               gatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGt                          >  2:6597161/1‑93 (MQ=255)

                                                               gatTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGt                          >  1:1080013/1‑93 (MQ=255)

                                                                atTGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTg                         <  2:2419210/93‑1 (MQ=255)

                                                                 ttGGCGCACCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGa                        <  2:131225/93‑1 (MQ=255)

                                                                        aCCGACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGcc                 >  1:466525/1‑93 (MQ=255)

                                                                           gACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCAt              >  1:1874830/1‑93 (MQ=255)

                                                                           gACCACCACCCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCAt              >  1:6500682/1‑93 (MQ=255)

                                                                             ccaccaccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATaa            <  1:4459882/93‑1 (MQ=255)

                                                                              caccaccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAAt           >  2:557066/1‑93 (MQ=255)

                                                                              caccaccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAAt           <  1:7079/93‑1 (MQ=255)

                                                                              caccaccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAAt           >  2:3815987/1‑93 (MQ=255)

                                                                                ccaccCGCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGc         >  1:5554823/1‑93 (MQ=255)

                                                                                ccaccCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGc         >  2:5223310/1‑93 (MQ=255)

                                                                                  accCCCAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCa       >  2:6404102/1‑93 (MQ=255)

                                                                                   cccccAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCaa      >  1:134218/1‑93 (MQ=255)

                                                                                    ccccAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCaaa     >  2:6379470/1‑93 (MQ=255)

                                                                                    ccccAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCaaa     <  1:4763522/93‑1 (MQ=255)

                                                                                     cccAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAAt    <  2:3547140/93‑1 (MQ=255)

                                                                                       cAGCGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTc  >  1:454639/1‑93 (MQ=255)

GCACAACGCCACCAGAAACAACAAGATATGTTTGAGTGAGTAGCGGCTGGAAAAGAGTGCGATGATTGGCGCACCGACCACCACCCCCAGTGCATAATACGAGATCATATGCCCGGCGGCAGGAATCGAAATTCCTACGTTATGCGCCAGCTCCGTGAGCACGCCCATAATGCCAAATTC  >  NC_000913/411472‑411651

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`