Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 436,659 T→C E258G (GAG→GGG)  yajO ← putative NAD(P)H‑dependent xylose reductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913436,6590TC99.5% 697.2 / ‑5.0 217E258G (GAG→GGG) yajOputative NAD(P)H‑dependent xylose reductase
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (136/80);  total (137/80)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.06e-01

Only 100 of 226 total aligned reads displayed.

TCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCGCCACGCCC  >  NC_000913/436570‑436748
                                                                                          |                                                                                         
tCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCccat                                                                                        <  1:3917373/93‑1 (MQ=255)
tCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCccat                                                                                        >  1:2122684/1‑93 (MQ=255)
   cccccAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAg                                                                                     >  1:4639956/1‑93 (MQ=255)
    ccccAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGa                                                                                    >  1:4366158/1‑93 (MQ=255)
     cccAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGac                                                                                   <  1:1250149/93‑1 (MQ=255)
      ccAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGaca                                                                                  >  2:1535179/1‑93 (MQ=255)
      ccAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGaca                                                                                  >  1:1538461/1‑93 (MQ=255)
      ccAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGaca                                                                                  >  1:4003128/1‑93 (MQ=255)
      ccAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGaca                                                                                  >  1:452545/1‑93 (MQ=255)
       cAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGacac                                                                                 >  2:5345976/1‑93 (MQ=255)
         gTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCa                                                                               >  1:831344/1‑93 (MQ=255)
          ttcttcACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAg                                                                              >  1:6293574/1‑93 (MQ=255)
          ttcttcACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAg                                                                              >  1:2405257/1‑93 (MQ=255)
          ttcttcACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAg                                                                              >  1:4425710/1‑93 (MQ=255)
           tcttcACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGt                                                                             >  1:3558657/1‑93 (MQ=255)
           tcttcACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGt                                                                             <  1:4750199/93‑1 (MQ=255)
           tcttcACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGt                                                                             >  1:4914291/1‑93 (MQ=255)
            cttcACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTc                                                                            <  2:6480850/93‑1 (MQ=255)
            cttcACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTc                                                                            <  1:5845210/93‑1 (MQ=255)
              tcACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGt                                                                          <  2:6359142/93‑1 (MQ=255)
              tcACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTGCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGt                                                                          >  2:905829/1‑93 (MQ=255)
                aCTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGc                                                                        <  1:2861276/93‑1 (MQ=255)
                   gACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACCCCAGTCGCGCGGt                                                                     <  1:4340598/93‑1 (MQ=255)
                   gACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGt                                                                     >  2:6703854/1‑93 (MQ=255)
                    aCGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTa                                                                    >  2:4284071/1‑93 (MQ=255)
                     cGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAg                                                                   >  2:2065894/1‑93 (MQ=255)
                      gCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGt                                                                  >  2:3915516/1‑93 (MQ=255)
                        cTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGttt                                                                <  1:3456233/93‑1 (MQ=255)
                            tAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTcc                                                            >  2:2089805/1‑93 (MQ=255)
                             aaCCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTccc                                                           >  2:3629745/1‑93 (MQ=255)
                              aCCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTcccc                                                          <  2:5566611/93‑1 (MQ=255)
                              aCCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTcccc                                                          >  1:1486474/1‑93 (MQ=255)
                                cGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACCCCAGTCGTGCGGTAGTTTCTCCCCAc                                                        <  2:4493347/93‑1 (MQ=255)
                                cGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCAc                                                        <  2:3299472/93‑1 (MQ=255)
                                   tctGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGa                                                     >  1:5188997/1‑93 (MQ=255)
                                    ctGCGATCTGCGCGTCATTTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGa                                                     >  1:2946667/1‑93 (MQ=255)
                                     tGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGAcg                                                   <  2:5653387/93‑1 (MQ=255)
                                      gCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGAcgc                                                  >  2:5488043/1‑93 (MQ=255)
                                       cGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGAcgcg                                                 <  1:5211811/93‑1 (MQ=255)
                                        gATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGt                                                >  1:2696241/1‑93 (MQ=255)
                                        gATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGt                                                <  2:1433341/93‑1 (MQ=255)
                                         aTCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTc                                               <  2:6686512/93‑1 (MQ=255)
                                         aTCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTc                                               >  2:5159258/1‑93 (MQ=255)
                                          tCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCa                                              >  2:4047290/1‑93 (MQ=255)
                                          tCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCa                                              <  2:4886902/93‑1 (MQ=255)
                                          tCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCa                                              >  2:1135225/1‑93 (MQ=255)
                                           cTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAg                                             <  2:6099967/93‑1 (MQ=255)
                                            tGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCTCCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGa                                            <  1:1211881/93‑1 (MQ=255)
                                            tGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGa                                            <  1:361097/93‑1 (MQ=255)
                                            tGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGa                                            <  2:2271174/93‑1 (MQ=255)
                                                cgTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGc                                        <  2:4072509/93‑1 (MQ=255)
                                                cgTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGc                                        >  2:2429767/1‑93 (MQ=255)
                                                 gTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGcc                                       >  2:3449333/1‑93 (MQ=255)
                                                 gTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGcc                                       >  1:5108452/1‑93 (MQ=255)
                                                 gTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACCGcc                                       >  1:4187635/1‑93 (MQ=255)
                                                   cATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGcccc                                     >  2:3832089/1‑93 (MQ=255)
                                                   cATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGcccc                                     <  1:5896687/93‑1 (MQ=255)
                                                    aTTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCt                                    >  1:1000232/1‑93 (MQ=255)
                                                    aTTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCt                                    <  1:4988523/93‑1 (MQ=255)
                                                    aTTGTCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCt                                    <  1:3108713/93‑1 (MQ=255)
                                                      ttttCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCtt                                   >  2:5330962/1‑93 (MQ=255)
                                                         tCATCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGcc                                >  1:1967199/1‑93 (MQ=255)
                                                           aTCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAg                              <  1:3282729/93‑1 (MQ=255)
                                                           aTCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAg                              >  1:681816/1‑93 (MQ=255)
                                                            tCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGc                             <  2:4523741/93‑1 (MQ=255)
                                                            tCGCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGACAGc                             >  1:6463958/1‑93 (MQ=255)
                                                            tCGCTTTCTTTATAGAGATTTTTCCCCACCCCACCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGc                             <  2:5030007/93‑1 (MQ=255)
                                                              gCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCgg                           >  2:2786227/1‑93 (MQ=255)
                                                              gCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCgg                           >  2:3167014/1‑93 (MQ=255)
                                                              gCTTTCTTTATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCgg                           >  2:3880966/1‑93 (MQ=255)
                                                                 ttctttATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCt                        <  2:2483415/93‑1 (MQ=255)
                                                                 ttctttATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCt                        <  1:223636/93‑1 (MQ=255)
                                                                 ttctttATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCt                        >  2:1981452/1‑93 (MQ=255)
                                                                  tctttATAGAGATTTTTCCCCACCCCATTAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTc                       >  1:1654224/1‑93 (MQ=255)
                                                                   ctttATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTcc                      <  1:5423719/93‑1 (MQ=255)
                                                                   ctttATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTcc                      >  1:5990577/1‑93 (MQ=255)
                                                                    tttATAGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCa                     >  1:3482810/1‑93 (MQ=255)
                                                                       ataGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATgg                  <  1:779635/93‑1 (MQ=255)
                                                                       ataGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATgg                  >  2:4126081/1‑93 (MQ=255)
                                                                        taGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGa                 <  1:5585708/93‑1 (MQ=255)
                                                                        taGAGATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGa                 <  1:2588638/93‑1 (MQ=255)
                                                                         agagATTTTTCCCCTCCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGaa                <  2:335320/93‑1 (MQ=255)
                                                                         agagATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGaa                <  2:4615740/93‑1 (MQ=255)
                                                                         agagATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGaa                <  1:3376817/93‑1 (MQ=255)
                                                                         agagATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGaa                <  1:1717724/93‑1 (MQ=255)
                                                                         agagATTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGaa                >  1:2531682/1‑93 (MQ=255)
                                                                          gagaTTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAAt               <  1:1143969/93‑1 (MQ=255)
                                                                          gagaTTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAAt               >  2:3066913/1‑93 (MQ=255)
                                                                           agaTTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAAtt              <  2:125080/93‑1 (MQ=255)
                                                                             aTTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTAc            <  2:5725754/93‑1 (MQ=255)
                                                                             aTTTTTCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTAc            >  2:595240/1‑93 (MQ=255)
                                                                              tttttCCCCCCCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTAcc           <  2:5805833/93‑1 (MQ=255)
                                                                               ttttCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTAccc          >  1:4109387/1‑92 (MQ=255)
                                                                               ttttCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCg          >  2:3018178/1‑93 (MQ=255)
                                                                               ttttCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCg          >  2:3868384/1‑93 (MQ=255)
                                                                                 ttCCCCACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCGcc        >  2:5218602/1‑93 (MQ=255)
                                                                                   ccccaccccaTCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCGCCAc      <  2:1381803/93‑1 (MQ=255)
                                                                                    cccACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCGCCACg     >  2:617847/1‑93 (MQ=255)
                                                                                    cccACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCGCCACg     >  1:927967/1‑93 (MQ=255)
                                                                                     ccACCCCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCGCCACGc    >  2:1725269/1‑93 (MQ=255)
                                                                                          |                                                                                         
TCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGCGTCAGACGGCCCCTTGCCAGCGGGCTCCATGGAATTACCGCCACGCCC  >  NC_000913/436570‑436748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: