Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,477,281 Δ1 bp intergenic (‑391/‑29) b4256 ← / → yjgN hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,477,2790T.99.8% 2154.5 / ‑2.9 447intergenic (‑389/‑31)b4256/yjgNhypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base . (243/203);  minor base A (1/0);  total (244/203)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

Only 100 of 472 total aligned reads displayed.

TAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATAGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCT  >  NC_000913/4477184‑4477371
                                                                                               |                                                                                            
taaAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAAt                                                                                              >  2:8240671/1‑96 (MQ=255)
 aaaGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAAtt                                                                                             <  2:14195878/96‑1 (MQ=255)
 aaaGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAAtt                                                                                             >  2:6874664/1‑96 (MQ=255)
  aaGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAAttc                                                                                            <  1:1932398/96‑2 (MQ=255)
  aaGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAAttc                                                                                            >  2:8068388/1‑95 (MQ=255)
    gTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAAttcag                                                                                          <  2:2365184/96‑4 (MQ=255)
       tttGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGa                                                                                      >  2:206529/1‑96 (MQ=255)
            cAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAAtttt                                                                                 >  1:6439635/1‑96 (MQ=255)
            cAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAAtttt                                                                                 >  1:1373174/1‑96 (MQ=255)
            cAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAAtttt                                                                                 >  2:4736217/1‑96 (MQ=255)
            cAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCACGGAAtttt                                                                                 <  1:12974523/96‑1 (MQ=255)
              gacTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTa                                                                               >  1:3339034/3‑96 (MQ=255)
               ccTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTAt                                                                              >  1:9787586/1‑96 (MQ=255)
                cTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATg                                                                             <  2:8613746/96‑1 (MQ=255)
                 tATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATgg                                                                            >  2:10771793/1‑96 (MQ=255)
                   ttACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCt                                                                          <  1:13577128/96‑1 (MQ=255)
                    tACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTc                                                                         >  1:5107813/1‑96 (MQ=255)
                      cTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCaa                                                                       <  1:8215004/96‑1 (MQ=255)
                          tAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGtta                                                                   >  2:2171109/1‑96 (MQ=255)
                          tAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGtta                                                                   >  1:7271413/1‑96 (MQ=255)
                           aaGAGTATTGTAACGTGGCAGAACATTTTACTGGCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGttat                                                                  >  2:3896949/1‑96 (MQ=255)
                            agagTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGttatt                                                                 >  1:2115220/1‑96 (MQ=255)
                            agagTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGtnatt                                                                 <  2:1842439/96‑1 (MQ=255)
                              agTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTaa                                                               >  2:5058461/1‑96 (MQ=255)
                               gTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAAt                                                              >  2:12207114/1‑96 (MQ=255)
                                    gTAACGTGGCAGATCATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAAt                                                         >  1:10959396/1‑96 (MQ=255)
                                    gTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAAt                                                         <  2:3235408/96‑1 (MQ=255)
                                      aaCGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATgg                                                       >  2:4306846/1‑96 (MQ=255)
                                       aCGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGa                                                      <  1:5517908/96‑1 (MQ=255)
                                       aCGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGa                                                      >  1:884946/1‑96 (MQ=255)
                                       aCGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGa                                                      <  1:1190935/96‑1 (MQ=255)
                                        cGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGTCTCAAGTTATTAATg                                                             >  1:10113262/1‑88 (MQ=255)
                                        cGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATg                                                             <  2:10113262/88‑1 (MQ=255)
                                          tGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGAtgt                                                   >  1:966455/1‑94 (MQ=255)
                                           ggCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGAtgtt                                                  <  2:1592557/96‑4 (MQ=255)
                                             cAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTcc                                               <  1:6105355/96‑1 (MQ=255)
                                               gAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGt                                             >  2:3580142/1‑96 (MQ=255)
                                               gAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGt                                             <  2:7253762/96‑1 (MQ=255)
                                                aaCATTTTACTGTCTGTATATATAAGTTTTATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTc                                            >  2:13893601/1‑96 (MQ=255)
                                                aaCATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTc                                            >  1:9296744/1‑96 (MQ=255)
                                                 aCATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCGCAAGGTATTAATGAAATGGCTGTTCCGTcc                                           >  1:6207433/1‑96 (MQ=255)
                                                  cATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTccc                                          <  1:4779680/96‑1 (MQ=255)
                                                  cATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTccc                                          >  2:7599500/1‑96 (MQ=255)
                                                  cATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTccc                                          <  1:11164898/96‑1 (MQ=255)
                                                   aTTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCa                                         >  1:4351294/1‑96 (MQ=255)
                                                     tttACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCAtt                                       <  2:3379898/96‑1 (MQ=255)
                                                     tttACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCAtt                                       <  1:14059250/96‑1 (MQ=255)
                                                      ttACTTTCTGTATATATAAGTTTTATTAATGGATTTTTTAATTCAGGGAATTTTTATGGCTAAATTTATTAATGAAATGGATGTTCCGTCCCATTc                                      <  1:11510907/96‑1 (MQ=255)
                                                      ttACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTc                                      <  2:6706813/96‑1 (MQ=255)
                                                      ttACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTc                                      >  2:6479355/1‑96 (MQ=255)
                                                      ttACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTc                                      <  1:1503119/96‑1 (MQ=255)
                                                      ttACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTc                                      >  1:13366677/1‑96 (MQ=255)
                                                       tACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCg                                     <  2:12906636/96‑1 (MQ=255)
                                                       tACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCg                                     <  1:3606542/96‑1 (MQ=255)
                                                             ctgtATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCgtttgtt                               >  2:3763028/1‑96 (MQ=255)
                                                             ctgtATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCgtttgtt                               >  1:10045525/1‑96 (MQ=255)
                                                             ctgtATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCgtttgtt                               >  2:11609796/1‑96 (MQ=255)
                                                               gtATATATAAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGtttt                             <  1:5739869/96‑1 (MQ=255)
                                                                  tatataAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCa                          >  1:12412384/1‑96 (MQ=255)
                                                                    tataAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATg                        >  1:2251581/1‑96 (MQ=255)
                                                                     ataAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCAttg                       <  1:10807527/96‑3 (MQ=255)
                                                                     ataAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATgg                       >  2:10663766/1‑96 (MQ=255)
                                                                      taAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGt                      >  2:2750850/1‑96 (MQ=255)
                                                                      taAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGt                      <  2:13615225/96‑1 (MQ=255)
                                                                      taAGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGt                      >  2:11963841/1‑96 (MQ=255)
                                                                       aaGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTa                     <  2:74329/96‑1 (MQ=255)
                                                                        aGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTAc                    >  1:3095056/1‑96 (MQ=255)
                                                                        aGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTAc                    >  2:5847552/1‑96 (MQ=255)
                                                                        aGTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTAc                    <  2:9372865/96‑1 (MQ=255)
                                                                         gTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACa                   <  2:3945567/96‑1 (MQ=255)
                                                                         gTTATATCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACa                   >  2:9723058/1‑96 (MQ=255)
                                                                           tataTCAATGGATTTTTTAATTCATGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAgg                 >  1:14321408/1‑96 (MQ=255)
                                                                           tataTCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAgg                 <  2:13366677/96‑1 (MQ=255)
                                                                           tataTCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAgg                 <  1:13902464/96‑1 (MQ=255)
                                                                            atatCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGt                <  2:8003370/96‑1 (MQ=255)
                                                                            atatCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGt                >  1:7724833/1‑96 (MQ=255)
                                                                             tatCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTg               >  1:12565208/1‑96 (MQ=255)
                                                                             tatCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTACATGGTACAGGtc               <  1:11396291/96‑2 (MQ=255)
                                                                              atCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCGTGGTACAGGTga              >  1:7024264/1‑96 (MQ=255)
                                                                              atCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGgaga              >  2:6021750/1‑96 (MQ=255)
                                                                              atCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTga              >  1:290613/1‑96 (MQ=255)
                                                                               tCAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTgag             >  1:14241963/1‑96 (MQ=255)
                                                                                cAATGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTACATGGTACAGGTgaga            >  1:10325951/1‑96 (MQ=255)
                                                                                 aaTGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTgagag           <  2:5341243/96‑1 (MQ=255)
                                                                                  aTGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTgagaga          <  1:7071842/96‑1 (MQ=255)
                                                                                  aTGGATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTgagaga          >  1:7932065/1‑96 (MQ=255)
                                                                                    ggATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGata        >  1:849815/1‑96 (MQ=255)
                                                                                     gATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGatat       >  2:6301414/1‑96 (MQ=255)
                                                                                     gATTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGatat       <  1:6763881/96‑1 (MQ=255)
                                                                                      aTTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATAtt      >  2:8496849/1‑96 (MQ=255)
                                                                                      aTTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATAtt      <  1:5234491/96‑1 (MQ=255)
                                                                                      aTTTTTTAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATAtt      >  2:11291989/1‑96 (MQ=255)
                                                                                       ttttttAATTCAGGGAATTTTTATGGCTCCAGTTATTAATGAAATGGATTCTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATAttt     <  2:11773113/96‑1 (MQ=255)
                                                                                       ttttttAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATAttt     >  1:2638983/1‑96 (MQ=255)
                                                                                        tttttAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATAtttt    >  1:7586730/1‑96 (MQ=255)
                                                                                        tttttAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATAtttt    >  1:4033274/1‑96 (MQ=255)
                                                                                        tttttAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATAtttt    >  2:8805207/1‑96 (MQ=255)
                                                                                        tttttAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTAGTTTGTTTTTCATGGTACAGGTGAGAGATAtttt    >  2:9109675/1‑96 (MQ=255)
                                                                                         ttttAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTc   >  2:5552712/1‑96 (MQ=255)
                                                                                          tttAATTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCt  >  1:9145571/1‑96 (MQ=255)
                                                                                               |                                                                                            
TAAAGTTTTTGCCAGCCTATTACTGATAAGAGTATTGTAACGTGGCAGAACATTTTACTGTCTGTATATATAAGTTATATCAATGGATTTTTTAATTTCAGGGAATTTTTATGGCTCAAGTTATTAATGAAATGGATAGTTCCGTCCCATTCGTTTGTTTTTCATGGTACAGGTGAGAGATATTTTCT  >  NC_000913/4477184‑4477371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: