| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,957,560 | +C | intergenic (‑129/‑732) | ppiC ← / → rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,957,558 | 1 | . | C | 98.2% | 1292.1 / 10.5 | 341 | intergenic (‑127/‑734) | ppiC/rep | peptidyl‑prolyl cis‑trans isomerase C/rep helicase |
| Reads supporting (aligned to +/- strand): ref base . (4/2); new base C (113/220); total (119/222) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.79e-01 | |||||||||||
Only 100 of 400 total aligned reads displayed.
TTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑‑T‑G‑‑C‑‑TCG‑CAGGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCA > NC_000913/3957467‑3957648 | ttttAGCATCATCCGCAGCTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGCTACATATATGGCAAAAGCCCGGAAAAC‑CCG‑G‑G‑‑CT‑TCG‑CAGGT‑c‑c < 1:5209734/96‑1 (MQ=255) tttAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGT‑c‑cc < 2:5767995/96‑2 (MQ=255) ttAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGT‑c‑cct < 1:2771246/96‑3 (MQ=255) ttAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGT‑c‑cct < 2:1479726/96‑3 (MQ=255) tAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGT‑c‑cctc < 2:12565882/96‑4 (MQ=255) tAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGT‑c‑cctc < 1:13511849/96‑4 (MQ=255) tAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGACCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGT‑c‑cctc > 1:1007390/1‑93 (MQ=255) tAGCATGATACGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGT‑c‑cctc < 1:3322940/96‑4 (MQ=255) aGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGT‑c‑cctca < 2:7480966/96‑5 (MQ=255) cATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAg > 2:11884494/1‑96 (MQ=255) aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAgg > 1:878115/1‑96 (MQ=255) aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAgg < 1:9923321/96‑1 (MQ=255) aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑‑GGG‑‑CT‑TCG‑CAGGTCC‑CTCAAgg < 1:13772995/96‑1 (MQ=255) gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCCAgggg > 2:6803158/1‑96 (MQ=255) gATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAgggg > 2:13134253/1‑96 (MQ=255) tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAACCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGgag > 2:1662107/1‑96 (MQ=255) cctgCAAATGCCAAAGTATTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCGGGAAAAT‑CG‑‑G‑G‑‑CCTTCG‑CAGGTCC‑CTCAAGGGgag < 2:71720/93‑1 (MQ=255) cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGaa < 2:1350051/96‑1 (MQ=255) gCAGATGCTAACGAAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCC‑‑G‑G‑‑CT‑TCG‑CAGGTCC‑CCCCAGGGGAGaaa > 2:8411741/1‑96 (MQ=255) cAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGaaaa > 1:5792122/1‑96 (MQ=255) taTGCTAACGTAAATGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CCGGTCC‑CTCAAGGGGGGAAAACt > 1:13887132/2‑96 (MQ=255) gATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTGCATATATGGGAAAAGCACGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑GAGGTCC‑CTCAAGGGGAGAGAACt > 1:12792867/1‑96 (MQ=255) gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAACCTTAg < 2:4490904/96‑1 (MQ=255) caaaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATTGCAAAAGCCCGGAAAAT‑CC‑‑G‑GGAT‑‑TCG‑CACGTCC‑CTCAAAGGGAGGAAACTTAgg > 1:10686371/3‑96 (MQ=255) cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAgg < 1:2943716/96‑1 (MQ=255) cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAgg < 1:11215253/96‑1 (MQ=255) cTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAgg > 1:12488161/1‑96 (MQ=255) tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAggg < 2:6306875/96‑1 (MQ=255) tAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAggg > 1:1696910/1‑96 (MQ=255) aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑‑GGG‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGc < 2:14222723/96‑1 (MQ=255) aaCGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TGG‑CAGGT‑CGCTCAAGGGGAGAAAACTTAGGGc > 2:12683746/1‑96 (MQ=255) aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGcc < 2:612027/96‑1 (MQ=255) aCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGcc < 2:6007669/96‑1 (MQ=255) cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGGGAAAACTTAGGGCct > 2:3743415/1‑96 (MQ=255) cGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAA‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCct > 2:10864122/1‑96 (MQ=255) gTAATTGTCAGTCAGGGAGTGGTTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCctc < 1:6927564/96‑1 (MQ=255) gTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCGCCAGTC‑C‑CTCAAGGGGAGAAAACTTAGGGCctc > 2:11638471/1‑96 (MQ=255) tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCCAGGGGGGGAAACTTAGGGCctct > 2:2673199/1‑96 (MQ=255) tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCctct < 1:9277629/96‑1 (MQ=255) aaTTGTCAGTCAGGGAGTGGCTGGTACCTATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTa > 2:4112526/1‑96 (MQ=255) aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTa < 2:10765216/96‑1 (MQ=255) tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATgg < 2:5322136/96‑1 (MQ=255) tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATgg < 1:6226725/96‑1 (MQ=255) tcagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGc > 2:9291577/1‑96 (MQ=255) agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCGGG‑G‑‑T‑‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa > 2:11699866/1‑96 (MQ=255) agtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTa < 2:7028081/96‑1 (MQ=255) tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa < 1:2237497/96‑1 (MQ=255) agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa < 2:1098528/96‑1 (MQ=255) agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑‑GGG‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa > 2:12429792/1‑96 (MQ=255) ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGt > 1:11918786/1‑96 (MQ=255) gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑‑GGG‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAggc < 1:7524271/96‑3 (MQ=255) aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACCAAGTCa > 1:7149968/1‑96 (MQ=255) aGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCa < 1:14362567/96‑1 (MQ=255) tGGCTGGTACATATATGGCAAAAGCTCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAGCTTAGGGCCTCTATGGGCTACAAAGTCAtt > 2:14130799/1‑96 (MQ=255) tGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt > 2:2907870/1‑96 (MQ=255) tGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 1:5373802/96‑1 (MQ=255) tGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑‑GGG‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 2:6515775/96‑1 (MQ=255) tGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑‑GGG‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAtt < 2:2070267/96‑1 (MQ=255) gcgtgTACATACAGGTAAAAACCCCGGAAAAC‑CCG‑G‑G‑‑CT‑TCG‑CAGGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 1:9514213/92‑1 (MQ=255) gCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAGGCCATTAt > 2:9037086/1‑96 (MQ=255) cTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 1:8644363/96‑1 (MQ=255) cTGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc < 1:4450395/96‑1 (MQ=255) tGGTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg > 2:3449782/1‑96 (MQ=255) gTANATATATGGCAAAAGCCCGGAAAATACG‑‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg > 2:6934347/1‑96 (MQ=255) gTACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg < 1:7700911/96‑1 (MQ=255) tACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg > 2:12253024/1‑96 (MQ=255) tACATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg < 2:5436625/96‑1 (MQ=255) tACATATATGGCAAAAGCCCGGAAAAG‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg < 2:11365518/96‑1 (MQ=255) aCATATATGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa < 1:9003766/96‑1 (MQ=255) atatatGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg < 2:7762912/96‑1 (MQ=255) tatatGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg < 2:12928709/96‑1 (MQ=255) tatatGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATgg > 1:13559276/1‑96 (MQ=255) ctatGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt < 1:350963/95‑1 (MQ=255) atatGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 2:9641887/1‑96 (MQ=255) atatGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt > 2:5913708/1‑96 (MQ=255) tatGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt > 2:2194060/1‑96 (MQ=255) tatGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt < 1:13134253/96‑1 (MQ=255) atGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta < 2:8213420/96‑1 (MQ=255) atGGCAAAAGCCCGGAAAAT‑CC‑‑GGG‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta > 2:11265868/1‑96 (MQ=255) tGGCAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttat < 1:4875498/96‑1 (MQ=255) cAAAAGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGCGGATGGttatttt < 1:10990025/96‑1 (MQ=255) aaaaGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttca < 1:11482654/96‑3 (MQ=255) aaGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGTGAAAACTTAGGGCCTCTATGGGGTACAAAGTCATTATCGGGGATGGttattttatt < 1:3766923/96‑1 (MQ=255) aaGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 1:5991274/96‑1 (MQ=255) aaGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt < 2:6632596/96‑1 (MQ=255) aGCCCGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 2:1947734/1‑96 (MQ=255) aGCCAGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg > 1:1182449/1‑96 (MQ=255) gCCCGGAAACT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGt < 1:12164392/96‑1 (MQ=255) ccGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCa < 1:3383610/96‑1 (MQ=255) cGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCaa < 2:878115/96‑1 (MQ=255) cGGAAAAT‑CCG‑G‑G‑‑CT‑TCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAGGGTTATTTTATTGtaat > 1:1824672/1‑93 (MQ=255) gcttCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGat < 1:8210193/93‑1 (MQ=255) ttCG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGatat < 2:807744/95‑1 (MQ=255) cG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATgg > 2:10384168/1‑96 (MQ=255) cG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCCATATgg < 2:13712211/96‑1 (MQ=255) cG‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAGGGTTATTTTATTGTCAATTTATGAGCGATATgg > 1:4109810/1‑96 (MQ=255) g‑CAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGc < 1:8471209/96‑1 (MQ=255) cAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTCTGGGCTACAAAGTCATTATCGGGGATGGTTATTATATTGTCAATTTATGAGCGATATGGCa < 2:4279725/96‑1 (MQ=255) cAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCa > 2:11525784/1‑96 (MQ=255) cAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGGTATTTTATTGTCAATTTATGAGCGATATGGCa > 2:4707620/1‑96 (MQ=255) | TTTTAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAAT‑CC‑‑T‑G‑‑C‑‑TCG‑CAGGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATGGCA > NC_000913/3957467‑3957648 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |