Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,013,177 +C coding (543/999 nt) ysgA ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,013,1771.C99.8% 2028.8 / ‑6.6 517A181A (GCC→GCGysgAhypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (1/0);  major base C (293/222);  minor base A (1/0);  total (295/222)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01

Only 100 of 534 total aligned reads displayed.

GCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCCGGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACTGC  >  NC_000913/4013089‑4013263
                                                                                         |                                                                                      
 cATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTaa                                                                                 >  1:7111990/1‑96 (MQ=255)
 cATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTaa                                                                                 <  1:736722/96‑1 (MQ=255)
 cATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTaa                                                                                 >  1:5684349/1‑96 (MQ=255)
  aTTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAg                                                                                <  1:10928675/96‑1 (MQ=255)
     agctgcCCGCAGCGCCTGGAGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATc                                                                             <  1:3257926/96‑1 (MQ=255)
     agcagcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGTAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATc                                                                             >  1:9427701/1‑96 (MQ=255)
     agcagcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATc                                                                             <  2:272893/96‑1 (MQ=255)
     agcagcCCGCAGCGCCTGGCGAATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATc                                                                             <  1:5928025/96‑1 (MQ=255)
      gcagcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCTGCGAGTTAAGATCg                                                                            >  2:6887109/1‑96 (MQ=255)
       cagcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCgg                                                                           <  1:13993345/96‑1 (MQ=255)
       cagcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCgg                                                                           >  1:1775147/1‑96 (MQ=255)
        ggcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGACGAGAATCGGCGCGTTAAGATCGGt                                                                          >  1:13529083/2‑96 (MQ=255)
        agcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGt                                                                          >  2:8980824/1‑96 (MQ=255)
        agcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGt                                                                          >  2:5716678/1‑96 (MQ=255)
        agcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGt                                                                          >  1:3764750/1‑96 (MQ=255)
         gcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGGGAATCGGCGCGTTAAGATCGGtt                                                                         <  1:11073032/96‑1 (MQ=255)
         gcCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGtt                                                                         <  1:3468481/96‑1 (MQ=255)
           ccGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCCCCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGc                                                                       <  1:995985/96‑1 (MQ=255)
           ccGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTGAAGATCGGTTgg                                                                       >  1:5308037/1‑95 (MQ=255)
             gCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGa                                                                     <  2:7196638/96‑1 (MQ=255)
              cAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGat                                                                    >  1:13408609/1‑96 (MQ=255)
              cAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGat                                                                    <  1:10009610/96‑1 (MQ=255)
               aGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGata                                                                   >  1:8489798/1‑96 (MQ=255)
               aGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGata                                                                   <  1:12920610/96‑1 (MQ=255)
               aGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGata                                                                   >  2:10180814/1‑96 (MQ=255)
                gcgcCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCAGTTGCGatat                                                                  >  2:13175480/1‑96 (MQ=255)
                 cgcCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATc                                                                 >  2:8744133/1‑96 (MQ=255)
                  gcCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCa                                                                >  1:495464/1‑96 (MQ=255)
                  gcCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCa                                                                >  1:8917206/1‑96 (MQ=255)
                   ccTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCaa                                                               >  2:9509067/1‑96 (MQ=255)
                   ccTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTATTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCaa                                                               <  2:13743200/96‑1 (MQ=255)
                    cTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAAc                                                              <  1:7974829/96‑1 (MQ=255)
                    cTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAAc                                                              >  1:4830796/1‑96 (MQ=255)
                     tGGCGCATGGTTTCAACGCCCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACa                                                             <  1:161172/96‑1 (MQ=255)
                        cgcATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATGCTGACCACCATATAAGACGAGAATCGGCGCGTTAAGATCGGTTGCGATATAAACAGgt                                                          >  1:12387057/1‑96 (MQ=255)
                         gcATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAGCAGgtt                                                         >  1:8720991/1‑96 (MQ=255)
                         gcATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgtt                                                         <  2:6700866/96‑1 (MQ=255)
                          cATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgttg                                                        >  1:6224100/1‑96 (MQ=255)
                          aaTGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgttg                                                        >  2:9284999/2‑96 (MQ=255)
                           aTGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgttgt                                                       <  2:762531/96‑1 (MQ=255)
                            tGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGCCCCCCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGgttgtt                                                      <  1:12033292/96‑1 (MQ=255)
                             ggTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGttt                                                     >  2:11795250/1‑96 (MQ=255)
                             ggTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGttt                                                     >  2:3939345/1‑96 (MQ=255)
                             ggTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGttt                                                     >  2:10478897/1‑96 (MQ=255)
                              gtctCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTc                                                    <  1:8303846/93‑1 (MQ=255)
                              gTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTc                                                    <  1:8121235/96‑1 (MQ=255)
                               tttCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGtttgg                                                   <  1:10685636/96‑3 (MQ=255)
                               tttCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCg                                                   <  2:11515275/96‑1 (MQ=255)
                                ttCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCgg                                                  >  1:13774923/1‑96 (MQ=255)
                                 tCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGt                                                 >  2:133138/1‑96 (MQ=255)
                                 tCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGt                                                 >  1:9022795/1‑96 (MQ=255)
                                 tCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGt                                                 >  2:6072821/1‑96 (MQ=255)
                                  cAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTg                                                <  1:2178048/96‑1 (MQ=255)
                                      gCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAAtt                                            <  2:5227704/96‑1 (MQ=255)
                                      gCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAAtt                                            >  1:10456838/1‑96 (MQ=255)
                                      gCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAAtt                                            >  2:7815435/1‑96 (MQ=255)
                                      gCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGCTGTTTCGGTGAAtt                                            >  2:4676462/1‑96 (MQ=255)
                                       ctctCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTc                                           <  2:14221015/96‑1 (MQ=255)
                                        tctcCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCa                                          >  2:637116/1‑96 (MQ=255)
                                        tctcCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCa                                          >  2:12808922/1‑96 (MQ=255)
                                         ctacTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAg                                         >  1:3654846/4‑96 (MQ=255)
                                          tcCTGCGGAATGCTGTTATCCTGACCACCATATAAGACGAGAATCGGCGCGTTAAGATCAGTTGCGATATCAACAGGATGTTTCGGTGAATTCAGc                                        >  2:8032438/1‑96 (MQ=255)
                                           ccTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCg                                       >  2:1067979/1‑96 (MQ=255)
                                           ccTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCg                                       >  1:4489672/1‑96 (MQ=255)
                                             tGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGAc                                     <  2:4335439/96‑1 (MQ=255)
                                             tGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGAc                                     <  1:5994679/96‑1 (MQ=255)
                                               cGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACtt                                   >  2:12447404/1‑96 (MQ=255)
                                               aggAATGCTGTTAACCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACtt                                   >  1:11378684/2‑96 (MQ=255)
                                                ggAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTg                                  >  2:4888848/1‑96 (MQ=255)
                                                ggAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTg                                  >  1:2039074/1‑96 (MQ=255)
                                                    tGCTGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGc                              >  2:32870/1‑96 (MQ=255)
                                                     tcTGTTATCCTGACCACCATATAAGCCGACAACCGGCGCGTTAATATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGcc                             <  1:2764223/95‑1 (MQ=255)
                                                       tGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCg                           >  2:11113699/1‑96 (MQ=255)
                                                       tGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCg                           >  1:5471019/1‑96 (MQ=255)
                                                       tGTTATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCg                           >  2:13626055/1‑96 (MQ=255)
                                                         ttATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCTGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTc                         <  1:2391221/96‑1 (MQ=255)
                                                         ttATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTc                         >  2:12134105/1‑96 (MQ=255)
                                                          tATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCa                        >  1:5513097/1‑96 (MQ=255)
                                                          tATCCTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCa                        <  2:1453886/96‑1 (MQ=255)
                                                              cTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGttt                    >  2:3672032/1‑96 (MQ=255)
                                                              cTGACCACCATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGttt                    >  1:14294991/1‑96 (MQ=255)
                                                                 accaccATATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAACTCAGCGACTTGTCGCCCGTCAGTTTGcc                 <  2:13915156/96‑1 (MQ=255)
                                                                  ccaccaTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCg                >  1:4057007/1‑96 (MQ=255)
                                                                  ccaccaTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATACCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCg                >  2:1989794/1‑96 (MQ=255)
                                                                   caccaTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTGCGTTTGCCGt               >  1:7687713/1‑96 (MQ=255)
                                                                    accaTATAAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTa              >  2:10873552/1‑96 (MQ=255)
                                                                        tataAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCAc          <  2:2344982/96‑1 (MQ=255)
                                                                        tataAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACAAc          >  1:13161156/1‑96 (MQ=255)
                                                                         ataAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACg         >  2:7463643/1‑96 (MQ=255)
                                                                         ataAGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAAGTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACg         >  1:12719409/1‑96 (MQ=255)
                                                                           aaGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGcc       >  2:5819575/1‑96 (MQ=255)
                                                                           aaGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGcc       <  2:6269575/96‑1 (MQ=255)
                                                                           aaGCCGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGcc       <  2:3003934/96‑1 (MQ=255)
                                                                              ccGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCagt    <  1:11808234/96‑3 (MQ=255)
                                                                              ccGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACt    >  2:8420109/1‑96 (MQ=255)
                                                                               cGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCCGCGACTTGTCGACCGTCAGTCTGCCGTACCACGCCACTg   <  1:10170660/96‑1 (MQ=255)
                                                                               cGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACTg   <  2:6574150/96‑1 (MQ=255)
                                                                               cGAGAATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACTg   >  1:6687047/1‑96 (MQ=255)
                                                                                gagaATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACTGc  >  2:12595263/1‑96 (MQ=255)
                                                                                gagaATCGGCGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACTGc  >  2:9695696/1‑96 (MQ=255)
                                                                                         |                                                                                      
GCATTAGCAGCCCGCAGCGCCTGGCGCATGGTTTCAACGCTCTCCTGCGGAATGCTGTTATCCTGACCACCATATAAGCCGAGAATCCGGCGTTAAGATCGGTTGCGATATCAACAGGTTGTTTCGGTGAATTCAGCGACTTGTCGCCCGTCAGTTTGCCGTACCACGCCACTGC  >  NC_000913/4013089‑4013263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: