New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4008398192 (0.340)122 (0.220)
+AAGA		 33/178 27.2 39.6% coding (481/516 nt) b4555 hypothetical protein
?NC_000913 4008399 = 192 (0.330)coding (482/516 nt) b4555 hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 125 total aligned reads displayed.

GGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑C‑AA‑AGGCCATGCGCTGGA‑AG‑GCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4008306‑4008398
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTGA  >  NC_000913/4008399‑4008422
                                                                                                   ||||                          
GGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGGAGTGATGGCGGGCGGGGGTTT‑A‑AA‑AGGCCATGCGCTGGA‑AGCGGTGGCGA                               >  1:9934253/1‑96
 GGGCGATCGCCTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAA                              <  2:3209715/96‑1
  GGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAG                             <  1:12447895/96‑1
  GGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAG                             <  1:12495299/96‑1
   GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGA                            <  2:5229068/96‑1
   GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGA                            <  1:602196/96‑1
   GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGA                            <  2:599041/96‑1
   GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGA                            >  2:13060395/1‑96
   GCGAGCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGA                            <  2:12549186/96‑1
    CGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAA                           >  1:3301232/1‑96
    CGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAA                           <  2:1345660/96‑1
     GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATTCGCTGGG‑AGCGGGGGCGAAGAAA                          >  1:4771480/1‑96
     GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAA                          <  2:403814/96‑1
     GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAA                          <  2:10998203/96‑1
     GATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAA                          >  2:13237122/1‑96
      tgCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAAC                         >  1:11767142/3‑96
      ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGGAGAAAC                         >  1:7086718/1‑96
      ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAAa                         >  1:8576569/1‑95
      ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAAC                         <  2:1536981/96‑1
      ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAAC                         >  2:4652711/1‑96
      ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AAGCCCTGCGCTGGA‑AGCGGTGGCGAAGAAAC                         >  2:11637756/1‑96
      ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑C‑AACAGGCCAGGCGCTGGACAG‑GGGGGCGAACAAAC                         >  1:13328085/1‑96
      ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGGTT‑CAAA‑AGGCCAAGCGCTGGA‑AGCGGTGGCGAAGAAAC                         >  1:2383018/1‑96
      ATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGGTT‑CAAA‑AAGCCATGCGCTGGA‑AGCGGGGGCGAAGAAAC                         >  2:2503547/1‑96
       TCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT                        <  2:4089802/96‑1
       TCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT                        <  1:4635351/96‑1
       TCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT                        <  2:7442480/96‑1
       TCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT                        <  2:9482144/96‑1
       TCGCGTCAACGTCAGTGTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT                        <  1:849098/96‑1
        CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT‑G                      <  1:11713928/96‑1
        CGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCCCTGGA‑AGCGCGGGCGAAGAAACat                       >  1:2675693/1‑94
        CGCGTCAACGTCAGTTACTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT‑G                      <  1:12795215/96‑1
         GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGGGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT‑GG                     >  2:2420204/1‑96
         GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT‑GG                     >  1:8897623/1‑96
         GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT‑GG                     <  2:4904628/96‑1
         GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGGGGCGGAGAAACT‑GG                     >  2:3016400/1‑96
         GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGGGGCGAAGAAACT‑GG                     >  2:13232428/1‑96
         GCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑C‑AACAGGCCATGCGCTGGG‑AGCGGTGGCGCAGAAACT‑GG                     <  1:1837540/96‑1
          CGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGG‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGGGAAGAAACG‑GGg                    >  2:5831162/1‑95
          CGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT‑GGg                    <  2:9839333/96‑2
          CGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT‑GGg                    <  2:6594041/96‑2
           GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT‑GGgc                   <  1:11576720/96‑3
           GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT‑GGgc                   <  2:10594396/96‑3
           GTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAAAT‑GGgc                   >  1:2448524/1‑94
            gCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGGGAAGAAACT‑GGgct                  >  1:11320077/2‑93
            TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GTCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT‑GGgct                  <  1:4070828/96‑4
            TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGGGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT‑GGggt                  >  2:4920021/1‑93
            TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGG‑AGCGGTGGCGAAGAAACT‑GGgct                  >  2:4358409/1‑93
            TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT‑GGgct                  <  2:3301232/96‑4
            TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT‑GGgct                  <  2:1890806/96‑4
            TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT‑GGgct                  <  2:3965113/96‑4
            TCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT‑GGgct                  <  1:1575640/96‑4
             CAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGG‑AGCGGTGGCGAAGAAACT‑GGgcta                 >  2:3806626/1‑92
             CAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACT‑GGgcta                 <  2:64940/96‑5
               ACGTCAGTTTCTCTCCCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACA                <  1:2502210/96‑1
               ACGTCAGTTTCTCTACCTTCACCGGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACA                <  1:4164753/96‑1
               ACGTCAGTTTCTCTACCTTAGCCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACA                <  1:13512263/96‑1
               ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACA                <  2:3384579/96‑1
               ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACA                <  1:5073461/96‑1
               ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACA                <  1:2998271/96‑1
               ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACA                <  2:3066577/96‑1
               ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACA                <  1:2116493/96‑1
               ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACA                <  2:8258003/96‑1
               ACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGGGGCGAAGAAACTGGGCTACA                >  2:5250572/1‑96
                CGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG               <  2:4911966/96‑1
                CGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG               <  2:8769091/96‑1
                CGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG               <  2:5408452/96‑1
                CGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG               <  1:9052895/96‑1
                CGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGGGGCGAAGCAACTGGGCTACAG               >  1:2888984/1‑96
                CGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGGTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG               >  2:98721/1‑96
                CGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGAGGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGAGGTGGCGAAGAAACTGGGCTACAG               <  1:14326870/96‑1
                 nTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGGTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG‑C             >  1:1977746/2‑96
                 GTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG‑C             >  1:5094954/1‑96
                 GTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGCTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG‑C             <  1:2878905/96‑1
                  TCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG‑Cc            <  1:9220995/96‑2
                  TCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG‑Cc            <  2:3994244/96‑2
                  TCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG‑Cc            >  1:13116170/1‑95
                  TCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGGTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTTGCGAAGAAACTGGGCTACAG‑Cc            >  2:1425879/1‑95
                   CAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTTCC‑AA‑AGGCCATGCGCTGGA‑AGCGGGGGCGAAGAAACTGGGCTACAG‑Cct           >  1:4272228/1‑94
                   CAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG‑Cct           >  1:6956805/1‑94
                    AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG‑Cctg          <  1:5497220/96‑4
                    AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG‑Cctg          <  1:10766649/96‑4
                    AGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG‑Cctg          <  2:7678767/96‑4
                     GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG‑Cctga         >  1:8002615/1‑92
                     GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG‑Cctga         >  1:6589661/1‑92
                     GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG‑Cctga         <  1:6129306/96‑5
                     GTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAG‑Cctga         >  1:601611/1‑92
                       TTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAG        <  2:9864461/96‑1
                       TTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAG        <  1:4189153/96‑1
                       TTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAG        <  1:13952254/96‑1
                        TCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGG       <  2:11116962/96‑1
                        TCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGG       >  1:8148722/1‑96
                          TCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGAT     <  2:4165154/96‑1
                           CTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATT    <  1:10027819/96‑1
                            TACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTG   <  2:3915809/96‑1
                            TACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTG   <  1:2078891/96‑1
                            TACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTG   >  1:6996610/1‑96
                             ACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGt  <  1:13737290/96‑2
                             ACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGt  <  2:5605895/96‑2
                             ACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAA‑AGGCCATGCGCTGGA‑AGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGt  >  2:2831854/1‑95
                                                                                                   ||||                          
GGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑C‑AA‑AGGCCATGCGCTGGA‑AG‑GCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4008306‑4008398
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTGA  >  NC_000913/4008399‑4008422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.