Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,949,3440GA49.1% ‑0.8 / inf 971Q174Q (CAG→CAAyecDhypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (232/261);  new base A (230/246);  total (463/508)
Fisher's exact test for biased strand distribution p-value = 7.00e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.48e-01
Rejected as consensus: E-value score below prediction cutoff.
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 1071 total aligned reads displayed.

AATATCGGTGTTGAATCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCG  >  NC_000913/1949249‑1949439
                                                                                               |                                                                                               
aaTATCGGTGTTGAATCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGcgcag                                                                                                 >  1:4514814/1‑96 (MQ=255)
  tatCGGTGTTGAATCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCGGCCAGCGCCGAgcaaca                                                                                               >  1:6630826/1‑96 (MQ=255)
    tCGGTGTTGAATCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAAcaca                                                                                             <  2:7880106/96‑1 (MQ=255)
    tCGGTGTTGAATCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAACACGCCTGTAGTGCCGCCAGCGCCGAGCAAcaca                                                                                             <  2:14053691/96‑1 (MQ=255)
     cGGTGTTGAATCCACCGCCCGCACTGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACaa                                                                                            <  1:10305258/96‑1 (MQ=255)
     cGGTGTTGAATCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACaa                                                                                            <  1:8093423/96‑1 (MQ=255)
     cGGTGTTGAATCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACaa                                                                                            <  2:9081068/96‑1 (MQ=255)
      ggTGTTGAATTCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAATACGCCTGTAGTGCCGCCAGCGCCGATCAGCACAAt                                                                                           >  1:996983/1‑96 (MQ=255)
      ggTGTTGAATCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAAt                                                                                           <  2:6271439/96‑1 (MQ=255)
      ggTGTTGAATCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAAt                                                                                           <  2:6984096/96‑1 (MQ=255)
       gtgtTGAATCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATa                                                                                          >  2:8043928/1‑96 (MQ=255)
       gcgtTGAATCCACCGCCCGCAAGGCCTGGGGACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGCAGTGCCGCCAGCGCCGAGCAGCACAATa                                                                                          <  2:4241887/94‑1 (MQ=255)
         gtTGAATCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAAc                                                                                        >  1:3732769/1‑96 (MQ=255)
           tGAATCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAg                                                                                      >  1:3913619/1‑96 (MQ=255)
            gAATCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGt                                                                                     >  2:5978441/1‑96 (MQ=255)
            gAATCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAgc                                                                                     <  1:9217248/96‑2 (MQ=255)
             aaTCCACCGCCCGCAATGCCTGGGAACTTTGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGGGCAACACAATAAcggca                                                                                    >  1:4093046/1‑92 (MQ=255)
              aTCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGCCGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTAt                                                                                   <  2:1896460/96‑1 (MQ=255)
               tCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATc                                                                                  <  2:4805476/96‑1 (MQ=255)
               tCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATc                                                                                  <  2:5823224/96‑1 (MQ=255)
                ccACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCa                                                                                 <  2:2929593/96‑1 (MQ=255)
                  aCCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTaat                                                                               >  1:120457/1‑95 (MQ=255)
                   ccgcccgcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAAcc                                                                              <  1:11561250/96‑1 (MQ=255)
                     gcccgcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCat                                                                            <  1:5219388/96‑1 (MQ=255)
                     gcccgcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCat                                                                            <  2:10155103/96‑1 (MQ=255)
                      cccgcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCata                                                                           <  2:2263489/96‑1 (MQ=255)
                      cccgcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCata                                                                           <  1:7242515/96‑1 (MQ=255)
                      cccgcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCata                                                                           <  2:13416038/96‑1 (MQ=255)
                         gcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCt                                                                        >  1:470450/1‑96 (MQ=255)
                         gcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCt                                                                        >  2:2693687/1‑96 (MQ=255)
                          cAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCGTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTa                                                                       >  2:10409140/1‑96 (MQ=255)
                          cAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGTCAGCGCCGAGCAGCACAATACCAGTATCAACCATCTCTa                                                                       <  1:12633857/96‑1 (MQ=255)
                          cAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTa                                                                       >  1:14129588/1‑96 (MQ=255)
                          cAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTa                                                                       <  2:7599508/96‑1 (MQ=255)
                             tGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTAccc                                                                    >  2:3441755/1‑96 (MQ=255)
                             tGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTCATCATATCTAccc                                                                    <  1:10989484/96‑1 (MQ=255)
                             tGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTAccc                                                                    >  1:5916566/1‑96 (MQ=255)
                              ggcTGGGCACTTGGCTTTAATCCGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATACCAGTATCAACCATATCTACCcg                                                                   <  1:3245918/94‑1 (MQ=255)
                              gCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACAGAATAACAGCATTAATCATATCTACCcg                                                                   <  2:12709366/96‑1 (MQ=255)
                               ccTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCcgc                                                                  >  1:5412404/1‑96 (MQ=255)
                                cTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCcgcg                                                                 >  1:199754/1‑96 (MQ=255)
                                cTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCcgcg                                                                 >  1:13993822/1‑96 (MQ=255)
                                 tGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCgcgc                                                                <  1:13236479/96‑1 (MQ=255)
                                   ggAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCAt                                                              >  2:8448868/1‑96 (MQ=255)
                                    gAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATc                                                             <  1:7706865/96‑1 (MQ=255)
                                    gAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATc                                                             <  2:10949560/96‑1 (MQ=255)
                                       cTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGcc                                                          >  2:3174060/1‑96 (MQ=255)
                                        ttGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGccc                                                         >  2:13939967/1‑96 (MQ=255)
                                          ggCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCgt                                                       <  1:7461326/96‑1 (MQ=255)
                                            cTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCgtgt                                                     <  1:4980795/96‑1 (MQ=255)
                                             tttAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGtgtg                                                    >  2:8769096/1‑96 (MQ=255)
                                             tttAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGtgtg                                                    <  2:1615465/96‑1 (MQ=255)
                                                 aTCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTa                                                <  1:2926219/96‑1 (MQ=255)
                                                  tCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTCCCCGCGCATCGCCCGTGTGCGTAg                                               <  2:3904056/96‑1 (MQ=255)
                                                   cTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGc                                              <  1:14411439/96‑1 (MQ=255)
                                                    tGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCg                                             >  1:2741289/1‑96 (MQ=255)
                                                    tGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCg                                             >  2:9398942/1‑96 (MQ=255)
                                                    tGGTGATCGCCGAAGACGCCTGTAGCGCAGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTTCCCGCGCATCGCCCGTGTGCGTAGCg                                             <  2:4619197/96‑1 (MQ=255)
                                                      gTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGCAGCggg                                           >  1:7938982/1‑94 (MQ=255)
                                                      gTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTg                                           >  2:14298827/1‑96 (MQ=255)
                                                         aTTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGaa                                        >  2:13774067/1‑96 (MQ=255)
                                                         aTTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGaa                                        <  2:9706965/96‑1 (MQ=255)
                                                          ttGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAag                                       <  2:10689103/96‑1 (MQ=255)
                                                            gCCGAAGACGCCTGTACTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAagag                                     <  1:12803916/96‑1 (MQ=255)
                                                               gAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAATAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATc                                  >  1:2569217/1‑96 (MQ=255)
                                                               gAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAgaga                                    <  2:6578427/94‑1 (MQ=255)
                                                                  gACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATccct                               <  1:8238962/96‑3 (MQ=255)
                                                                  gACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCtt                               <  2:12999227/96‑2 (MQ=255)
                                                                     gCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAAc                            >  2:4122389/1‑96 (MQ=255)
                                                                     gCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCttcac                            >  2:11726001/1‑92 (MQ=255)
                                                                      ccTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAAcg                           <  2:3709267/96‑1 (MQ=255)
                                                                       atGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAAcgc                          <  1:226381/95‑1 (MQ=255)
                                                                        tGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCAcgcg                         >  1:13694753/1‑96 (MQ=255)
                                                                            gTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTAt                     <  2:11330489/96‑1 (MQ=255)
                                                                              gccgccAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGa                   <  1:9669328/96‑1 (MQ=255)
                                                                               gcgccAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTAACGCGCTATGAt                  >  1:11765130/2‑96 (MQ=255)
                                                                               ccgccAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGAt                  <  1:11314241/96‑1 (MQ=255)
                                                                                 gccAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGAttt                <  1:8510356/96‑1 (MQ=255)
                                                                                  ccAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTa               <  1:6481322/96‑1 (MQ=255)
                                                                                   cAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTAc              >  1:6210067/1‑96 (MQ=255)
                                                                                    aacgcCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACa             >  1:10538178/3‑96 (MQ=255)
                                                                                    aGCGCCGAGCAACACAATAACAGCATTACTCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACa             <  1:12244061/96‑1 (MQ=255)
                                                                                     gcgcCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTAcct            <  1:10727120/96‑3 (MQ=255)
                                                                                      cgcCGAGCAGCACAATAACAGTATCACCCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATc           <  1:3469831/96‑1 (MQ=255)
                                                                                      cgcCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATc           >  1:9473758/1‑96 (MQ=255)
                                                                                      cgcCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATc           <  2:12442092/96‑1 (MQ=255)
                                                                                      cgcCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATc           <  1:8707361/96‑1 (MQ=255)
                                                                                      cgcCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATc           <  2:2027455/96‑1 (MQ=255)
                                                                                       gtcGAGCAGCACAAGAACAGTATCAACCATATCTACCCGCGCATCTCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCg          >  1:3070494/3‑96 (MQ=255)
                                                                                       gcCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCg          <  2:5668807/96‑1 (MQ=255)
                                                                                       gcCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGGAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCg          >  1:10010070/1‑96 (MQ=255)
                                                                                        ccGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCgg         <  1:1714307/96‑1 (MQ=255)
                                                                                         cGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGt        >  2:1193908/1‑96 (MQ=255)
                                                                                         cGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGt        >  1:6961099/1‑96 (MQ=255)
                                                                                         cGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGt        >  2:2484216/1‑96 (MQ=255)
                                                                                         cGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGt        >  1:5684518/1‑96 (MQ=255)
                                                                                          gAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTTCACGCGTTATGATTTACATCGGTc       >  2:5286155/1‑96 (MQ=255)
                                                                                           agcagcACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCt      <  2:11123775/96‑1 (MQ=255)
                                                                                              agcaCAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTAcc   <  2:506640/96‑1 (MQ=255)
                                                                                               gcaCAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTAccc  <  1:8917972/96‑2 (MQ=255)
                                                                                               |                                                                                               
AATATCGGTGTTGAATCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCCTCAACGCGTTATGATTTACATCGGTCTACCG  >  NC_000913/1949249‑1949439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: