Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,944,244 C→A intergenic (+13/‑80) rrlC → / → rrfC 23S ribosomal RNA/5S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,944,2440CA100.0% 413.3 / NA 172intergenic (+13/‑80)rrlC/rrfC23S ribosomal RNA/5S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (75/97);  total (75/97)

Only 100 of 179 total aligned reads displayed.

TGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCG  >  NC_000913/3944218‑3944336
                          |                                                                                            
tGAGGCTTATCCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgatg                         <  1:10485303/96‑1 (MQ=9)
tGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgatg                         <  1:10745796/96‑1 (MQ=14)
tGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgatg                         >  1:1780328/1‑96 (MQ=14)
tGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgatg                         <  2:11995548/96‑1 (MQ=14)
tGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgatg                         >  2:5857397/1‑96 (MQ=14)
tGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGACTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgatg                         <  1:14248503/96‑1 (MQ=9)
tGAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTCTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgatg                         <  1:13034549/96‑1 (MQ=9)
 gAGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCtgatga                        >  2:7390456/1‑96 (MQ=17)
  aGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGaa                       <  1:1873788/96‑1 (MQ=18)
  aGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGaa                       <  1:4701918/96‑1 (MQ=18)
  aGGCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGaa                       >  2:3672875/1‑96 (MQ=18)
   ggCTTAACCTTACAACGCAGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGaaa                      <  2:14363931/96‑1 (MQ=16)
    gCTTAACCTTCCAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAAc                     <  2:13189741/96‑1 (MQ=16)
    gCTTAACCTTATAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAAc                     <  2:12830109/96‑1 (MQ=16)
    gCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAAc                     >  1:9366406/1‑96 (MQ=18)
    gCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAAc                     <  1:8497721/96‑1 (MQ=18)
    gCTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAAc                     >  2:13793694/1‑96 (MQ=18)
     cTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACa                    <  1:4286972/96‑1 (MQ=18)
     cTTAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACa                    <  1:750821/96‑1 (MQ=18)
      ttAACCTTACAACGCCGAAGATGTTTTGGCGGATGGGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAg                   >  2:4963273/1‑96 (MQ=16)
      ttAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAg                   >  2:10721243/1‑96 (MQ=18)
      ttAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAg                   >  2:6440055/1‑96 (MQ=18)
       tAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGa                  >  1:6519271/1‑96 (MQ=18)
       tAACCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGa                  <  1:7889593/96‑1 (MQ=18)
       caaCCTTACAACGGCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGCTGAAACAGa                  >  1:11418038/2‑96 (MQ=11)
        aaCCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGaa                 <  2:4644938/96‑1 (MQ=18)
        aaCCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGaa                 <  1:1266311/96‑1 (MQ=18)
        aaCCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGaa                 <  1:3668956/96‑1 (MQ=18)
        aaCCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGaa                 <  2:6882163/96‑1 (MQ=18)
         acattACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAt                <  2:7730606/93‑1 (MQ=16)
         aCCTTACAACGCCTAAGATGTTTTGGAGGATGAGAGAAGATTTTCAGCCTGATACAGATTAACTCAGAACGCAGAAGCGGTCTGATGAAACAGAAt                <  1:3658701/96‑1 (MQ=11)
         aCCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAt                <  2:10060146/96‑1 (MQ=18)
         aCCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAt                <  1:6313325/96‑1 (MQ=18)
          ccTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAtt               >  2:2105434/1‑96 (MQ=18)
          ccTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAtt               <  2:7222076/96‑1 (MQ=18)
          ccTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAtt               >  1:7917947/1‑96 (MQ=18)
           cTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAttt              <  1:3190153/96‑1 (MQ=18)
           cTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAttt              <  1:9466924/96‑1 (MQ=18)
           cTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAttt              <  2:5568053/96‑1 (MQ=18)
           cTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAttt              <  1:11006043/96‑1 (MQ=18)
           cTTACAACGCCGAAGATGTTTTGCCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAAttt              <  1:10188856/96‑1 (MQ=16)
            ttACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTg             <  1:7034491/96‑1 (MQ=18)
            ttACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTg             >  1:797132/1‑96 (MQ=18)
             tACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGc            <  2:7472743/96‑1 (MQ=21)
             tACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGc            >  2:6625284/1‑96 (MQ=18)
             tACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGc            <  1:7187982/96‑1 (MQ=18)
              aCAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGcc           <  2:11457515/96‑1 (MQ=18)
              aCAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGcc           <  1:5634487/96‑1 (MQ=21)
              aCAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGcc           <  2:1695009/96‑1 (MQ=21)
               cAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTGAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCt          >  2:12642753/1‑96 (MQ=16)
               cAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGATACAGAATTTGCCt          <  1:10938532/96‑1 (MQ=16)
               cAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGcgg          <  1:11683996/96‑3 (MQ=16)
               cAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCt          <  2:3363857/96‑1 (MQ=18)
               cAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCt          <  1:2655000/96‑1 (MQ=18)
               cAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCt          <  1:5942976/96‑1 (MQ=18)
               cAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCt          <  1:3335096/96‑1 (MQ=18)
               cAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCt          <  2:12831552/96‑1 (MQ=18)
                aaCGCCGAAGATGTTTTGGGTTATGAGAGATGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTTTGATGAAACAGAATTTGACTg         <  1:7078332/96‑1 (MQ=11)
                aaCGCCGAAGATGTTTTGGCGGATGAGAGATGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTg         <  2:14091380/96‑1 (MQ=16)
                aaCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTg         <  2:11247320/96‑1 (MQ=21)
                aaCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTg         <  2:11290523/96‑1 (MQ=21)
                aaCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTg         >  2:11232110/1‑96 (MQ=18)
                aaCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTg         <  1:6039983/96‑1 (MQ=18)
                aaCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTg         >  2:10088208/1‑96 (MQ=18)
                aaCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTg         >  2:9149863/1‑96 (MQ=18)
                aaCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTg         <  1:13129475/96‑1 (MQ=18)
                 aCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTgg        <  2:13872877/96‑1 (MQ=21)
                 aCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTgg        <  1:2744730/96‑1 (MQ=18)
                 aCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTgg        <  2:3186303/96‑1 (MQ=18)
                 aCGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGACTGATACAGATTAAGTCAGAACGCAGAAGCGGTCTGACGAAACAGAATTTGCCTgg        <  2:7066651/96‑1 (MQ=11)
                 aCGCCGAAGATGTATTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTgg        <  1:9048822/96‑1 (MQ=16)
                  cGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggc       <  2:12440332/96‑1 (MQ=18)
                  cGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggc       <  1:8220509/96‑1 (MQ=18)
                   gCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcg      <  1:14037230/96‑1 (MQ=21)
                   gCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcg      <  2:11520285/96‑1 (MQ=18)
                   gCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcg      >  2:6213132/1‑96 (MQ=18)
                   gCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcg      <  1:12425427/96‑1 (MQ=21)
                   gCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcg      <  1:6672647/96‑1 (MQ=21)
                   gCCGAAGATGTTTTGGCAGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcg      <  2:13640238/96‑1 (MQ=16)
                    ccGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcgg     <  1:6965179/96‑1 (MQ=18)
                    ccGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcgg     <  2:5180490/96‑1 (MQ=18)
                    ccGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcgg     >  1:5617477/1‑96 (MQ=18)
                    ccGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcgg     >  2:11144411/1‑96 (MQ=18)
                     cGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcggc    >  2:1542844/1‑96 (MQ=18)
                     cGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcggc    <  1:1017840/96‑1 (MQ=21)
                     cGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcggc    >  1:8892580/1‑96 (MQ=18)
                     cGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcggc    <  1:9911585/96‑1 (MQ=21)
                     cGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcggc    >  1:6250589/1‑96 (MQ=18)
                     cGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTggcggc    >  2:11099336/1‑96 (MQ=18)
                      gAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGcc   >  2:11320019/1‑96 (MQ=18)
                      gAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGcc   <  1:12336422/96‑1 (MQ=18)
                      gAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGcc   >  2:13542295/1‑96 (MQ=18)
                      gAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGcc   >  2:7790593/1‑96 (MQ=18)
                      gAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGcc   <  2:2691437/96‑1 (MQ=21)
                      gAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGcc   >  2:941072/1‑96 (MQ=18)
                      gAAGATGTGTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGcc   >  1:12958952/1‑96 (MQ=16)
                      gAAGATGGTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGGCTGATGAAACAGAATTTGCCTGGCGGcc   >  1:14141718/1‑96 (MQ=255)
                       aaGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCg  >  1:647870/1‑96 (MQ=18)
                       aaGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCg  >  1:523548/1‑96 (MQ=18)
                       aaGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCg  >  2:8492107/1‑96 (MQ=18)
                          |                                                                                            
TGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATGAAACAGAATTTGCCTGGCGGCCG  >  NC_000913/3944218‑3944336

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑