BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,026,252	2 bp→GC	coding (110‑111/1164 nt)	fadA ←	thiolase I

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,026,252	0	C	G	100.0%	1527.8 / NA	400	T37S (ACG→AGC)	fadA	thiolase I
Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (201/199); total (201/199)
*	NC_000913	4,026,253	0	G	C	100.0%	1510.5 / NA	403	T37S (ACG→AGC)	fadA	thiolase I
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (204/199); total (204/199)

Only 100 of 437 total aligned reads displayed.

ATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGCGTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCATCG  >  NC_000913/4026162‑4026342

||

 ttAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGc                                                                                      <  1:5839614/96‑1 (MQ=255)

 ttAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATAGTCGCGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGc                                                                                      <  1:3770556/96‑1 (MQ=255)

  tAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCa                                                                                     <  2:7724274/96‑1 (MQ=255)

  tAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGGTACGCGCCAGCAGGCTACGCa                                                                                     >  2:3609764/1‑96 (MQ=255)

    aaaCCCTGCTCCAGCGTCTGCTGCACACAAACCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCCGCAGTCTACGCAtt                                                                                   >  2:1619684/1‑96 (MQ=255)

     aaCCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTa                                                                                  <  1:13535710/96‑1 (MQ=255)

      aCCCTGCTCCAGCGTCTGCTGCACCCAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTaa                                                                                 <  1:2003307/96‑1 (MQ=255)

      aCCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTaa                                                                                 <  2:7159385/96‑1 (MQ=255)

        ccTGCTCCAGCGTCTGCTGCACACAACCCAAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAAt                                                                               <  1:3152970/96‑1 (MQ=255)

           gCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAg                                                                            >  1:11631064/1‑96 (MQ=255)

             tCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGGTACGCACCAGCAGGCAACGCATTAAATGAGCg                                                                          >  1:596762/1‑96 (MQ=255)

                aacGTCTGGTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgat                                                                       >  1:10494793/3‑95 (MQ=255)

                aGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgag                                                                       >  1:5323388/1‑96 (MQ=255)

                 gCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAAAGAGGGgaga                                                                      >  1:4080961/1‑96 (MQ=255)

                  cGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgaggg                                                                     >  2:6641739/1‑94 (MQ=255)

                   gTCTGCTGCACACACCCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgagaga                                                                    <  2:10021862/96‑1 (MQ=255)

                   gTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGGCGACGCTTCCAGCGCCGGGTTACGCGCAAGCAGGCTACGCATTAAATGAGAGgagaga                                                                    >  2:12620518/1‑96 (MQ=255)

                   gTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgaggga                                                                    >  2:11156616/1‑96 (MQ=255)

                   gTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGgagaga                                                                    <  2:8333476/96‑1 (MQ=255)

                    tCTGCTGCACACACCCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAt                                                                   <  2:1201476/96‑1 (MQ=255)

                    tCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAt                                                                   <  2:14036132/96‑1 (MQ=255)

                     ctgctcCAAAAACCCCTAGAAATTACCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtc                                                                  <  2:13701420/96‑1 (MQ=255)

                      tgctgcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCGTTAAATGAGCGGAGAGAtcg                                                                 >  1:2681073/1‑95 (MQ=255)

                       gctgcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtctt                                                                >  2:4410405/1‑96 (MQ=255)

                       gctgcACACAACCCCAGTAAATAACGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtctt                                                                <  1:12566487/96‑1 (MQ=255)

                         tgcACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGAtcttct                                                              <  2:4167040/96‑1 (MQ=255)

                            acacaACCCCAGTAAATATCGTCCGGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgca                                                           <  1:10102798/96‑1 (MQ=255)

                             cacaACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgcac                                                          <  2:13518120/96‑1 (MQ=255)

                             cacaACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgcac                                                          >  1:13663381/1‑96 (MQ=255)

                             cacaACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgcac                                                          >  2:6239527/1‑96 (MQ=255)

                             cacaACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgcac                                                          <  2:5086507/96‑1 (MQ=255)

                             cacaACCCCAGTAAATATCGGCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgcac                                                          <  2:10582647/96‑1 (MQ=255)

                               caACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGGTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgcacgc                                                        >  2:5442349/1‑96 (MQ=255)

                                aaCCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgcacgca                                                       >  1:8037232/1‑96 (MQ=255)

                                aaCCCCAGTAAATATCGGCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgcacgca                                                       <  1:4842662/96‑1 (MQ=255)

                                 aCCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTgcacgcac                                                      <  2:5995117/96‑1 (MQ=255)

                                  ccccAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGcacgcacg                                                     <  2:7354024/96‑1 (MQ=255)

                                  ccccAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGcacgcacg                                                     <  2:13589208/96‑1 (MQ=255)

                                    ccAGTAAATATCGTCGAGGGCCGCCGCCTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGtt                                                   >  1:4969016/1‑96 (MQ=255)

                                     cAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTa                                                  >  2:7882155/1‑96 (MQ=255)

                                     cAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTa                                                  <  2:1953820/96‑1 (MQ=255)

                                     cAGTAAATAACGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTCCGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTa                                                  <  2:1013333/96‑1 (MQ=255)

                                       gTAAATATCGCCGAGGGCCGCCCCTTCCAGCGCCGGGTTACGCGCCGCCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACCTTACg                                                >  1:2281351/1‑96 (MQ=255)

                                        tAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGa                                               <  1:13359868/96‑1 (MQ=255)

                                          aaTATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGaaa                                             <  2:2225242/96‑1 (MQ=255)

                                           atatCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGaaaa                                            >  2:8985211/1‑96 (MQ=255)

                                           atatCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGaaaa                                            <  1:3569886/96‑1 (MQ=255)

                                             atCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGc                                          <  1:10909779/96‑1 (MQ=255)

                                             atCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGc                                          >  2:4005895/1‑96 (MQ=255)

                                                gtcgAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCAcc                                       >  1:6670215/1‑96 (MQ=255)

                                                 tcgAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCg                                      <  2:11564023/96‑1 (MQ=255)

                                                   gAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGcc                                    >  1:7288387/1‑96 (MQ=255)

                                                   gAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGcc                                    >  1:5556344/1‑96 (MQ=255)

                                                     gggCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCt                                  <  2:9562819/96‑1 (MQ=255)

                                                     gggCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCt                                  >  2:2730963/1‑96 (MQ=255)

                                                     cggCCGCCGCTTCGAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCt                                  >  1:11402990/2‑96 (MQ=255)

                                                      ggCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCtt                                 <  1:2894885/96‑1 (MQ=255)

                                                      ggCCGCCGCTTCCAGCGACGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCtt                                 <  1:11542758/96‑1 (MQ=255)

                                                       gccgccGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTc                                <  2:11873493/96‑1 (MQ=255)

                                                       gccgccGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTc                                <  2:12366739/96‑1 (MQ=255)

                                                       gccgccGCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTc                                <  1:8887443/96‑1 (MQ=255)

                                                       cccgccgCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTTCGCACTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCttt                                <  1:11358850/95‑2 (MQ=255)

                                                        ccgccgCTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCg                               <  1:14394368/96‑1 (MQ=255)

                                                          gccgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGaa                             <  2:3105961/96‑1 (MQ=255)

                                                          gccgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGaa                             >  1:13981900/1‑96 (MQ=255)

                                                           ccgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAAc                            <  1:8552453/96‑1 (MQ=255)

                                                            cgcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCCCGTTACGAAAAGCACCGCCCTTCGAACg                           <  1:1789873/96‑1 (MQ=255)

                                                             gcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACgg                          <  2:5817020/96‑1 (MQ=255)

                                                             gcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACgg                          >  2:6930654/1‑96 (MQ=255)

                                                             gcTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCGTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACgg                          >  1:9113374/1‑96 (MQ=255)

                                                              cTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGc                         >  1:3345516/1‑96 (MQ=255)

                                                              cTTCCAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGc                         >  2:10855965/1‑96 (MQ=255)

                                                                  cAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCAt                     >  2:1851305/1‑96 (MQ=255)

                                                                  cAGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCAt                     >  2:4986965/1‑96 (MQ=255)

                                                                   aGCGCCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATc                    >  1:1204286/1‑96 (MQ=255)

                                                                    gcgcCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCg                   <  1:8415027/96‑1 (MQ=255)

                                                                     cgcCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGAACCGCCCTTCGAACGGCCCATCgg                  >  2:2278729/1‑96 (MQ=255)

                                                                      gcCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCggg                 >  2:9219584/1‑96 (MQ=255)

                                                                      gcCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCggg                 <  1:9761027/96‑1 (MQ=255)

                                                                      gcCGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTACGAACGGCCCATCggg                 <  1:7005498/96‑1 (MQ=255)

                                                                       ccGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCgggg                >  1:9260538/1‑96 (MQ=255)

                                                                       ccGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCgggg                >  1:157026/1‑96 (MQ=255)

                                                                        cGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGt               <  1:4231672/96‑1 (MQ=255)

                                                                        cGGGTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGt               <  2:2514508/96‑1 (MQ=255)

                                                                         gggTTACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTg              >  1:2140454/1‑96 (MQ=255)

                                                                             tACGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGaa          >  1:12203104/1‑96 (MQ=255)

                                                                              aCGCGCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCggag         >  2:852566/1‑93 (MQ=255)

                                                                               cgcgCCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAAtt        <  1:171693/96‑1 (MQ=255)

                                                                                gcgcCAGCAGGCTCCGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTg       <  1:635169/96‑1 (MQ=255)

                                                                                 cgcCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGCGCGAATTGc      >  2:4716440/1‑96 (MQ=255)

                                                                                 cgcCAGCAGGCCACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGc      <  2:12827128/96‑1 (MQ=255)

                                                                                  gcCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCa     <  1:13042619/96‑1 (MQ=255)

                                                                                  gcCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCa     >  1:7742478/1‑96 (MQ=255)

                                                                                  gcCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCa     >  2:8656299/1‑96 (MQ=255)

                                                                                  gcCAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCa     >  1:8681220/1‑96 (MQ=255)

                                                                                   ccAGCAGGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCAt    >  1:4507428/1‑96 (MQ=255)

                                                                                    cagcagGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCATc   <  1:7860288/96‑1 (MQ=255)

                                                                                    cagcagGCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCATc   >  1:8200237/1‑96 (MQ=255)

                                                                                     agcaggCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCATCg  >  2:14294718/1‑96 (MQ=255)

                                                                                     agcaggCTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCATCg  >  2:6544477/1‑96 (MQ=255)

||

ATTAAAACCCTGCTCCAGCGTCTGCTGCACACAACCCCAGTAAATATCGTCGAGGGCCGCCGCTTCCAGCGCCGGGTTACGCGCCAGCAGCGTACGCATTAAATGAGCGGAGAGATCTTCTGCACGCACGTTACGAAAAGCACCGCCCTTCGAACGGCCCATCGGGGTGCGAATTGCATCG  >  NC_000913/4026162‑4026342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`