BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,166,935	2 bp→CG	coding (312‑313/483 nt)	b3023 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,166,935	0	G	C	100.0%	1861.3 / NA	476	L105V (CTT→GTT)	b3023	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (244/232); total (244/232)
*	NC_000913	3,166,936	0	C	G	99.8%	1846.6 / ‑5.7	475	Q104H (CAG→CAC)	b3023	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/1); major base G (242/231); minor base A (1/0); total (243/232)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01

Only 100 of 514 total aligned reads displayed.

CGGTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAAGCTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCCGCA  >  NC_000913/3166846‑3167025

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cGGTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCg                                                                                      >  2:11171763/1‑96 (MQ=255)

 ggTTCTTTACGCATTTTCTCGCCGCTTGCAGACAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCgg                                                                                     <  2:8145986/96‑1 (MQ=255)

 ggTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCgg                                                                                     >  2:13333694/1‑96 (MQ=255)

  gTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCggg                                                                                    <  1:8205857/96‑1 (MQ=255)

   tGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGGGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGc                                                                                   >  1:14208049/1‑96 (MQ=255)

    gCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGcc                                                                                  >  1:7430159/1‑96 (MQ=255)

    gCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGcc                                                                                  <  2:13811386/96‑1 (MQ=255)

     cTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCa                                                                                 >  2:286544/1‑96 (MQ=255)

     cTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCa                                                                                 <  1:5834357/96‑1 (MQ=255)

       ttACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCGGCTCGCCAACGTGGTGGGCCCCg                                                                               >  1:2893411/1‑96 (MQ=255)

        tACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGCATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACgg                                                                              <  2:12212232/96‑1 (MQ=255)

        tACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACgg                                                                              >  1:2459126/1‑96 (MQ=255)

        tACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACgg                                                                              <  2:3729555/96‑1 (MQ=255)

         aCGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGc                                                                             >  2:465100/1‑96 (MQ=255)

          cGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGGCACGGCa                                                                            >  2:8592051/1‑96 (MQ=255)

           gCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGGCCAGCTCGCCAACGTGGCGGGGCACCGCAt                                                                           >  1:12728472/1‑96 (MQ=255)

              ttttCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAAc                                                                        <  2:59760/96‑1 (MQ=255)

              ttttCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAAc                                                                        <  2:8343390/96‑1 (MQ=255)

              ttttCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAAc                                                                        <  2:6919227/96‑1 (MQ=255)

              ttttCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAAc                                                                        >  2:1232592/1‑96 (MQ=255)

               tttCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACg                                                                       >  1:4581708/1‑96 (MQ=255)

               tttCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACg                                                                       <  2:2618756/96‑1 (MQ=255)

                ttCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCAGAACGt                                                                      >  1:5658691/1‑96 (MQ=255)

                 tctcGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCCCCAACGTGGCGGGCCCCGGCAGAACGTc                                                                     >  1:123526/1‑96 (MQ=255)

                  ctcGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTcc                                                                    <  1:11106032/96‑1 (MQ=255)

                  ctagccgcTTGCAGGCAGCCAGTGGAGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTcc                                                                    <  1:10682343/93‑1 (MQ=255)

                    cgccgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCAc                                                                  >  1:8483718/1‑96 (MQ=255)

                    cgccgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATACCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCAc                                                                  <  2:10581792/96‑1 (MQ=255)

                       cgcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCgg                                                               <  1:13200017/96‑1 (MQ=255)

                        gcTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGt                                                              >  2:7616619/1‑96 (MQ=255)

                         cTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCggca                                                             >  1:9520608/1‑94 (MQ=255)

                         cTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTa                                                             >  2:7066903/1‑96 (MQ=255)

                            gcaggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGt                                                          <  1:7266195/96‑1 (MQ=255)

                             caggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCCCCGGGAAGtt                                                         >  1:2220029/1‑96 (MQ=255)

                             caggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGtt                                                         <  1:5127099/96‑1 (MQ=255)

                             caggcagCCAGTGACGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGtt                                                         >  1:13418618/1‑96 (MQ=255)

                              aggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCCGTAAGttt                                                        >  2:10174960/1‑95 (MQ=255)

                              aggcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGGCCACCGGGAAGTTc                                                        >  1:9134031/1‑96 (MQ=255)

                                gcagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCAc                                                      <  1:429544/96‑1 (MQ=255)

                                 cagCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCAAAACGTCCACCGGTAAGATCatc                                                     >  2:11984577/1‑94 (MQ=255)

                                  agCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCa                                                    >  1:3646301/1‑96 (MQ=255)

                                   gCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCAt                                                   <  1:4725619/96‑1 (MQ=255)

                                      aGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGGCCACCGGGAAGTTCACCAGTGc                                                >  1:5289696/1‑96 (MQ=255)

                                         ggCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTca                                             >  2:2055170/1‑96 (MQ=255)

                                         ggCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTca                                             >  2:5613056/1‑96 (MQ=255)

                                         ggCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTca                                             <  1:5526076/96‑1 (MQ=255)

                                          gCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCCCCGGTAAGTTCACCATTGCTcac                                            <  1:4074901/96‑1 (MQ=255)

                                          gCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGACACGGCATAACGTCCACCGGTAAGTTCACCATTGCTcac                                            >  2:5404773/1‑96 (MQ=255)

                                           cGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTcacc                                           >  1:12036502/1‑95 (MQ=255)

                                           cGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTcaca                                           <  1:12270861/96‑1 (MQ=255)

                                            gAATGATTCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCacac                                          <  2:3108987/96‑1 (MQ=255)

                                            gAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCacac                                          >  2:8775175/1‑96 (MQ=255)

                                             aaTGATGCCCCATGCCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACAcc                                         >  1:10942106/1‑96 (MQ=255)

                                             aaTGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACAcc                                         >  2:13063456/1‑96 (MQ=255)

                                              atgatgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCa                                        >  1:8919746/1‑96 (MQ=255)

                                               tgatgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCAt                                       >  1:9907485/1‑96 (MQ=255)

                                               tgatgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCAt                                       >  2:3516878/1‑96 (MQ=255)

                                               tgatgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGAGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCAt                                       >  1:13025884/1‑96 (MQ=255)

                                                gatgCCCCATACCGTGTGTGAAATATCTTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATa                                      <  1:7061198/96‑1 (MQ=255)

                                                gatgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATa                                      >  2:11340471/1‑96 (MQ=255)

                                                 atgCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGGCCACCGGGAAGTTCAACATTGCTCACACCATaa                                     >  2:7271948/1‑96 (MQ=255)

                                                   gCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGGTCACCATTGCTCACACCATAACg                                   >  2:11130578/1‑96 (MQ=255)

                                                    ccccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGTGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGa                                  <  1:10232356/96‑1 (MQ=255)

                                                     cccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAt                                 >  2:13603970/1‑96 (MQ=255)

                                                     cccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAt                                 <  1:3415650/96‑1 (MQ=255)

                                                     cccATACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGAt                                 >  1:6453051/1‑96 (MQ=255)

                                                        aTACCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTAt                              >  2:7918111/1‑96 (MQ=255)

                                                         tACCGTATGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTAtt                             <  1:11312671/96‑2 (MQ=255)

                                                          aCCGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTAttg                            <  1:10805592/96‑3 (MQ=255)

                                                          aCCGCGTGTAAAATATCGTCAAGCTCGCCACCGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACCCCATAAAGATTATCg                            <  1:1509739/96‑1 (MQ=255)

                                                           ccGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCgg                           <  2:9093105/96‑1 (MQ=255)

                                                            cGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCggg                          >  2:7777436/1‑96 (MQ=255)

                                                            cGTGTGTGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCggg                          >  1:9644346/1‑96 (MQ=255)

                                                            cGTGTGCGAAAGATCGTCCAGCTCGCCAACGTAGCGCGCCACGGCATAACATCCACCGGTAACTTCACCATTGCTCACACCATAACGTTTATCggg                          <  2:12959329/96‑1 (MQ=255)

                                                             gtgtgtGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGa                         >  2:13220876/1‑96 (MQ=255)

                                                             gtgtgtGAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGGCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGa                         >  2:14258675/1‑96 (MQ=255)

                                                              tgtgtgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCCCCATTGCTCACACCATAACGATTATCGGGaa                        <  1:11572171/96‑1 (MQ=255)

                                                                 gtgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCg                     <  2:9830180/96‑1 (MQ=255)

                                                                 gtgAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCg                     <  2:496471/96‑1 (MQ=255)

                                                                   gAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGt                   <  1:6842119/96‑1 (MQ=255)

                                                                   gAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGt                   <  2:6306842/96‑1 (MQ=255)

                                                                   gAAATATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGt                   <  2:1608098/96‑1 (MQ=255)

                                                                    aaaTATCGCCCAGCTCGCCCGCGTGGCGGGCCCCGGCATAACGTCCACCGGTAAGTTCCCCATTGCTCACACCATAACGATTATCGGGAATCGGtt                  <  1:1970878/96‑1 (MQ=255)

                                                                     aaTATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTc                 <  1:6270014/96‑1 (MQ=255)

                                                                     aaTATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTc                 <  2:10858003/96‑1 (MQ=255)

                                                                     aaTATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTc                 <  2:9334521/96‑1 (MQ=255)

                                                                     aaTATCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGGAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTc                 >  2:12673954/1‑96 (MQ=255)

                                                                      atatCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCg                <  2:2424986/96‑1 (MQ=255)

                                                                       tatCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGc               >  1:13782572/1‑96 (MQ=255)

                                                                         tCGTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTa             <  1:11714033/96‑1 (MQ=255)

                                                                         tCGTCCAGCCCGCCAACGTGGCGGGCCACGCCATAACGTCCACCGGTAAGTTCACCATTGCTCACCCCATAACGATTATCGGGAATCGGTTCGCTa             <  2:6593573/96‑1 (MQ=255)

                                                                           gTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAAc           >  2:4283886/1‑96 (MQ=255)

                                                                           gTCCAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAAc           >  2:11516334/1‑96 (MQ=255)

                                                                              cAGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCt        <  2:9551215/96‑1 (MQ=255)

                                                                               aGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTg       <  1:1665461/96‑1 (MQ=255)

                                                                               aGCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTg       <  2:8979388/96‑1 (MQ=255)

                                                                                gCTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGc      <  2:7430159/96‑1 (MQ=255)

                                                                                 cTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGcc     >  2:4071333/1‑96 (MQ=255)

                                                                                 cTCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGcc     <  2:11752757/96‑1 (MQ=255)

                                                                                  tCGCCAACGTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTAGCTCAAGCTGCCg    >  2:5134988/1‑96 (MQ=255)

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CGGTGCTTTACGCATTTTCTCGCCGCTTGCAGGCAGCCAGTGGCGAATGATGCCCCATACCGTGTGTGAAATATCGTCCAGCTCGCCAAGCTGGCGGGCCACGGCATAACGTCCACCGGTAAGTTCACCATTGCTCACACCATAACGATTATCGGGAATCGGTTCGCTAACGCTGCCGCA  >  NC_000913/3166846‑3167025

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`