BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,957,560	+C	intergenic (‑129/‑732)	ppiC ← / → rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,957,558	1	.	C	100.0%	533.5 / NA	146	intergenic (‑127/‑734)	ppiC/rep	peptidyl‑prolyl cis‑trans isomerase C/rep helicase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (64/82); total (64/82)

Only 100 of 154 total aligned reads displayed.

TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑GC‑TCGCAGGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATG  >  NC_000913/3957470‑3957645

tAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGT‑c‑c                                                                                       <  1:4646966/93‑1 (MQ=255)

 aGCATGATCCGCAGATGCTAGCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGT‑c‑cc                                                                                      <  1:894075/93‑2 (MQ=255)

   cATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGT‑c‑cctc                                                                                    >  2:4558835/1‑90 (MQ=255)

    aTGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGT‑c‑cctca                                                                                   <  1:3594481/93‑5 (MQ=255)

        tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAggg                                                                                >  1:6015253/1‑93 (MQ=255)

        tCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAggg                                                                                >  2:4325677/1‑93 (MQ=255)

        tCCGCAAATGCAAACGTAATGGCCAGCCAGGGAGTGGCTGGTAAATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAggg                                                                                <  1:1513959/93‑1 (MQ=255)

         ccGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAgggg                                                                               <  2:5923120/93‑1 (MQ=255)

          cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGga                                                                              <  2:1189619/93‑1 (MQ=255)

          cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGga                                                                              <  2:3388717/93‑1 (MQ=255)

          cGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGga                                                                              <  1:5241577/93‑1 (MQ=255)

               aTGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGaaaa                                                                         >  1:308986/1‑93 (MQ=255)

                tGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGGACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAAc                                                                        >  1:2605310/1‑93 (MQ=255)

                 gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACt                                                                       >  1:2938992/1‑93 (MQ=255)

                 gCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCGTCGCAGGTCC‑CTCAAGGGGAGAAAACt                                                                       >  2:1293094/1‑93 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAg                                                                    <  2:1925912/93‑1 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAg                                                                    <  1:1018440/93‑1 (MQ=255)

                    aaCGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAg                                                                    >  1:1900277/1‑93 (MQ=255)

                       gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGc                                                                 <  2:1798259/93‑1 (MQ=255)

                       gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGc                                                                 >  1:3249213/1‑93 (MQ=255)

                       gTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGT‑CTCTCAAGGGGAGAAAACTTAGGGc                                                                 >  1:3443540/1‑93 (MQ=255)

                        tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGcc                                                                <  1:1056185/93‑1 (MQ=255)

                        tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGcc                                                                >  2:1670348/1‑93 (MQ=255)

                        tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGcc                                                                <  1:770468/93‑1 (MQ=255)

                        tAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGcc                                                                <  2:5958304/93‑1 (MQ=255)

                         aaTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCct                                                               <  2:6071234/93‑1 (MQ=255)

                          aTTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCctc                                                              <  2:4959993/93‑1 (MQ=255)

                            tGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTa                                                            <  1:2866087/93‑1 (MQ=255)

                             gtcagtcaGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTAt                                                           <  1:3707158/93‑1 (MQ=255)

                               cagtcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATgg                                                         >  2:4989816/1‑93 (MQ=255)

                                agtcagGGAGTGGCTGACACATATATGGCAAAACCCCTGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATggg                                                        <  2:2739448/93‑1 (MQ=255)

                                  tgagGGAGTGGCTGGTACATATATGGCAAAAGCCGGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt                                                      <  2:1298734/91‑1 (MQ=255)

                                  tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt                                                      >  1:4757245/1‑93 (MQ=255)

                                  tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt                                                      >  1:3289571/1‑93 (MQ=255)

                                  tcagGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCt                                                      >  2:1566262/1‑93 (MQ=255)

                                    agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGGGAAAACTTAGGGCCCCCATggggtcc                                                    >  2:1508563/1‑89 (MQ=255)

                                    agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                                    <  2:2358848/93‑1 (MQ=255)

                                    agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                                    <  1:619340/93‑1 (MQ=255)

                                    agGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTAc                                                    >  2:1508564/1‑93 (MQ=255)

                                     gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa                                                   >  2:4555456/1‑93 (MQ=255)

                                     gggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑GGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACa                                                   >  2:1727812/1‑93 (MQ=255)

                                      ggAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaa                                                  <  2:3183266/93‑1 (MQ=255)

                                       gAGTGGCTGGTACATATATGGCAAAAGCCGGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                                                 <  2:4444119/93‑1 (MQ=255)

                                       gAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACaaa                                                 <  2:585246/93‑1 (MQ=255)

                                          tGGCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTc                                              >  1:4814745/1‑93 (MQ=255)

                                            gCTGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCAt                                            <  1:2671362/93‑1 (MQ=255)

                                              tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                                          <  1:5584220/93‑1 (MQ=255)

                                              tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                                          >  1:4211893/1‑93 (MQ=255)

                                              tGGTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTa                                          >  1:1533937/1‑93 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTTTATGGGCTACAAAGTCATTAt                                         <  1:4971884/93‑1 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                                         >  1:5911035/1‑93 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                                         <  2:2162068/93‑1 (MQ=255)

                                               ggTACATATATGGCAAAAGCCCGAAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTAt                                         <  1:2561476/93‑1 (MQ=255)

                                                gTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                                        >  1:3562583/1‑93 (MQ=255)

                                                gTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATc                                        <  2:3238432/93‑1 (MQ=255)

                                                gTACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGAGCCTCTATGGGCTACAAAGTCATTATc                                        >  2:235248/1‑93 (MQ=255)

                                                 tACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg                                       >  2:4773745/1‑93 (MQ=255)

                                                 tACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg                                       >  2:2836440/1‑93 (MQ=255)

                                                 tACATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCg                                       <  1:4456508/93‑1 (MQ=255)

                                                  aCATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgg                                      >  1:4966817/1‑93 (MQ=255)

                                                   cATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                                     <  1:3971308/93‑1 (MQ=255)

                                                   cATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                                     >  2:2286091/1‑93 (MQ=255)

                                                   cATATATGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCggg                                     >  1:5961297/1‑93 (MQ=255)

                                                    atatatGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg                                    >  1:3787/1‑93 (MQ=255)

                                                    atatatGGCAAAAGCCCGGAAAATCC‑GGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCgggg                                    >  2:802404/1‑93 (MQ=255)

                                                     tatatGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                                   <  1:5811190/93‑1 (MQ=255)

                                                     tatatGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                                   >  2:260567/1‑93 (MQ=255)

                                                     tatatGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                                   >  2:4207929/1‑93 (MQ=255)

                                                     aatatGGCAAAAGCCCGGAAANTCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGa                                   <  2:1772790/92‑1 (MQ=255)

                                                      atagGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGAt                                  <  2:158199/93‑1 (MQ=255)

                                                       tatGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg                                 <  2:5639335/93‑1 (MQ=255)

                                                       tatGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATg                                 <  1:3159988/93‑1 (MQ=255)

                                                         tGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt                               <  1:5699089/93‑1 (MQ=255)

                                                         tGGCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGt                               <  2:2594229/93‑1 (MQ=255)

                                                          ggCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtt                              >  2:674351/1‑93 (MQ=255)

                                                           gCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta                             <  1:870907/93‑1 (MQ=255)

                                                           gCAAAAGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGtta                             <  1:3366842/93‑1 (MQ=255)

                                                              aaaGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattt                          <  2:417131/93‑1 (MQ=255)

                                                               aaGCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttt                         <  2:3318719/93‑1 (MQ=255)

                                                                aGCCCGGAAAATCC‑GGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttatttta                        >  2:5262722/1‑93 (MQ=255)

                                                                 gCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat                       <  2:1168370/93‑1 (MQ=255)

                                                                 gCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat                       >  2:3086145/1‑93 (MQ=255)

                                                                 gCCCGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttat                       >  2:2094205/1‑93 (MQ=255)

                                                                  cccGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt                      <  1:1553052/93‑1 (MQ=255)

                                                                  cccGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt                      >  1:469397/1‑93 (MQ=255)

                                                                  cccGGAAAATCC‑GGGCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGttattttatt                      >  1:2499675/1‑93 (MQ=255)

                                                                   ccGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg                     >  2:3619124/1‑93 (MQ=255)

                                                                   ccGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg                     >  1:560076/1‑93 (MQ=255)

                                                                   ccGGAAAATCCGG‑GCTTCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTg                     <  2:3791210/93‑1 (MQ=255)

                                                                                  cttCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCg       >  2:3060731/3‑93 (MQ=255)

                                                                                   ttCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGa      >  1:811851/2‑93 (MQ=255)

                                                                                   ttCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGa      <  1:2432112/92‑1 (MQ=255)

                                                                                    tCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGat     <  2:1035643/93‑1 (MQ=255)

                                                                                    tCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGat     <  2:2204374/93‑1 (MQ=255)

                                                                                    tCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGat     <  2:3057886/93‑1 (MQ=255)

                                                                                    tCGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGat     >  1:1733906/1‑93 (MQ=255)

                                                                                     cGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGata    <  1:1168048/93‑1 (MQ=255)

                                                                                     cGCAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGata    <  1:636644/93‑1 (MQ=255)

                                                                                       cAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATg  <  1:5362107/93‑1 (MQ=255)

                                                                                       cAGGTCC‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATg  >  2:835629/1‑93 (MQ=255)

TAGCATGATCCGCAGATGCTAACGTAATTGTCAGTCAGGGAGTGGCTGGTACATATATGGCAAAAGCCCGGAAAATCC‑T‑GC‑TCGCAGGT‑C‑CTCAAGGGGAGAAAACTTAGGGCCTCTATGGGCTACAAAGTCATTATCGGGGATGGTTATTTTATTGTCAATTTATGAGCGATATG  >  NC_000913/3957470‑3957645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`