BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,008,375	+A	coding (458/516 nt)	b4555 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,008,372	1	.	A	98.8%	298.8 / ‑3.7	82	coding (455/516 nt)	b4555	hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (1/0); new base A (17/64); total (18/64)
Fisher's exact test for biased strand distribution p-value = 2.20e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 102 total aligned reads displayed.

GCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑C‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCC  >  NC_000913/4008280‑4008449

gCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑c                                                                                          >  1:4092392/1‑93 (MQ=255)

gCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑c                                                                                          <  1:2141149/93‑1 (MQ=255)

gCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGGTT‑c                                                                                          >  1:421874/1‑93 (MQ=255)

gCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑AGCGTTT‑c                                                                                          >  2:5519001/1‑93 (MQ=255)

gCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGATTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑c                                                                                          >  2:2360167/1‑93 (MQ=255)

 cTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGTCTTT‑C‑a                                                                                        >  1:2393153/1‑93 (MQ=255)

  tGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGG‑GGCGTTT‑cca                                                                                        >  1:5018815/1‑91 (MQ=255)

     aGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑C‑aaaag                                                                                    <  2:4380185/93‑3 (MQ=255)

      gCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGTGC‑GGAGGTT‑C‑aaaagg                                                                                   >  1:3180641/1‑90 (MQ=255)

      gCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGGTT‑C‑aaaagg                                                                                   >  1:199396/1‑90 (MQ=255)

       cAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑C‑aaaaggc                                                                                  <  2:5461928/93‑5 (MQ=255)

         ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCa                                                                                 <  2:5859777/93‑1 (MQ=255)

         ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCa                                                                                 <  2:3091291/93‑1 (MQ=255)

         ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCa                                                                                 >  2:4745399/1‑93 (MQ=255)

         ggCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCa                                                                                 <  2:4395526/93‑1 (MQ=255)

          gCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCAt                                                                                <  1:1256831/93‑1 (MQ=255)

          gCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCAt                                                                                <  1:1256830/93‑1 (MQ=255)

          gCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCAt                                                                                <  2:2523065/93‑1 (MQ=255)

          gCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCAt                                                                                <  1:4486250/93‑1 (MQ=255)

          gCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCAt                                                                                <  1:942351/93‑1 (MQ=255)

           cGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATg                                                                               <  1:701088/93‑1 (MQ=255)

           cGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATg                                                                               <  2:195554/93‑1 (MQ=255)

            gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATgc                                                                              <  1:1778278/93‑1 (MQ=255)

            gATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGACATgc                                                                              >  1:827246/1‑93 (MQ=255)

             aTTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGGGGTTT‑C‑AAAGGCCATgcg                                                                             >  1:4907439/1‑93 (MQ=255)

             aTTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGGTT‑CAAAAGGCCATgcg                                                                             >  2:1306226/1‑93 (MQ=255)

              ttAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATgcgc                                                                            <  1:352098/93‑1 (MQ=255)

              atAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATgcgc                                                                            <  2:2137589/92‑1 (MQ=255)

               tAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCt                                                                           <  2:5860088/93‑1 (MQ=255)

               tAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCt                                                                           <  2:3784946/93‑1 (MQ=255)

                   gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGaa                                                                       <  1:3054851/93‑1 (MQ=255)

                   gCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAAGCCATGCGCTGGaa                                                                       >  2:5806110/1‑93 (MQ=255)

                    cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAg                                                                      >  1:616201/1‑93 (MQ=255)

                    cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAg                                                                      <  1:5443504/93‑1 (MQ=255)

                    cTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGGTT‑CAAAAGGCCATGCGCTGGAAg                                                                      >  2:1915592/1‑93 (MQ=255)

                     tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTTGGAg‑g                                                                    >  1:5331944/1‑93 (MQ=255)

                     tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgc                                                                     <  2:2367467/93‑2 (MQ=255)

                     tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgc                                                                     <  1:4510488/93‑2 (MQ=255)

                     tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgc                                                                     <  2:4835183/93‑2 (MQ=255)

                     tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgc                                                                     <  1:1823767/93‑2 (MQ=255)

                     tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgc                                                                     <  1:61034/93‑2 (MQ=255)

                     tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAg‑g                                                                    >  1:1238839/1‑93 (MQ=255)

                     tCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGGTT‑CAAAAGGCCATGCGCTGGGAg‑g                                                                    >  2:246032/1‑93 (MQ=255)

                      cGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcg                                                                    <  1:1055401/93‑3 (MQ=255)

                      cGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcg                                                                    <  1:4583644/93‑3 (MQ=255)

                       gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcgg                                                                   <  2:4594730/93‑4 (MQ=255)

                       gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcgg                                                                   >  1:378179/1‑90 (MQ=255)

                       gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcgg                                                                   <  1:4328415/93‑4 (MQ=255)

                       gTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGGTT‑CAAAAGGCCATGGGCTGGGAgcgg                                                                   >  2:3886453/1‑90 (MQ=255)

                        ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGGCATGCGCTGGAAgcggg                                                                  >  2:4431194/1‑89 (MQ=255)

                        ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcggt                                                                  <  1:5689436/93‑5 (MQ=255)

                        ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcggt                                                                  <  1:4658164/93‑5 (MQ=255)

                        ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcggt                                                                  <  2:3513598/93‑5 (MQ=255)

                        ttGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAgcggt                                                                  <  2:2513188/93‑5 (MQ=255)

                               gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aag                                                       >  2:5666223/1‑92 (MQ=255)

                               gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aag                                                       >  1:2245207/1‑92 (MQ=255)

                               gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAAGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aag                                                       >  1:383212/1‑92 (MQ=255)

                                aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTTCC‑AAAGGCCATGCGCTGGGAGCGGTGGCG‑‑‑‑aaga                                                      >  2:5218446/1‑91 (MQ=255)

                                aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga                                                      <  1:4210164/93‑3 (MQ=255)

                                aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGGTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga                                                      >  2:3437448/1‑91 (MQ=255)

                                aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGAGATT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga                                                      >  2:5286486/1‑91 (MQ=255)

                                 tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa                                                     <  2:1335952/93‑4 (MQ=255)

                                 tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa                                                     >  1:6051407/1‑90 (MQ=255)

                                 tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa                                                     <  1:2952901/93‑4 (MQ=255)

                                                                  tCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAATGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt                        <  1:1901182/93‑1 (MQ=255)

                                                                  tCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt                        <  2:2842303/93‑1 (MQ=255)

                                                                  tCTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt                        >  2:3190494/1‑93 (MQ=255)

                                                                   cTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGttt                       <  1:4465851/93‑2 (MQ=255)

                                                                   cTGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGttt                       <  1:2334120/93‑2 (MQ=255)

                                                                    tGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                      <  1:1737083/93‑3 (MQ=255)

                                                                    tGGAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg                      <  1:4989388/93‑3 (MQ=255)

                                                                      gAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt                    <  2:226086/93‑5 (MQ=255)

                                                                      gAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt                    <  2:6069960/93‑5 (MQ=255)

                                                                      gAAGTGATGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt                    <  1:4817457/93‑5 (MQ=255)

                                                                             tGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa             <  2:2950850/93‑1 (MQ=255)

                                                                             tGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa             <  2:4924566/93‑1 (MQ=255)

                                                                             tGGCGGGC‑GGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa             <  1:2302993/93‑1 (MQ=255)

                                                                              ggcgggc‑gGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt            <  1:1022573/93‑1 (MQ=255)

                                                                              ggcgggc‑gGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt            <  2:2143856/93‑1 (MQ=255)

                                                                                ggggc‑ggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGa          <  2:3840682/92‑1 (MQ=255)

                                                                                cgggc‑ggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGa          <  1:1615914/93‑1 (MQ=255)

                                                                                cgggc‑ggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGa          <  2:3318504/93‑1 (MQ=255)

                                                                                 gggc‑ggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa         <  2:1588234/93‑1 (MQ=255)

                                                                                 gggc‑ggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa         >  1:3361384/1‑93 (MQ=255)

                                                                                  ggc‑ggcGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac        <  1:2267000/93‑1 (MQ=255)

                                                                                  ggc‑ggcGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac        <  2:4815600/93‑1 (MQ=255)

                                                                                  ggc‑ggcGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac        <  2:4580266/93‑1 (MQ=255)

                                                                                   gc‑ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGCTTGTATTGCGTTTGGTGACGGGATGAacg       >  2:4396292/1‑93 (MQ=255)

                                                                                   gc‑ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg       <  2:2466906/93‑1 (MQ=255)

                                                                                   gc‑ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg       <  2:4018872/93‑1 (MQ=255)

                                                                                    c‑ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga      <  1:4477690/93‑1 (MQ=255)

                                                                                    c‑ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga      <  2:4254565/93‑1 (MQ=255)

                                                                                    c‑ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga      <  2:670750/93‑1 (MQ=255)

                                                                                    c‑ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAGGAacga      <  1:5107890/93‑1 (MQ=255)

                                                                                      ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGTGTTTGGTGACGGGAGGAacgac     >  2:2158791/1‑93 (MQ=255)

                                                                                       gcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg    >  1:3018123/1‑93 (MQ=255)

                                                                                       gcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg    >  2:2336717/1‑93 (MQ=255)

                                                                                        cgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc   <  1:4718515/93‑1 (MQ=255)

                                                                                        cgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc   >  2:3055681/1‑93 (MQ=255)

                                                                                         gTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc  <  2:6070951/93‑1 (MQ=255)

GCTGGAGCAGGCGATTAACGCTCGTTGGGGCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGC‑GGCGTTT‑C‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCC  >  NC_000913/4008280‑4008449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`