Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 4,008,400 | +GAAA | coding (483/516 nt) | b4555 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,008,398 | 1 | . | A | 100.0% | 187.5 / NA | 52 | E161K (GAA→AAA) | b4555 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (17/35); total (17/35) | |||||||||||
* | NC_000913 | 4,008,398 | 2 | . | A | 100.0% | 191.2 / NA | 52 | E161K (GAA→AAA) | b4555 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (17/35); total (17/35) | |||||||||||
* | NC_000913 | 4,008,398 | 3 | . | G | 100.0% | 187.5 / NA | 52 | E161? (GAA→NAA) | b4555 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (17/35); total (17/35) | |||||||||||
* | NC_000913 | 4,008,398 | 4 | . | A | 100.0% | 188.0 / NA | 52 | E161K (GAA→AAA) | b4555 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (17/35); total (17/35) |
GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑C‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTG > NC_000913/4008309‑4008458 |||| gCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑a < 2:1055363/93‑1 (MQ=255) gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aag > 2:5666223/1‑92 (MQ=255) gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aag > 1:2245207/1‑92 (MQ=255) gATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAAGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aag > 1:383212/1‑92 (MQ=255) aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTTCC‑AAAGGCCATGCGCTGGGAGCGGTGGCG‑‑‑‑aaga > 2:5218446/1‑91 (MQ=255) aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga < 1:4210164/93‑3 (MQ=255) aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGGTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga > 2:3437448/1‑91 (MQ=255) aTCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGAGATT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aaga > 2:5286486/1‑91 (MQ=255) tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa < 1:2952901/93‑4 (MQ=255) tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa < 2:1335952/93‑4 (MQ=255) tCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCG‑‑‑‑aagaa > 1:6051407/1‑90 (MQ=255) tCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAATGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt < 1:1901182/93‑1 (MQ=255) tCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt > 2:3190494/1‑93 (MQ=255) tCTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtt < 2:2842303/93‑1 (MQ=255) cTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGttt < 1:2334120/93‑2 (MQ=255) cTGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGttt < 1:4465851/93‑2 (MQ=255) tGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg < 1:1737083/93‑3 (MQ=255) tGGAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttg < 1:4989388/93‑3 (MQ=255) gAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt < 2:226086/93‑5 (MQ=255) gAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt < 1:4817457/93‑5 (MQ=255) gAAGTGATGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGtttggt < 2:6069960/93‑5 (MQ=255) tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 2:4924566/93‑1 (MQ=255) tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 1:2302993/93‑1 (MQ=255) tGGCGGGCGGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGa < 2:2950850/93‑1 (MQ=255) ggcgggcgGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 2:2143856/93‑1 (MQ=255) ggcgggcgGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 2:743236/93‑1 (MQ=255) ggcgggcgGCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAt < 1:1022573/93‑1 (MQ=255) ggggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGa < 2:3840682/92‑1 (MQ=255) cgggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGa < 2:3318504/93‑1 (MQ=255) cgggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGa < 1:1615914/93‑1 (MQ=255) gggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa < 2:1588234/93‑1 (MQ=255) gggcggCGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGaa > 1:3361384/1‑93 (MQ=255) ggcggcGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac < 1:2267000/93‑1 (MQ=255) ggcggcGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac < 2:4815600/93‑1 (MQ=255) ggcggcGTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAac < 2:4580266/93‑1 (MQ=255) gcggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGCTTGTATTGCGTTTGGTGACGGGATGAacg > 2:4396292/1‑93 (MQ=255) gcggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg < 2:4018872/93‑1 (MQ=255) gcggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacg < 2:2466906/93‑1 (MQ=255) cggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga < 2:670750/93‑1 (MQ=255) cggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga < 1:4477690/93‑1 (MQ=255) cggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacga < 2:4254565/93‑1 (MQ=255) cggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGAGGAacga < 1:5107890/93‑1 (MQ=255) ggcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGTGTTTGGTGACGGGAGGAacgac > 2:2158791/1‑93 (MQ=255) gcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 2:2336717/1‑93 (MQ=255) gcgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAacgacg > 1:3018123/1‑93 (MQ=255) cgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc > 2:3055681/1‑93 (MQ=255) cgTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGc < 1:4718515/93‑1 (MQ=255) gTTT‑CAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGcc < 2:6070951/93‑1 (MQ=255) tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaa > 2:1177485/4‑93 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa > 2:4662578/3‑93 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa < 1:3624707/91‑1 (MQ=255) caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGaaa < 1:824842/91‑1 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 2:4803706/2‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 2:2985712/2‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt < 1:2804031/92‑1 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 2:4072808/2‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 1:5024781/2‑93 (MQ=255) aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAt > 1:1681157/2‑93 (MQ=255) aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAAtc > 2:4531756/1‑92 (MQ=255) aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATg > 2:662695/1‑93 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt < 2:4274699/93‑1 (MQ=255) aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCt < 2:910103/93‑1 (MQ=255) ggCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGCGTTTGGTGACGGGATGAACGACGCCGAAATGCTg > 2:5616454/1‑93 (MQ=255) |||| GCGATCGCGTCAACGTCAGTTTCTCTACCTTAACCTGTCTGGAAGTGATGGCGGGCGGCGTTT‑C‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGCGTT‑‑GTGACGGGATGAACGACGCCGAAATGCTG > NC_000913/4008309‑4008458 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |