BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	580,773	0	G	A	68.8%	1334.9 / inf	876	S66N (AGC→AAC)	ybcX	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (154/119); new base A (268/335); total (422/454)
Fisher's exact test for biased strand distribution p-value = 1.30e-03
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.93e-03
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 908 total aligned reads displayed.

TGCTAATTACTATCTCCCGAAAGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGGTGTTTATGCCTACTTTATAGAGCATA  >  NC_000913/580681‑580865

 gCTAATTACTATCTCCCGAAAGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGc                                                                                             >  1:690521/1‑93 (MQ=255)

   tAATTACTATCTCCCGAAAGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGa                                                                                           >  1:579045/1‑93 (MQ=255)

    aaTTACTATCTCCCGAAAGAATCCGCATACCAGGAAGGTCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGAc                                                                                          >  2:4142117/1‑93 (MQ=255)

    aaTTACTATCTCCCGAAAGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGAc                                                                                          <  1:4765407/93‑1 (MQ=255)

    aaTTACTATCTCCCGAAAGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGAc                                                                                          >  1:2054614/1‑93 (MQ=255)

    aaTTACTATCTCCCCAAAGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGat                                                                                          >  2:5065855/1‑92 (MQ=255)

      ttACTATCTCCCGAAAGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTa                                                                                        >  1:353632/1‑93 (MQ=255)

        aCTATCTCCCGAAAGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACa                                                                                      <  2:4651354/93‑1 (MQ=255)

        aCTATCTCCCCAAAGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACa                                                                                      <  1:2889576/93‑1 (MQ=255)

        aCTATCTCCCCAAAGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACa                                                                                      <  1:200000/93‑1 (MQ=255)

        aCTAGCTCCCCAAAGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACa                                                                                      <  1:4640742/93‑1 (MQ=255)

         cTATCTCCCGAAAGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACAt                                                                                     <  2:1869450/93‑1 (MQ=255)

          tATCTCCCGAAAGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTAAATc                                                                                    >  1:1204035/1‑93 (MQ=255)

          tATCTCCCCAAAGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACAta                                                                                    <  2:3953757/93‑2 (MQ=255)

          tATCTCCCCAAAGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACAta                                                                                    <  1:1500911/93‑2 (MQ=255)

           aTCTCCCGAAAGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATcc                                                                                   >  1:5720312/1‑93 (MQ=255)

           aTCTCCCCAAAGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACAtac                                                                                   <  1:3261777/93‑3 (MQ=255)

           aTCTCCCCAAAGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACAtac                                                                                   <  2:3473723/93‑3 (MQ=255)

            tctcCCGAAAGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCGTGAATGCGATGGGCAGCGACTACATCCg                                                                                  <  2:3713899/93‑1 (MQ=255)

            tctcCCCAAAGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACg                                                                                  <  2:5840806/93‑1 (MQ=255)

            tctcCCCAAAGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACg                                                                                  >  1:6098451/1‑93 (MQ=255)

              tcCCGAAAGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTg                                                                                <  2:2515862/93‑1 (MQ=255)

                 ccaaaGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAgg                                                                             <  1:3062482/91‑1 (MQ=255)

                  caaaGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGt                                                                            >  1:2958562/2‑93 (MQ=255)

                   aaaGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTg                                                                           >  2:1523343/1‑93 (MQ=255)

                    aaGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGtca                                                                          <  2:3863122/93‑3 (MQ=255)

                    aaGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGtca                                                                          >  2:4244326/1‑91 (MQ=255)

                    aaGAGTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGGAAAGATTACATACGTGAggcca                                                                          >  1:1566345/1‑90 (MQ=255)

                    aaGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGa                                                                          >  1:2218181/1‑93 (MQ=255)

                    aaGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGa                                                                          >  1:5284896/1‑93 (MQ=255)

                     agagTCGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCaa                                                                         <  2:4474320/93‑1 (MQ=255)

                          ccGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATgtgg                                                                    <  2:4860547/93‑1 (MQ=255)

                           ggcctACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACgttgt                                                                   >  1:858724/5‑93 (MQ=255)

                             cATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGa                                                                 >  1:5388809/1‑93 (MQ=255)

                              aTACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGaa                                                                <  1:5532725/93‑1 (MQ=255)

                               tACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAg                                                               >  2:3080921/1‑93 (MQ=255)

                                 ccAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTc                                                             >  2:3217597/1‑93 (MQ=255)

                                  cAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCt                                                            >  2:1821603/1‑93 (MQ=255)

                                   aGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTg                                                           <  2:2871127/93‑1 (MQ=255)

                                    ggAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGc                                                          >  1:4885467/1‑93 (MQ=255)

                                    ggAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGc                                                          <  2:3024449/93‑1 (MQ=255)

                                    ggAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGc                                                          >  1:3755142/1‑93 (MQ=255)

                                     gAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGcc                                                         >  2:6131997/1‑93 (MQ=255)

                                      aaGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGccc                                                        >  1:49985/1‑93 (MQ=255)

                                      aaGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGccc                                                        <  2:4370447/93‑1 (MQ=255)

                                      aaGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGccc                                                        >  1:4440769/1‑93 (MQ=255)

                                       aGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCg                                                       <  2:5696297/93‑1 (MQ=255)

                                          gcgcTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCgtgt                                                    <  2:915693/93‑1 (MQ=255)

                                           cgcTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCgtgtt                                                   <  1:397569/93‑2 (MQ=255)

                                            gcTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCgtgttg                                                  <  1:749350/93‑3 (MQ=255)

                                             cTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTgg                                                 <  2:1273341/93‑1 (MQ=255)

                                             cTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTgg                                                 >  1:1384964/1‑93 (MQ=255)

                                              tGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTggc                                                <  1:1081075/93‑2 (MQ=255)

                                                ggAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTa                                              <  1:2788288/93‑1 (MQ=255)

                                                ggAAACACTGCCCTTGCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTa                                              <  2:535109/93‑1 (MQ=255)

                                                 gAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTAt                                             >  1:4208089/1‑93 (MQ=255)

                                                  aaaCACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTAtt                                            >  2:1366912/1‑93 (MQ=255)

                                                     cacTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCa                                         <  2:2022268/93‑1 (MQ=255)

                                                        tGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAaaaa                                      <  2:5177684/93‑1 (MQ=255)

                                                        tGCCGTTTCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAaaaa                                      >  2:3778797/1‑93 (MQ=255)

                                                        tGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCaaaa                                      <  2:5434929/93‑1 (MQ=255)

                                                        ctcccGTTCAGCGGGCCGTCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCaaaa                                      <  1:4119087/91‑1 (MQ=255)

                                                          cccTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAAtg                                    >  2:2732495/1‑93 (MQ=255)

                                                           ccTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGGCCGTGTCGGTTATTCCAAAAtgc                                   >  2:2430490/1‑93 (MQ=255)

                                                           ccTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAAtgc                                   <  2:1138984/93‑1 (MQ=255)

                                                             tttCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAAtgttg                                 >  1:942106/1‑93 (MQ=255)

                                                             tttCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTGAAGTCTGCCCGTGTTGGCTATTCAAAAAtgttg                                 >  2:5935055/1‑93 (MQ=255)

                                                              ttCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAAtgctgc                                <  2:4971624/93‑1 (MQ=255)

                                                               tCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATgttgct                               <  1:4519709/93‑1 (MQ=255)

                                                               tCAACGCGCGATCATGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATgttgct                               <  1:1710890/93‑1 (MQ=255)

                                                                 aGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTgg                             <  1:3999746/93‑1 (MQ=255)

                                                                  gCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTggg                            <  1:5213052/93‑1 (MQ=255)

                                                                      gcgatcatGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGtt                        >  1:4276434/4‑93 (MQ=255)

                                                                       cgatcatGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGttt                       >  2:5241322/3‑93 (MQ=255)

                                                                        gatcatGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTa                      <  2:748022/92‑1 (MQ=255)

                                                                        gatcatGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTa                      <  1:2320615/92‑1 (MQ=255)

                                                                        gatcatGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTa                      <  1:3183778/92‑1 (MQ=255)

                                                                        gatcatGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTa                      <  2:4711819/92‑1 (MQ=255)

                                                                        catcatGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGGTGTTTa                      <  2:786821/93‑1 (MQ=255)

                                                                        catcatGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGCTGTTTa                      <  1:2639663/93‑1 (MQ=255)

                                                                         atcatGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAATAATGTTGCTGGGTGTTTAt                     >  2:5985516/1‑93 (MQ=255)

                                                                         atcatGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTAt                     >  1:2424152/1‑93 (MQ=255)

                                                                         atcatGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTAt                     >  1:272634/1‑93 (MQ=255)

                                                                         atcatGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGGTGTTTAt                     <  1:3860009/93‑1 (MQ=255)

                                                                          tcatGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTATg                    >  2:163123/1‑93 (MQ=255)

                                                                           catGAATGCGATGGTTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTATGc                   <  1:5091235/93‑1 (MQ=255)

                                                                           catGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTATGc                   <  1:3329228/93‑1 (MQ=255)

                                                                           catGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGGTGTTTATGc                   >  2:2208126/1‑93 (MQ=255)

                                                                             tGAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTATGcgt                 >  2:405565/1‑91 (MQ=255)

                                                                              gAATGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTATGCGTa                <  1:1845718/93‑1 (MQ=255)

                                                                               aaTGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTATGCGTat               >  1:5966836/1‑92 (MQ=255)

                                                                               aaTGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTATGCGTat               <  2:3580957/93‑2 (MQ=255)

                                                                               aaTGCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTATGCGTat               >  1:5878904/1‑92 (MQ=255)

                                                                                  gCGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTATGCGTAtttt            <  2:1931423/93‑1 (MQ=255)

                                                                                   cGATGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTATGCGTATTTta           <  2:5610919/93‑1 (MQ=255)

                                                                                     aTGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTATGCGTATTTtatt         <  2:5537890/93‑2 (MQ=255)

                                                                                     aTGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTATGCGTATTTtatt         <  2:265698/93‑2 (MQ=255)

                                                                                      tGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAAAAATGTTGCTGGGTGTTTATGCGTATTTtatta        >  2:1695851/1‑91 (MQ=255)

                                                                                          cAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGGTGTTTATGCCTACTTTATAGAGCa    <  2:3334186/93‑1 (MQ=255)

                                                                                            gCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGGTGTTTATGCCTACTTTATAGAGCATa  >  1:2545486/1‑93 (MQ=255)

TGCTAATTACTATCTCCCGAAAGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGGTGTTTATGCCTACTTTATAGAGCATA  >  NC_000913/580681‑580865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`