Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 34,711 A→G intergenic (+16/+70) caiF → / ← caiE transcriptional regulator of cai operon/CaiE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00091334,7110AG96.7% 814.8 / 9.8 239intergenic (+16/+70)caiF/caiEtranscriptional regulator of cai operon/CaiE
Reads supporting (aligned to +/- strand):  ref base A (5/3);  new base G (123/108);  total (128/111)
Fisher's exact test for biased strand distribution p-value = 7.28e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01

Only 100 of 243 total aligned reads displayed.

CCTGCCGTTCCGCTCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATACCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCACCGTTTAGGCGTCACAT  >  NC_000913/34621‑34800
                                                                                          |                                                                                         
 cTGCCGTTCCGCTCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGTGTCGTTAATTTTATCTCGTTGATGCCg                                                                                        <  2:4427885/93‑1 (MQ=255)
 cTGCCGTTCCGCTCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCg                                                                                        <  2:5976656/93‑1 (MQ=255)
  tGCCGTTCCGCTCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCgg                                                                                       >  1:641789/1‑93 (MQ=255)
  tGCCGTTCCGCTCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCgg                                                                                       <  2:1222132/93‑1 (MQ=255)
   gCCGTTCCGCTCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCggg                                                                                      >  1:561511/1‑93 (MQ=255)
   gCCGTTCCGCTCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCggg                                                                                      <  2:5269883/93‑1 (MQ=255)
    ccGTTCCGCTCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGc                                                                                     <  2:3499037/93‑1 (MQ=255)
     cGTTCCGCTCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCg                                                                                    >  2:1253479/1‑93 (MQ=255)
      gTTCCGCTCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGt                                                                                   >  2:5733316/1‑93 (MQ=255)
      gTTCCGCTCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGt                                                                                   >  2:4264692/1‑93 (MQ=255)
       ttCCGCTCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTc                                                                                  >  1:1684261/1‑93 (MQ=255)
            cTCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATGTCGTTGATGCCGGGCGTCCTGCt                                                                             <  1:2620479/93‑1 (MQ=255)
            cTCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCt                                                                             <  1:84801/93‑1 (MQ=255)
             tCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCtt                                                                            >  2:1383910/1‑93 (MQ=255)
              cACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTg                                                                           >  2:1072/1‑93 (MQ=255)
               aCGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGc                                                                          >  1:3099147/1‑93 (MQ=255)
                 ggAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCa                                                                        >  2:437706/1‑93 (MQ=255)
                 ggAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCa                                                                        <  1:4840477/93‑1 (MQ=255)
                  gAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAg                                                                       >  2:4011599/1‑93 (MQ=255)
                   aaCTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGa                                                                      <  2:3471757/93‑1 (MQ=255)
                   aaCTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGa                                                                      >  2:6147988/1‑93 (MQ=255)
                   aaCTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGa                                                                      <  1:1275611/93‑1 (MQ=255)
                   aaCTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGa                                                                      <  1:1009732/93‑1 (MQ=255)
                    aCTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGAt                                                                     <  2:4880397/93‑1 (MQ=255)
                     cTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATg                                                                    <  2:903766/93‑1 (MQ=255)
                     cTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATg                                                                    <  1:1728184/93‑1 (MQ=255)
                      ttAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGc                                                                   >  2:2318403/1‑93 (MQ=255)
                      ttAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGc                                                                   <  1:6072369/93‑1 (MQ=255)
                        aaCCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGa                                                                 <  1:1894042/93‑1 (MQ=255)
                        aaCCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGa                                                                 <  1:521641/93‑1 (MQ=255)
                          ccGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGAtg                                                               <  2:4975073/93‑1 (MQ=255)
                          acgcgAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGAtg                                                               <  2:2666635/92‑1 (MQ=255)
                           cgcgAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGAtgt                                                              <  2:2486167/93‑1 (MQ=255)
                           cgcgAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGAtgt                                                              >  2:4085769/1‑93 (MQ=255)
                           cgcgAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATACCGGGCGTCCTGCTTGCCAGATGCGAtgt                                                              <  1:2011850/93‑1 (MQ=255)
                            gcgAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGAtgtt                                                             <  1:3373596/93‑1 (MQ=255)
                            gcgAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGAtgtt                                                             >  2:155674/1‑93 (MQ=255)
                             cgAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGAtgttg                                                            <  1:2819031/93‑1 (MQ=255)
                             cgAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGAtgttg                                                            <  2:1494451/93‑1 (MQ=255)
                              gAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGAtgttgt                                                           >  1:5947674/1‑93 (MQ=255)
                                   gAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCCGATGCGATGTTGTAGCAt                                                      >  2:2986463/1‑93 (MQ=255)
                                   gAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCAt                                                      >  2:4068541/1‑93 (MQ=255)
                                     aGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCt                                                    >  1:2368187/1‑93 (MQ=255)
                                       tGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTa                                                  <  2:3413196/93‑1 (MQ=255)
                                       tGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTa                                                  <  1:4942083/93‑1 (MQ=255)
                                       tGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTa                                                  <  2:1033768/93‑1 (MQ=255)
                                        ggCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTAt                                                 <  2:2965729/93‑1 (MQ=255)
                                         gCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATc                                                >  1:1074663/1‑93 (MQ=255)
                                         gCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATc                                                >  2:5038289/1‑93 (MQ=255)
                                           agagGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCa                                              <  2:1706245/93‑1 (MQ=255)
                                           aGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCa                                              <  1:3567164/93‑1 (MQ=255)
                                             atgatgTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGc                                            <  1:2710793/93‑1 (MQ=255)
                                             atgatgTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGc                                            <  1:2158003/93‑1 (MQ=255)
                                             atgatgTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGc                                            >  2:2262561/1‑93 (MQ=255)
                                             atgatgTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGc                                            <  1:5060949/93‑1 (MQ=255)
                                              tgatgTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCa                                           <  1:2590043/93‑1 (MQ=255)
                                               gatgTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCaa                                          <  2:1320981/93‑1 (MQ=255)
                                               gatgTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCaa                                          >  1:2765287/1‑93 (MQ=255)
                                                atgTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGAGGCCGGGCGGCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAAc                                         <  2:1993491/93‑1 (MQ=255)
                                                 tgttgtCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAAcc                                        <  2:5962173/93‑1 (MQ=255)
                                                 tgttgtCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAAcc                                        >  2:5412548/1‑93 (MQ=255)
                                                  gttgtCAAAGAGTATGCGTCGTTAATTTTATCTCGTTTATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCa                                       <  1:5577895/93‑1 (MQ=255)
                                                   ttgtCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAg                                      <  1:3504998/93‑1 (MQ=255)
                                                    tgtCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAgg                                     <  2:285256/93‑1 (MQ=255)
                                                      tCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTc                                   >  1:3828970/1‑93 (MQ=255)
                                                      tCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTc                                   >  2:768159/1‑93 (MQ=255)
                                                      tCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTc                                   >  1:910443/1‑93 (MQ=255)
                                                       cAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCg                                  >  1:3843737/1‑93 (MQ=255)
                                                        aaaGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCga                                 >  2:1437202/1‑92 (MQ=255)
                                                        aaaGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGc                                 >  2:2622329/1‑93 (MQ=255)
                                                        aaaGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGc                                 >  1:4242914/1‑93 (MQ=255)
                                                         aaGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCa                                >  2:3184313/1‑93 (MQ=255)
                                                         aaGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCa                                <  1:5714636/93‑1 (MQ=255)
                                                         aaGAGTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCa                                >  1:3990553/1‑93 (MQ=255)
                                                          agagTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCACAt                               <  2:129750/93‑1 (MQ=255)
                                                             gTATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCg                            >  2:5561215/1‑93 (MQ=255)
                                                              tATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCgg                           >  2:2541883/1‑93 (MQ=255)
                                                              tATGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCgg                           >  2:3618916/1‑93 (MQ=255)
                                                               aTGCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGc                          >  1:4615600/1‑93 (MQ=255)
                                                                 gCGTCGTTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCaa                        >  1:1466997/1‑93 (MQ=255)
                                                                    tcgtTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGAt                     >  2:2831693/1‑93 (MQ=255)
                                                                     cgtTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATc                    >  2:5190245/1‑93 (MQ=255)
                                                                      gtTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCa                   <  2:2234425/93‑1 (MQ=255)
                                                                      gtTAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCa                   >  2:4570225/1‑93 (MQ=255)
                                                                      gtTAATTTTATCTCGTTGATGCCGGGCGTCCTGATTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGCTCa                   >  1:4366044/1‑93 (MQ=255)
                                                                       ttAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCAc                  >  1:464215/1‑93 (MQ=255)
                                                                        tAATTTTATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCAcc                 >  1:3024585/1‑93 (MQ=255)
                                                                           ttttATCTCGTTGATGCCGGGCGTCCTGCTTTCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCACCGtt              >  1:3462969/1‑93 (MQ=255)
                                                                           ttttATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCACCGtt              >  2:1143758/1‑93 (MQ=255)
                                                                              tATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCACCGTTTAg           >  1:2463971/1‑93 (MQ=255)
                                                                              tATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCACCGTTTAg           >  1:3308736/1‑93 (MQ=255)
                                                                              tATCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCACCGTTTAg           >  1:1398933/1‑93 (MQ=255)
                                                                               aTCTCGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCACCGTTTAgg          <  1:329009/93‑1 (MQ=255)
                                                                                tctcGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCACCGTTTAGGc         >  1:5333954/1‑93 (MQ=255)
                                                                                   cGTTGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTCGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCACCGTTTAGGCGTc      >  1:626155/1‑93 (MQ=255)
                                                                                     ttGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCACCGTTTAGGCGTcac    >  2:2052847/1‑93 (MQ=255)
                                                                                     ttGATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCACCGTTTAGGCGTcac    <  2:65428/93‑1 (MQ=255)
                                                                                       gATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCACCGTTTAGGCGTCACAt  >  2:5105502/1‑93 (MQ=255)
                                                                                       gATGCCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCACCGTTTAGGCGTCACAt  <  1:3724621/93‑1 (MQ=255)
                                                                                       gATACCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCACCGTTTAGGCGTCACAt  >  2:5006327/1‑93 (MQ=255)
                                                                                          |                                                                                         
CCTGCCGTTCCGCTCACGGAACTTAACCGCGAGCAGAAGTGGCAGATGATGTTGTCAAAGAGTATGCGTCGTTAATTTTATCTCGTTGATACCGGGCGTCCTGCTTGCCAGATGCGATGTTGTAGCATCTTATCCAGCAACCAGGTCGCATCCGGCAAGATCACCGTTTAGGCGTCACAT  >  NC_000913/34621‑34800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: