Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,251,414 G→A A379T (GCA→ACA)  b1201 → putative sensor‑type regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,251,4140GA98.8% 589.5 / ‑2.9 161A379T (GCA→ACA) b1201putative sensor‑type regulator
Reads supporting (aligned to +/- strand):  ref base G (2/0);  new base A (80/78);  total (82/79)
Fisher's exact test for biased strand distribution p-value = 4.97e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.30e-01

Only 100 of 168 total aligned reads displayed.

CGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTGCAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGAA  >  NC_000913/1251324‑1251503
                                                                                          |                                                                                         
  cAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAgg                                                                                       <  1:3356878/93‑1 (MQ=255)
  cAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAgg                                                                                       >  1:1831270/1‑93 (MQ=255)
   aGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGt                                                                                      >  1:2610237/1‑93 (MQ=255)
    gTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTGCAGGTc                                                                                     >  2:2192515/1‑93 (MQ=255)
     tAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTcc                                                                                    >  2:3380455/1‑93 (MQ=255)
      aGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCt                                                                                   >  2:34419/1‑93 (MQ=255)
       gCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCtt                                                                                  >  1:5866/1‑93 (MQ=255)
       gCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCtt                                                                                  <  2:4002797/93‑1 (MQ=255)
       gCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCtt                                                                                  <  2:4779777/93‑1 (MQ=255)
         tttCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTtat                                                                                <  2:1104704/93‑1 (MQ=255)
          ttCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTtata                                                                               >  1:1258830/1‑93 (MQ=255)
           tcctgtcctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTatat                                                                              >  1:646845/1‑93 (MQ=255)
            cctgtcctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATc                                                                             <  2:5120700/93‑1 (MQ=255)
             ctgtcctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCg                                                                            >  1:1436011/1‑93 (MQ=255)
              tgtcctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGc                                                                           >  1:5319704/1‑93 (MQ=255)
               gtcctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGcc                                                                          >  2:2065092/1‑93 (MQ=255)
                  ctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTc                                                                       >  1:866764/1‑93 (MQ=255)
                  ctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTc                                                                       >  1:4149628/1‑93 (MQ=255)
                  ctgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTc                                                                       <  1:284105/93‑1 (MQ=255)
                   tgCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCa                                                                      >  2:786957/1‑93 (MQ=255)
                    gCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCaa                                                                     >  2:5859151/1‑93 (MQ=255)
                     cTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGTAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAAt                                                                    <  1:5357635/93‑1 (MQ=255)
                     cTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAAt                                                                    >  2:2004538/1‑93 (MQ=255)
                      tttGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAAtt                                                                   >  1:3231815/1‑93 (MQ=255)
                      tttGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAAtt                                                                   <  2:3920125/93‑1 (MQ=255)
                       ttGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATtg                                                                  >  1:2528673/1‑93 (MQ=255)
                       ttGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATtg                                                                  <  2:1946148/93‑1 (MQ=255)
                           ggAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAg                                                              >  2:3121085/1‑93 (MQ=255)
                           ggAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAg                                                              <  2:451510/93‑1 (MQ=255)
                             agaagaGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGtt                                                            >  2:2683645/1‑93 (MQ=255)
                                agagGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTtata                                                         >  1:1918408/1‑93 (MQ=255)
                                agagGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTtata                                                         <  1:5947534/93‑1 (MQ=255)
                                 gagGGCGTGGGCAAGGCGCTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTatat                                                        <  1:911155/93‑1 (MQ=255)
                                 gagGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTatat                                                        <  1:4660242/93‑1 (MQ=255)
                                 gagGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTatat                                                        <  1:1912005/93‑1 (MQ=255)
                                  agGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATg                                                       >  2:5772182/1‑93 (MQ=255)
                                    ggCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGt                                                     <  2:4768067/93‑1 (MQ=255)
                                     gCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTg                                                    >  2:5252955/1‑93 (MQ=255)
                                      cGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGa                                                   <  2:3802752/93‑1 (MQ=255)
                                       gTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGAt                                                  <  2:4880155/93‑1 (MQ=255)
                                        tGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGAtg                                                 <  2:679742/93‑1 (MQ=255)
                                         gggCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGAtgc                                                <  2:5309047/93‑1 (MQ=255)
                                         gggCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGAtgc                                                <  1:104826/93‑1 (MQ=255)
                                           gCAAGGCACTGCTAAGTCAGGCAATACATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGAtgctg                                              <  2:2900711/93‑1 (MQ=255)
                                            cAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGAtgctgc                                             <  1:5723149/93‑1 (MQ=255)
                                            cAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGAtgctgc                                             <  1:2005889/93‑1 (MQ=255)
                                            cAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGAtgctgc                                             <  2:3097091/93‑1 (MQ=255)
                                            cAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGAtgctgc                                             <  2:3031579/93‑1 (MQ=255)
                                              aGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTgcgc                                           <  1:5370770/93‑1 (MQ=255)
                                               ggCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCt                                          <  2:3773927/93‑1 (MQ=255)
                                               ggCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCt                                          <  2:3773926/93‑1 (MQ=255)
                                               ggCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCt                                          <  2:5241979/93‑1 (MQ=255)
                                               ggCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCt                                          <  2:5933193/93‑1 (MQ=255)
                                                gCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTg                                         >  1:2242020/1‑93 (MQ=255)
                                                gCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTg                                         <  1:4023734/93‑1 (MQ=255)
                                                 cACTGCTAAGTCAGGCAATTCATCATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTgg                                        <  1:3480357/93‑1 (MQ=255)
                                                 cACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTgg                                        <  2:235619/93‑1 (MQ=255)
                                                  aCTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGc                                       >  1:5784353/1‑93 (MQ=255)
                                                   cTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCg                                      >  1:2438771/1‑93 (MQ=255)
                                                     gCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGga                                    >  1:390779/1‑93 (MQ=255)
                                                       tAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGgaag                                  <  2:5027696/93‑1 (MQ=255)
                                                       tAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGgaag                                  >  1:5990158/1‑93 (MQ=255)
                                                       tAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGgaag                                  >  1:5535269/1‑93 (MQ=255)
                                                        aaGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGgaaga                                 <  1:4601040/93‑1 (MQ=255)
                                                         aGTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGgaagaa                                <  2:5692577/93‑1 (MQ=255)
                                                          gTCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAAt                               >  2:1107652/1‑93 (MQ=255)
                                                           tCAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAAtt                              <  2:1460981/93‑1 (MQ=255)
                                                            cAGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAAttt                             >  2:333658/1‑93 (MQ=255)
                                                             aGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTa                            >  1:2146460/1‑93 (MQ=255)
                                                             aGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTa                            <  1:1340582/93‑1 (MQ=255)
                                                             aGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTa                            >  1:4969929/1‑93 (MQ=255)
                                                             aGGCAATTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGGTATATGGTGATGCTGCGCTGGCGGAAGAATTTa                            >  2:5120504/1‑93 (MQ=255)
                                                                 aaTTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATtgg                        <  2:4073108/93‑1 (MQ=255)
                                                                 aaTTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATtgg                        <  2:1188623/93‑1 (MQ=255)
                                                                  aTTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATtggt                       >  1:3222543/1‑93 (MQ=255)
                                                                  aTTCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATtggt                       <  2:6043221/93‑1 (MQ=255)
                                                                   ttCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATtggtg                      >  1:4010035/1‑93 (MQ=255)
                                                                    tCATAATGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATtggtgg                     <  2:1806709/93‑1 (MQ=255)
                                                                        aaTGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGAt                 <  1:275588/93‑1 (MQ=255)
                                                                        aaTGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGAt                 >  2:5280823/1‑93 (MQ=255)
                                                                        aaTGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGAt                 >  2:4559887/1‑93 (MQ=255)
                                                                        aaTGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGAt                 >  1:3639471/1‑93 (MQ=255)
                                                                         aTGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATc                <  2:3220676/93‑1 (MQ=255)
                                                                          tGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCg               >  2:1301546/1‑93 (MQ=255)
                                                                          tGAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCg               >  2:2183330/1‑93 (MQ=255)
                                                                           gAAAGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGc              <  2:1062343/93‑1 (MQ=255)
                                                                            gacgcgagcgTGCTCCAGGACCTTGTCTCGCCGTCTATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGAGGCGCTCGcc             <  2:5492905/90‑2 (MQ=255)
                                                                             aaGCGAGCGTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCAc            >  2:6129841/1‑93 (MQ=255)
                                                                               gcgagcgTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACgg          >  1:4500839/1‑93 (MQ=255)
                                                                               gcgagcgTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACgg          <  2:2965929/93‑1 (MQ=255)
                                                                               gcgagcgTGCTACAGGTCCTTATATCGCCGTCAACTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACgg          >  1:3972623/1‑93 (MQ=255)
                                                                                 gagcgTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGAc        >  1:2517206/1‑93 (MQ=255)
                                                                                 gagcgTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGAc        >  2:5473288/1‑93 (MQ=255)
                                                                                   gcgTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACaa      >  2:1421288/1‑93 (MQ=255)
                                                                                   gcgTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACaa      <  2:4678468/93‑1 (MQ=255)
                                                                                   gcgTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACaa      >  2:2693108/1‑93 (MQ=255)
                                                                                    cgTGCTACAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAAt     >  2:2726678/1‑93 (MQ=255)
                                                                                      tgctacAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGa   <  1:3038146/93‑1 (MQ=255)
                                                                                       gctacAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGaa  <  1:4996593/93‑1 (MQ=255)
                                                                                       gctacAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGaa  >  1:1166235/1‑93 (MQ=255)
                                                                                          |                                                                                         
CGCAGTAGCTTTCCTGTCCTGCTTTGTGGAGAAGAGGGCGTGGGCAAGGCACTGCTAAGTCAGGCAATTCATAATGAAAGCGAGCGTGCTGCAGGTCCTTATATCGCCGTCAATTGTGAGTTATATGGTGATGCTGCGCTGGCGGAAGAATTTATTGGTGGCGATCGCACGGACAATGAA  >  NC_000913/1251324‑1251503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑