BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,447,942	C→T	V478I (GTC→ATC)	tynA ←	copper amine oxidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,447,942	0	C	T	99.1%	820.9 / ‑3.7	219	V478I (GTC→ATC)	tynA	copper amine oxidase
Reads supporting (aligned to +/- strand): ref base C (2/0); new base T (113/104); total (115/104)
Fisher's exact test for biased strand distribution p-value = 4.99e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

Only 100 of 226 total aligned reads displayed.

CGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGC  >  NC_000913/1447852‑1448031

cGTTTGCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGt                                                                                         <  2:6093451/93‑1 (MQ=255)

  ttttCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTg                                                                                       >  1:3159395/1‑93 (MQ=255)

    ttCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTggg                                                                                     >  2:2591382/1‑93 (MQ=255)

     tCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGc                                                                                    <  1:3562830/93‑1 (MQ=255)

      cATGGAAGATCCAGTCATAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCt                                                                                   <  2:5474057/93‑1 (MQ=255)

       aTGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTg                                                                                  >  1:3525793/1‑93 (MQ=255)

        tGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTgg                                                                                 <  1:3967362/93‑1 (MQ=255)

            aGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCa                                                                             >  2:891727/1‑93 (MQ=255)

            aGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCa                                                                             <  2:5566093/93‑1 (MQ=255)

             gATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCAt                                                                            <  1:967710/93‑1 (MQ=255)

             gATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCAt                                                                            <  2:1119107/93‑1 (MQ=255)

              aTCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCAtt                                                                           >  1:4998851/1‑93 (MQ=255)

                   gTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTg                                                                      >  2:743296/1‑93 (MQ=255)

                   gTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTg                                                                      <  1:1281678/93‑1 (MQ=255)

                   gTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTg                                                                      >  1:1945411/1‑93 (MQ=255)

                    taaaaaaTGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGa                                                                     <  1:1276753/91‑1 (MQ=255)

                    tCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGa                                                                     <  2:4599530/93‑1 (MQ=255)

                    tCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGa                                                                     <  1:1660082/93‑1 (MQ=255)

                    tCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGa                                                                     >  1:919477/1‑93 (MQ=255)

                    tCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGa                                                                     <  1:4847792/93‑1 (MQ=255)

                     cAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGAt                                                                    >  1:2328553/1‑93 (MQ=255)

                      aaaaaTGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATg                                                                   >  1:2591098/1‑93 (MQ=255)

                        aaaTGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCt                                                                 >  1:5651705/1‑93 (MQ=255)

                         aaTGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCtt                                                                >  2:410350/1‑93 (MQ=255)

                         aaTGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCtt                                                                >  2:2120163/1‑93 (MQ=255)

                         aaTGTAGTCATAGTTACCAACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCtt                                                                >  1:4049265/1‑93 (MQ=255)

                          aTGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTta                                                               <  1:2309030/93‑1 (MQ=255)

                           tGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTtat                                                              >  2:4684403/1‑93 (MQ=255)

                           tGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTtat                                                              <  1:5403759/93‑1 (MQ=255)

                            ttAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTtata                                                             <  2:443888/92‑1 (MQ=255)

                            gTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTtata                                                             <  1:5898786/93‑1 (MQ=255)

                               gTCATAGTTACCCACTGTACTGGTCCAGGGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTc                                                          <  2:2278176/93‑1 (MQ=255)

                                tCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTcc                                                         <  1:3215650/93‑1 (MQ=255)

                                 cATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTccg                                                        <  2:3445429/93‑1 (MQ=255)

                                  aTAGTTACCCCCTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTccgg                                                       <  2:485682/93‑1 (MQ=255)

                                  aTAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTccgg                                                       >  1:875402/1‑93 (MQ=255)

                                   tAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGACCATTTCCTGATGCTTATACTccggc                                                      >  1:1121516/1‑93 (MQ=255)

                                     gTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTccggccc                                                    >  1:4579465/1‑93 (MQ=255)

                                     gTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTccggccc                                                    <  2:411850/93‑1 (MQ=255)

                                         cccACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCa                                                >  2:2028308/1‑93 (MQ=255)

                                         cccACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCa                                                >  2:2375041/1‑93 (MQ=255)

                                         cccACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCa                                                >  1:1685771/1‑93 (MQ=255)

                                          ccACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCAt                                               <  2:298432/93‑1 (MQ=255)

                                          ccACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGCCCCGGCAt                                               >  1:4214874/1‑93 (MQ=255)

                                           cACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATa                                              >  1:3665355/1‑93 (MQ=255)

                                           cACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATa                                              >  2:2441970/1‑93 (MQ=255)

                                             cTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAAc                                            >  2:3667336/1‑93 (MQ=255)

                                             cTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAAc                                            >  2:818349/1‑93 (MQ=255)

                                             cTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAAc                                            <  2:1246051/93‑1 (MQ=255)

                                             cTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACCGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAAc                                            >  2:1650265/1‑93 (MQ=255)

                                              tGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATCACg                                           >  2:452161/1‑93 (MQ=255)

                                              tGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACg                                           >  2:3426040/1‑93 (MQ=255)

                                               gTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGt                                          <  2:4161492/93‑1 (MQ=255)

                                               gTACTGATCCAGCGCACCACTAACTCCCGGCGGTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGG‑CCGGCCTAACGtt                                         >  1:4716898/1‑93 (MQ=255)

                                                tACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGtt                                         >  1:3990324/1‑93 (MQ=255)

                                                 aCTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTc                                        >  2:3991779/1‑93 (MQ=255)

                                                  cTGATCCCGCGCACCCCTAACTCCCGGCGTTCGGTACTTATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCa                                       <  2:1947613/93‑1 (MQ=255)

                                                  cTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCa                                       <  2:4787221/93‑1 (MQ=255)

                                                    gATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCaaa                                     <  2:1358226/93‑1 (MQ=255)

                                                     aTCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAAt                                    >  1:4417838/1‑93 (MQ=255)

                                                     aTCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAAt                                    >  1:4883463/1‑93 (MQ=255)

                                                     aTCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAAt                                    >  1:5697813/1‑93 (MQ=255)

                                                       ccAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATAc                                  >  1:3386752/1‑93 (MQ=255)

                                                       ccAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATAc                                  <  2:2908626/93‑1 (MQ=255)

                                                        cAGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATAcc                                 <  2:6057145/93‑1 (MQ=255)

                                                        cAGCCCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATAcc                                 <  1:5308387/93‑1 (MQ=255)

                                                         aGCGCACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACcg                                <  1:2422586/93‑1 (MQ=255)

                                                          gcgcACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACcgc                               >  1:1834272/1‑93 (MQ=255)

                                                          gcgcACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACcgc                               >  2:2724274/1‑93 (MQ=255)

                                                            gcACCACTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGa                             <  1:5551766/93‑1 (MQ=255)

                                                            gcACCACTAACACCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATACCGTTCACCTTCCGCGa                             <  1:5497788/93‑1 (MQ=255)

                                                             caccacTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGAt                            >  1:2078684/1‑93 (MQ=255)

                                                                cacTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAgc                         >  1:2001536/1‑93 (MQ=255)

                                                                cacTAACTCCCCGCGTTCGGTACTTATGTTGGGCTGGCCCATGTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAgc                         <  2:5333997/93‑1 (MQ=255)

                                                                  cTAACTCCCGGCGTTCGGTACTTATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAgcgc                       <  1:5124697/93‑1 (MQ=255)

                                                                  cTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAgcgc                       <  1:6141642/93‑1 (MQ=255)

                                                                  cTAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAgcgc                       >  1:3746206/1‑93 (MQ=255)

                                                                  cTAACTCCCGGCGTTCGGTACGGATGTTGGGCTGGCCCAGTTCCTGATGCTTATGCTCCGGCCCGGCATAACGTTCAAATACCGCGATAgcgc                       <  1:2013074/93‑1 (MQ=255)

                                                                   tAACTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATGTCCTGATGCTTATACTCAGGCCCGGCATAACGTTCAAATACCGCGATAGcgcg                      >  1:905051/1‑93 (MQ=255)

                                                                    aaCTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGa                     >  2:2924302/1‑93 (MQ=255)

                                                                     aCTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAg                    >  2:4143787/1‑93 (MQ=255)

                                                                     aCTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAg                    >  1:6044105/1‑93 (MQ=255)

                                                                      cTCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAgg                   <  1:4651508/93‑1 (MQ=255)

                                                                       tCCCGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAggg                  <  2:5767481/93‑1 (MQ=255)

                                                                       ccccGGCGTTCCGGACTGATGTTGGCCTCTCCCATTCCCGGATACTTATCCTCCGGCCCGGCATAACGTGCAAATACCGCGATAGCGCGAggg                  <  2:101594/92‑1 (MQ=255)

                                                                        cccGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGa                 <  2:5259948/93‑1 (MQ=255)

                                                                        cccGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGa                 >  2:5980742/1‑93 (MQ=255)

                                                                         ccGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGAt                >  1:5205953/1‑93 (MQ=255)

                                                                         ccGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGAt                >  1:1506040/1‑93 (MQ=255)

                                                                          cGGCGTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGAtc               <  2:2097229/93‑1 (MQ=255)

                                                                              gTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCa           <  2:3911458/93‑1 (MQ=255)

                                                                              gTTCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCa           >  1:2446768/1‑93 (MQ=255)

                                                                               ttCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCAt          <  2:4971389/93‑1 (MQ=255)

                                                                               ttCGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCAt          >  2:1750493/1‑93 (MQ=255)

                                                                                 cGGTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCg        <  1:5947355/93‑1 (MQ=255)

                                                                                   gTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGc      >  2:1509928/1‑93 (MQ=255)

                                                                                   gTACTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGc      >  1:1378138/1‑93 (MQ=255)

                                                                                     aCTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAACTACCGCGATAGCGCGAGGGATCTCCATCGGCAc    >  2:5937713/1‑93 (MQ=255)

                                                                                     aCTGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCAc    >  2:3503717/1‑93 (MQ=255)

                                                                                       tGATGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGc  >  2:3275607/1‑93 (MQ=255)

CGTTTTCATGGAAGATCCAGTCAAAAATGTAGTCATAGTTACCCACTGTACTGATCCAGCGCACCACTAACTCCCGGCGTTCGGTACTGACGTTGGGCTGGCCCATTTCCTGATGCTTATACTCCGGCCCGGCATAACGTTCAAATACCGCGATAGCGCGAGGGATCTCCATCGGCACGC  >  NC_000913/1447852‑1448031

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`