Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,690,632 A→G Y78H (TAT→CAT)  uidC ← membrane‑associated protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,690,6320AG98.1% 556.4 / ‑3.8 161Y78H (TAT→CAT) uidCmembrane‑associated protein
Reads supporting (aligned to +/- strand):  ref base A (0/3);  new base G (77/81);  total (77/84)
Fisher's exact test for biased strand distribution p-value = 2.47e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 169 total aligned reads displayed.

CTGCCCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATACGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTCTTC  >  NC_000913/1690542‑1690721
                                                                                          |                                                                                         
cTGCCCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCg                                                                                         >  1:775330/1‑93 (MQ=255)
  gCCCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGcc                                                                                       >  1:1982506/1‑93 (MQ=255)
    ccccAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGcccc                                                                                     >  1:4889896/1‑93 (MQ=255)
     cccAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCg                                                                                    >  1:84623/1‑93 (MQ=255)
     cccAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCg                                                                                    >  2:4510019/1‑93 (MQ=255)
      ccAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGc                                                                                   >  2:3894414/1‑93 (MQ=255)
       cAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGcc                                                                                  >  1:84907/1‑93 (MQ=255)
       cAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGcc                                                                                  <  1:3636243/93‑1 (MQ=255)
         gggCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCtt                                                                                >  2:2094114/1‑93 (MQ=255)
          ggCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTc                                                                               >  2:2219370/1‑93 (MQ=255)
          ggCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTc                                                                               >  1:194439/1‑93 (MQ=255)
           gCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCa                                                                              >  1:5898982/1‑93 (MQ=255)
           gCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCa                                                                              >  2:488263/1‑93 (MQ=255)
            cAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCaa                                                                             <  1:1439950/93‑1 (MQ=255)
            cAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCaa                                                                             <  1:5826950/93‑1 (MQ=255)
            cAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCaa                                                                             <  1:3455560/93‑1 (MQ=255)
            cAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCaa                                                                             >  1:5314222/1‑93 (MQ=255)
            cAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCaa                                                                             >  2:4924299/1‑93 (MQ=255)
            cAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCaa                                                                             >  2:4577237/1‑93 (MQ=255)
             aaaGCCAAACCTTTTATCACCATCAAGATACCACCGGGTACTCAGATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAAc                                                                            >  2:3142973/1‑93 (MQ=255)
             aaaGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAAc                                                                            <  2:3800760/93‑1 (MQ=255)
             aaaGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAAc                                                                            >  1:923511/1‑93 (MQ=255)
              aaGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACg                                                                           >  1:4835316/1‑93 (MQ=255)
              aaGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACg                                                                           >  2:4502064/1‑93 (MQ=255)
              aaGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCGAATTTATAAACATAATGCGCCCCGCCTTCAACg                                                                           >  2:5956674/1‑93 (MQ=255)
                gCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGcc                                                                         <  1:4572137/93‑1 (MQ=255)
                  cAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCaa                                                                       >  1:510736/1‑93 (MQ=255)
                  cAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCaa                                                                       <  2:806176/93‑1 (MQ=255)
                   aaaaCTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCaat                                                                      <  2:6100279/93‑1 (MQ=255)
                   aaaaCTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCaat                                                                      >  1:2343578/1‑93 (MQ=255)
                   aaaaCTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTAAACGCCagt                                                                      >  1:307790/1‑91 (MQ=255)
                    aaaCTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCaata                                                                     >  2:4496503/1‑93 (MQ=255)
                    aaaCTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCaata                                                                     <  2:5806297/93‑1 (MQ=255)
                     aaCTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCaataa                                                                    >  2:1917559/1‑93 (MQ=255)
                     aaCTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCaataa                                                                    <  2:6139704/93‑1 (MQ=255)
                       cTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAataata                                                                  <  1:4470452/93‑1 (MQ=255)
                       cTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAataata                                                                  <  2:5719321/93‑1 (MQ=255)
                       cTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAataata                                                                  <  2:2893596/93‑1 (MQ=255)
                        ttttATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAatat                                                                 >  1:4638012/1‑93 (MQ=255)
                        ttttATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAatat                                                                 <  1:5522597/93‑1 (MQ=255)
                         gttATCACCATCAGCATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATACGCCCCGCCTTCAACGCCAATAATAtt                                                                <  2:3205555/92‑1 (MQ=255)
                           tATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTgg                                                              >  2:814848/1‑93 (MQ=255)
                            aTCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGa                                                             <  2:2343161/93‑1 (MQ=255)
                              cACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGaat                                                           <  2:2210173/93‑1 (MQ=255)
                              cACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGaat                                                           <  1:353246/93‑1 (MQ=255)
                              cACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGaat                                                           <  2:2601591/93‑1 (MQ=255)
                                 cATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGaataat                                                        >  2:1397516/1‑93 (MQ=255)
                                 cATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGaataat                                                        >  1:1448709/1‑93 (MQ=255)
                                  aTCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAataata                                                       >  1:5791972/1‑93 (MQ=255)
                                     aaGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAAcc                                                    >  2:5590210/1‑93 (MQ=255)
                                     aaGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAAcc                                                    <  2:5390047/93‑1 (MQ=255)
                                       gATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCAc                                                  <  2:2614781/93‑1 (MQ=255)
                                       gATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCAc                                                  <  2:5105548/93‑1 (MQ=255)
                                       gATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCAc                                                  >  1:4928845/1‑93 (MQ=255)
                                         tACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACTTAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTa                                                >  2:868860/1‑93 (MQ=255)
                                         tACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTa                                                <  2:5983025/93‑1 (MQ=255)
                                         tACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTa                                                <  1:428933/93‑1 (MQ=255)
                                         tACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTa                                                <  2:31402/93‑1 (MQ=255)
                                            caccGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTg                                             >  2:3733982/1‑93 (MQ=255)
                                             accGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGa                                            <  2:1787772/93‑1 (MQ=255)
                                             accGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGa                                            >  1:3407022/1‑93 (MQ=255)
                                               cGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGaaa                                          <  1:4545517/93‑1 (MQ=255)
                                                 ggTACTCATATCAGCACGAGCACCTAATTTATAAACATAATACGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCGCTATTGAAATc                                        <  2:1175856/93‑1 (MQ=255)
                                                  gTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCg                                       <  1:3621464/93‑1 (MQ=255)
                                                   tACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGa                                      <  2:646409/93‑1 (MQ=255)
                                                    tcTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAg                                     <  1:3883224/92‑1 (MQ=255)
                                                    aCTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAg                                     <  2:3263816/93‑1 (MQ=255)
                                                    aCTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAg                                     >  2:4871086/1‑93 (MQ=255)
                                                     cTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGc                                    >  1:3096411/1‑93 (MQ=255)
                                                      tCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCa                                   >  1:4582941/1‑93 (MQ=255)
                                                       cATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCaa                                  >  1:4451265/1‑93 (MQ=255)
                                                       cATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCaa                                  <  1:1541343/93‑1 (MQ=255)
                                                        atatCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAAt                                 >  1:1458402/1‑93 (MQ=255)
                                                           tCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAAtcct                              <  1:1055793/93‑1 (MQ=255)
                                                            cAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAAtcctc                             <  1:4182465/93‑1 (MQ=255)
                                                             aGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAAtcctcc                            <  2:466856/93‑1 (MQ=255)
                                                                 cGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGt                        <  2:586577/93‑1 (MQ=255)
                                                                 cGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGt                        >  1:5978881/1‑93 (MQ=255)
                                                                  gAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTa                       <  1:3310720/93‑1 (MQ=255)
                                                                    gCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTAcc                     >  1:4011137/1‑93 (MQ=255)
                                                                    gCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTAcc                     >  1:2984246/1‑93 (MQ=255)
                                                                     cACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTAccc                    >  2:5680213/1‑93 (MQ=255)
                                                                      aCCTAATTTATAAACATAATGCGCCTCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCa                   <  2:1303922/93‑1 (MQ=255)
                                                                      aCCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCa                   <  2:3233968/93‑1 (MQ=255)
                                                                          aaTTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCg               >  2:2095121/1‑93 (MQ=255)
                                                                            tttATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTa             >  2:3490922/1‑93 (MQ=255)
                                                                            tttATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTa             >  1:247769/1‑93 (MQ=255)
                                                                             ttATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTaa            >  2:5845285/1‑93 (MQ=255)
                                                                              tataACCATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTaaa           <  1:2578949/93‑1 (MQ=255)
                                                                              tataAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTaaa           >  2:183532/1‑93 (MQ=255)
                                                                               ataAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAat          >  2:4110057/1‑93 (MQ=255)
                                                                                taAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAata         <  2:2701403/93‑1 (MQ=255)
                                                                                taAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAata         <  2:2379357/93‑1 (MQ=255)
                                                                                taAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAata         >  2:850942/1‑93 (MQ=255)
                                                                                   aCATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATAtct      <  1:646533/93‑1 (MQ=255)
                                                                                    cATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATAtctc     >  1:5654335/1‑93 (MQ=255)
                                                                                    cATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATAtctc     <  1:2763370/93‑1 (MQ=255)
                                                                                     ataatgCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATctct    <  2:74054/93‑1 (MQ=255)
                                                                                      taatgCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTCtt   <  1:5375056/93‑1 (MQ=255)
                                                                                       aatgCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTCTTc  >  1:1114904/1‑93 (MQ=255)
                                                                                          |                                                                                         
CTGCCCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATACGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTCTTC  >  NC_000913/1690542‑1690721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: