Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,313,133 T→C P542P (CCT→CCC yojN → putative 2‑component sensor protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,313,1330TC99.5% 769.4 / ‑4.6 211P542P (CCT→CCCyojNputative 2‑component sensor protein
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (114/96);  total (114/97)
Fisher's exact test for biased strand distribution p-value = 4.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.89e-01

Only 100 of 226 total aligned reads displayed.

GAACATGCTTGCGGATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCTGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATCGCGATGCCTTACGACG  >  NC_000913/2313043‑2313222
                                                                                          |                                                                                         
gAACATGCTTGCGGATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTtgcccgc                                                                                         >  1:1208664/1‑93 (MQ=255)
 aaCATGCTTGCGGATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTtgcccgcc                                                                                        <  1:4695874/93‑1 (MQ=255)
   cATGCTTGCGGATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCAt                                                                                      <  2:5849140/93‑1 (MQ=255)
    aTGCTTGCGGATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATc                                                                                     >  1:1769151/1‑93 (MQ=255)
    aTGCTTGCGGATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATc                                                                                     <  1:1669219/93‑1 (MQ=255)
     tGCTTGCGGATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCa                                                                                    >  1:4043986/1‑93 (MQ=255)
     tGCTTGCGGATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCa                                                                                    >  1:5602572/1‑93 (MQ=255)
      gCTTGCGGATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCaa                                                                                   >  2:4027191/1‑93 (MQ=255)
        ttGCGGATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGc                                                                                 >  1:1296206/1‑93 (MQ=255)
        ttGCGGATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGc                                                                                 >  1:880085/1‑93 (MQ=255)
         tGCGGATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCg                                                                                <  1:141775/93‑1 (MQ=255)
          gCGGATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGt                                                                               <  1:1866627/93‑1 (MQ=255)
            ggATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTaa                                                                             >  1:1897737/1‑93 (MQ=255)
            ggATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTaa                                                                             >  2:5676573/1‑93 (MQ=255)
            ggATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTaa                                                                             >  1:4835578/1‑93 (MQ=255)
            ggATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGGGTTGCCCGCCATCAAGCGTaa                                                                             <  2:2878374/93‑1 (MQ=255)
             gatgatAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTaaa                                                                            >  2:1329119/1‑93 (MQ=255)
             gatgatAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTaaa                                                                            <  2:3643554/93‑1 (MQ=255)
               tgatAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAgg                                                                          >  1:2770489/1‑93 (MQ=255)
               tgatAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAgg                                                                          >  1:677827/1‑93 (MQ=255)
               tgatAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAgg                                                                          >  2:3180473/1‑93 (MQ=255)
               tgatAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAgg                                                                          <  2:5062042/93‑1 (MQ=255)
                 atAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTc                                                                        <  2:1070837/93‑1 (MQ=255)
                  tAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCt                                                                       >  2:5824882/1‑93 (MQ=255)
                  tAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCt                                                                       >  1:5217834/1‑93 (MQ=255)
                      tGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCaa                                                                   <  1:4990315/93‑1 (MQ=255)
                      tGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCaa                                                                   >  1:4086313/1‑93 (MQ=255)
                      tGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCaa                                                                   >  1:1139053/1‑93 (MQ=255)
                       ggAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAAc                                                                  >  2:1809855/1‑93 (MQ=255)
                          aaaGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAActgc                                                               >  2:3517463/1‑93 (MQ=255)
                          aaaGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAActgc                                                               >  2:5190539/1‑93 (MQ=255)
                            aGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAActgctg                                                             >  1:3666187/1‑93 (MQ=255)
                             gTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGa                                                            >  1:2803187/1‑93 (MQ=255)
                             gTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGa                                                            >  1:3910855/1‑93 (MQ=255)
                              tGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGAt                                                           <  2:5155976/93‑1 (MQ=255)
                                 gaCGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTaa                                                        >  2:4269781/1‑93 (MQ=255)
                                  gcGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAAc                                                       <  1:3606040/92‑1 (MQ=255)
                                   cGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACa                                                      >  2:172247/1‑93 (MQ=255)
                                    ggTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACaa                                                     <  2:569466/93‑1 (MQ=255)
                                     gTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAat                                                    >  2:2936676/1‑93 (MQ=255)
                                     gTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAat                                                    >  2:3675417/1‑93 (MQ=255)
                                     gTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAat                                                    >  1:4930074/1‑93 (MQ=255)
                                     gTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAat                                                    <  2:2720693/93‑1 (MQ=255)
                                     gTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAat                                                    >  2:6013319/1‑93 (MQ=255)
                                      tGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAatc                                                   >  1:94592/1‑93 (MQ=255)
                                       gCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAatca                                                  >  1:3051971/1‑93 (MQ=255)
                                       gCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAatca                                                  <  1:4645688/93‑1 (MQ=255)
                                        cTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAatcat                                                 >  2:2104598/1‑93 (MQ=255)
                                        cTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAatcat                                                 >  1:5913253/1‑93 (MQ=255)
                                        cTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAatcat                                                 <  2:605414/93‑1 (MQ=255)
                                         tGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAatcatc                                                >  1:1044446/1‑93 (MQ=255)
                                         tGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAatcatc                                                >  2:1658799/1‑93 (MQ=255)
                                         tGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAatcatc                                                >  2:1217263/1‑93 (MQ=255)
                                          gTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCt                                               >  1:250051/1‑93 (MQ=255)
                                           ttttcCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTg                                              <  1:2272928/90‑1 (MQ=255)
                                             ctcCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGaa                                            <  1:4277238/93‑1 (MQ=255)
                                              tcCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGaaa                                           >  1:796532/1‑93 (MQ=255)
                                              tcCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGaaa                                           >  1:4190867/1‑93 (MQ=255)
                                               ccGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAg                                          >  2:2825310/1‑93 (MQ=255)
                                                cGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGc                                         <  2:3552707/93‑1 (MQ=255)
                                                 gTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGca                                        <  2:3094003/93‑1 (MQ=255)
                                                   gCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGcaca                                      >  2:1022787/1‑93 (MQ=255)
                                                   gCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGcaca                                      >  2:4800576/1‑93 (MQ=255)
                                                   gCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGcaca                                      >  1:5749015/1‑93 (MQ=255)
                                                   gCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGcaca                                      <  2:5942940/93‑1 (MQ=255)
                                                   gCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGGCTGCAACTGCTGATTAACAATCATCTGAAAGcaca                                      >  2:3446791/1‑93 (MQ=255)
                                                    cAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCacac                                     <  1:4958268/93‑1 (MQ=255)
                                                    cAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAACCacac                                     >  2:5269835/1‑93 (MQ=255)
                                                     aGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACg                                    >  2:4310640/1‑93 (MQ=255)
                                                      ggATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGa                                   >  2:3300776/1‑93 (MQ=255)
                                                       gATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGat                                  <  1:3148893/93‑1 (MQ=255)
                                                        aTTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAACGCCCACGata                                 >  2:4692804/1‑93 (MQ=255)
                                                         tttAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGatat                                <  1:477634/93‑1 (MQ=255)
                                                          ttAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATg                               <  1:2959795/93‑1 (MQ=255)
                                                          ttAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATg                               <  1:3111274/93‑1 (MQ=255)
                                                           tAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATgc                              <  1:2666127/93‑1 (MQ=255)
                                                           tAATTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATgc                              <  2:1430415/93‑1 (MQ=255)
                                                             aTTGATGAAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATgcgc                            >  1:2301295/1‑93 (MQ=255)
                                                                 atgaAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCcgcg                        <  2:2007247/93‑1 (MQ=255)
                                                                 atgaAGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCcgcg                        >  2:1831453/1‑93 (MQ=255)
                                                                    aaGTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCgcggcg                     >  2:4999864/1‑93 (MQ=255)
                                                                      gTTGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGAt                   <  1:309347/93‑1 (MQ=255)
                                                                       ttGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATc                  <  2:5294340/93‑1 (MQ=255)
                                                                       ttGTGCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATc                  <  2:4158840/93‑1 (MQ=255)
                                                                        tgtgCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATcg                 >  2:3250560/1‑93 (MQ=255)
                                                                         gtgCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATcgc                >  1:371222/1‑93 (MQ=255)
                                                                         gtgCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATcgc                >  2:11609/1‑93 (MQ=255)
                                                                         gtgCCTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATcgc                >  1:565159/1‑93 (MQ=255)
                                                                            ccTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATCGCGAt             <  1:2218408/93‑1 (MQ=255)
                                                                             cTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATCGCGAtc            >  2:2847686/1‑92 (MQ=255)
                                                                             cTTCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATCGCGATg            <  1:3411577/93‑1 (MQ=255)
                                                                              ttCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATCGCGATGc           >  1:288805/1‑93 (MQ=255)
                                                                               tCAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATCGCGATGcc          >  1:160863/1‑93 (MQ=255)
                                                                                cAGTGTTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATCGCGATGCCt         <  1:3284918/93‑1 (MQ=255)
                                                                                   tgtTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACATTCATCTGAAAGCACACGATATGCGCCGCGGCGATCGCGATGCCTTac      <  2:3880762/93‑1 (MQ=255)
                                                                                   tgtTGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATCGCGATGCCTTac      <  1:1951793/93‑1 (MQ=255)
                                                                                     ttGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATCGCGATGCCTTacga    <  2:3929699/93‑1 (MQ=255)
                                                                                     ttGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATCGCGATGCCTTacga    >  2:2573530/1‑93 (MQ=255)
                                                                                     ttGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATCGCGATGCCTTacga    >  1:351764/1‑93 (MQ=255)
                                                                                     ttGCCCGCCATCAAGCGTAAAGGTCTGCAACTGCTAATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATCGCGATGCCTTacga    >  1:608519/1‑93 (MQ=255)
                                                                                          |                                                                                         
GAACATGCTTGCGGATGATAGCTGGAAAAGTGAGACGGTGCTGTTCTCCGTGCAGGATTTAATTGATGAAGTTGTGCCTTCAGTGTTGCCTGCCATCAAGCGTAAAGGTCTGCAACTGCTGATTAACAATCATCTGAAAGCACACGATATGCGCCGCGGCGATCGCGATGCCTTACGACG  >  NC_000913/2313043‑2313222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: