| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,957,092 | +CC | intergenic (+26/+58) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,957,091 | 1 | . | C | 95.4% | 401.8 / 16.1 | 153 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/7); new base C (5/141); total (5/148) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.87e-01 | |||||||||||
| * | NC_000913 | 3,957,091 | 2 | . | C | 95.4% | 402.6 / 16.1 | 153 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/7); new base C (5/141); total (5/148) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.41e-01 | |||||||||||
Only 100 of 167 total aligned reads displayed.
TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3956999‑3957173 || tGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑c < 2:3254375/93‑1 (MQ=255) aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑ccc < 2:1551755/93‑3 (MQ=255) aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑ccc < 2:3112562/93‑3 (MQ=255) aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑ccc < 2:5164218/93‑3 (MQ=255) gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑ccc‑‑‑t < 1:703850/93‑1 (MQ=255) cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccc‑‑‑tc < 1:1021298/93‑1 (MQ=255) cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccc‑‑‑tc < 2:809937/93‑1 (MQ=255) cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccc‑‑‑tc < 1:1555842/93‑1 (MQ=255) gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCcaca < 2:408603/93‑1 (MQ=38) taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACag < 1:2864458/93‑1 (MQ=37) aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACagg < 1:2420264/93‑1 (MQ=37) aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACaggg < 1:3184175/93‑1 (MQ=37) gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCGCCCCG‑‑ACCCTC‑‑‑TCCCACaggga < 1:3927307/93‑1 (MQ=37) gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACaggga < 2:6031079/93‑1 (MQ=37) gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACaggga < 2:5567110/93‑1 (MQ=37) gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACaggga < 2:4771747/93‑1 (MQ=37) gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACaggga < 2:2121284/93‑1 (MQ=37) aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACagggagag < 1:80414/93‑1 (MQ=37) cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACagggagagg < 2:1259763/93‑1 (MQ=25) cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACagggagagg < 1:4563853/93‑1 (MQ=25) tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACagggagaggg < 1:152831/93‑1 (MQ=25) gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACagggagaggga < 1:177466/93‑1 (MQ=25) cgcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACagggagagggag < 2:3759527/93‑1 (MQ=25) gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGaaaa < 1:5135331/93‑1 (MQ=21) gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑ACCCCC‑‑‑TCCCACAGGGAGCGGGAGaaaa > 2:3279794/1‑93 (MQ=21) tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAaca < 1:5849000/93‑1 (MQ=21) tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCCCACCCCC‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAaca > 2:5469641/1‑93 (MQ=21) tataTGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCCCAACCCGACA‑‑CTC‑‑‑TCCCCCCAGGGGAGGGGGAAAaca > 1:3343323/1‑93 (MQ=25) atatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAacac < 2:2783006/93‑1 (MQ=21) atGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTc < 2:1174069/93‑1 (MQ=21) atGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTc < 2:2793655/93‑1 (MQ=21) gACAGATATGAAGCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCGCCC‑‑CGC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑aa < 2:3294301/93‑1 (MQ=18) gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑aa < 2:1806617/93‑1 (MQ=21) gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑aa < 1:2508504/93‑1 (MQ=21) gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑aa < 1:1904400/93‑1 (MQ=21) aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑g < 1:1973059/93‑1 (MQ=21) aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑g < 2:397507/93‑1 (MQ=21) aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑g < 1:3033432/93‑1 (MQ=21) aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑g < 2:675265/93‑1 (MQ=21) aCAGATATGAAACGTATTGCTGTTGCAGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑g < 1:5979940/93‑1 (MQ=21) cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑gg < 1:5549775/93‑2 (MQ=21) aGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggc < 2:1443408/93‑3 (MQ=21) gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggcc < 1:9338/93‑4 (MQ=21) atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑ggcct < 2:5607446/93‑5 (MQ=21) atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAAGGAGAAAACACTC‑AA‑ggcct < 2:6649291/93‑5 (MQ=21) atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtc < 1:2687964/93‑1 (MQ=18) atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTtc < 2:2281234/93‑1 (MQ=18) aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 2:392906/93‑1 (MQ=18) aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTcc < 2:4103406/93‑1 (MQ=18) accGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCGCCC‑‑CTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCt < 1:4575859/91‑1 (MQ=18) aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCt < 2:4929641/93‑1 (MQ=18) aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTg < 2:3706130/93‑1 (MQ=18) aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTg < 2:3890355/93‑1 (MQ=21) cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTgg < 1:2062873/93‑1 (MQ=18) cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTgg < 1:5716829/93‑1 (MQ=18) cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTgg < 2:624573/93‑1 (MQ=18) gTATTGCTGTTGCGGGTGAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGga < 2:399765/93‑1 (MQ=18) ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCTCACCGCGAGAGGGAGAAAAAACGCAAA‑GCCTTCTCCTGGAGaa > 2:4808822/1‑93 (MQ=18) ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGaa < 1:3736839/93‑1 (MQ=18) ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGaa < 1:5425655/93‑1 (MQ=18) ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGaa < 1:2692190/93‑1 (MQ=18) ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGaa < 1:4010176/93‑1 (MQ=18) tGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAg < 2:888500/93‑1 (MQ=18) cTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGc < 2:5464697/93‑1 (MQ=18) tGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGcc < 1:1270206/93‑1 (MQ=18) tGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGcc < 2:4740879/93‑1 (MQ=18) tttGCGGGTTAAGTTCGCGCTGATCCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGTGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCt < 1:552755/92‑1 (MQ=18) gTTGCGGTTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCt < 1:6429211/93‑1 (MQ=18) gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCt < 1:5530893/93‑1 (MQ=18) gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCt < 2:4337576/93‑1 (MQ=18) ttGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCtt < 1:4950168/93‑1 (MQ=18) ttGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCtt < 2:5130233/93‑1 (MQ=18) tGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTg < 2:1958098/93‑1 (MQ=18) gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 2:657926/93‑1 (MQ=18) gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:3748690/93‑1 (MQ=18) gCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGc < 2:5063741/93‑1 (MQ=18) cGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCt < 2:3034061/93‑1 (MQ=18) gggTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTa < 1:4431487/93‑1 (MQ=18) ggTTAAGTGCGCGCTGCTGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAt < 1:398457/93‑1 (MQ=18) ggTTAAGTGCGCGCTGATGCCCCCCCCCCC‑‑C‑‑CCCCCTTCCCCCGGGGGGGGGGGGAAAAAACCC‑AA‑GCCCTCCCCTGGGGAAGGCCCTGCttt > 2:4506482/1‑91 (MQ=255) gTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt < 2:2273293/93‑1 (MQ=18) tAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 2:5187312/93‑1 (MQ=18) aaGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 1:3226459/93‑1 (MQ=18) aaGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:1487841/93‑1 (MQ=18) aGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 2:2729588/93‑1 (MQ=18) aGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:5071597/93‑1 (MQ=18) aGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:5640282/93‑1 (MQ=18) gTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTg < 2:1970743/93‑1 (MQ=18) tGCGCGCTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 2:4398858/93‑1 (MQ=21) gcgcgcTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 1:2529276/93‑1 (MQ=21) cgcgcTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 2:6278852/93‑1 (MQ=21) cgcgcTGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCGCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 1:6403099/93‑1 (MQ=18) tGATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAg < 1:2980254/93‑1 (MQ=25) gATGCCCTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 2:3058079/93‑1 (MQ=25) ccTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGGGAGGGAGAAAACACTC‑AAGGCCTTTTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt > 2:3315625/1‑93 (MQ=25) ccTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt < 1:5960311/93‑1 (MQ=25) cTCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTa > 1:6513542/1‑93 (MQ=37) tCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 1:1019747/93‑1 (MQ=37) tCACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 1:2986405/93‑1 (MQ=37) cACCCCG‑‑ACCCTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 1:79103/93‑1 (MQ=37) || TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTC‑‑‑TCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3956999‑3957173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |