BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,380,158	C→T	P63L (CCG→CTG)	ompG →	outer membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,380,158	0	C	T	84.2%	596.9 / 77.7	221	P63L (CCG→CTG)	ompG	outer membrane protein
Reads supporting (aligned to +/- strand): ref base C (17/18); new base T (96/90); total (113/108)
Fisher's exact test for biased strand distribution p-value = 8.54e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01

Only 100 of 228 total aligned reads displayed.

CGATGTACGAAATAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCCGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGTTTGATCGCCCGGAGCTGGA  >  NC_000913/1380068‑1380248

 gATGTACGAAATAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCtgtg                                                                                         <  1:1796059/93‑1 (MQ=255)

  aTGTACGAAATAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTgg                                                                                        >  2:2378418/1‑93 (MQ=255)

   tGTACGAAATAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGga                                                                                       <  2:5021345/93‑1 (MQ=255)

   tGTACGAAATAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGga                                                                                       <  2:6303771/93‑1 (MQ=255)

      aCGAAATAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGaa                                                                                    >  1:6075346/1‑93 (MQ=255)

      aCGAAATAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCCGTGGAGaa                                                                                    >  1:1109864/1‑93 (MQ=255)

       cGAAATAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGGGGAGAAt                                                                                   >  2:1792365/1‑93 (MQ=255)

       cGAAATAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCCGTGGAGAAt                                                                                   <  2:1314124/93‑1 (MQ=255)

        gAAATAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGaagt                                                                                  >  2:260016/1‑91 (MQ=255)

         aaaTAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTg                                                                                 >  2:764220/1‑93 (MQ=255)

         aaaTAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCCGTGGAGAATTg                                                                                 >  2:6400970/1‑93 (MQ=255)

          aaTAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGc                                                                                <  2:3586337/93‑1 (MQ=255)

          aaTAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCCGTGGAGAATTGc                                                                                <  2:5273231/93‑1 (MQ=255)

           aTAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGGCTTCAGGCTATTTTAATGCCGCCAACGGGGTGTGGAGAATTGct                                                                               >  1:5821361/1‑93 (MQ=255)

           aTAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGct                                                                               >  2:6639410/1‑93 (MQ=255)

           aTAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGct                                                                               <  1:4787199/93‑1 (MQ=255)

           aTAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGct                                                                               >  1:3400150/1‑93 (MQ=255)

            tAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGctc                                                                              <  2:625114/93‑1 (MQ=255)

            aaGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAACTTTCAGTCTATTTTAATGCCGACAGCGGGCTGTGGAGAATTGctc                                                                              <  1:2282861/92‑1 (MQ=255)

              gAAAGCGTCGGGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTg                                                                            <  2:5135497/93‑1 (MQ=255)

              gAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCCGTGGAGAATTGCTCTg                                                                            >  1:6164452/1‑93 (MQ=255)

              gAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTCAATGCCGCCAACGGGCCGTGGAGAATTGCTCTg                                                                            <  2:3732239/93‑1 (MQ=255)

                aaaCGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGc                                                                          >  2:2878373/1‑93 (MQ=255)

                 aaCGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGcc                                                                         >  2:6525170/1‑93 (MQ=255)

                 aaCGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGcc                                                                         >  1:6249602/1‑93 (MQ=255)

                 aaCGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGcc                                                                         <  2:6189821/93‑1 (MQ=255)

                     tCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCtatt                                                                     <  1:5531528/93‑1 (MQ=255)

                     tCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCCGTGGAGAATTGCTCTGGCCtatt                                                                     >  1:3207741/1‑93 (MQ=255)

                      cGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCtatta                                                                    >  1:6300584/1‑93 (MQ=255)

                         gggTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCa                                                                 <  1:6258080/93‑1 (MQ=255)

                         gggTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCa                                                                 >  2:2207579/1‑93 (MQ=255)

                         gggTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCa                                                                 >  2:4326718/1‑93 (MQ=255)

                         gggTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCa                                                                 <  1:4851984/93‑1 (MQ=255)

                          ggTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAg                                                                >  1:948637/1‑93 (MQ=255)

                           gTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTTTGGAGAATTGCTCTGGCCTATTATCAga                                                               >  1:2949221/1‑92 (MQ=255)

                            ttATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGa                                                              <  2:4869914/93‑1 (MQ=255)

                            ttATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCCGTGGAGAATTGCTCTGGCCTATTATCAGGa                                                              <  1:4720919/93‑1 (MQ=255)

                             tATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGaa                                                             <  1:5161361/93‑1 (MQ=255)

                             tATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCCGTGGAGAATTGCTCTGGCCTATTATCAGGaa                                                             >  1:1056991/1‑93 (MQ=255)

                              aTGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAg                                                            >  2:5493128/1‑93 (MQ=255)

                               tGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAgg                                                           <  1:5639736/93‑1 (MQ=255)

                               tGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAgg                                                           <  1:3639063/93‑1 (MQ=255)

                                  cGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGcc                                                        <  2:3528767/93‑1 (MQ=255)

                                   gAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCg                                                       >  2:4613360/1‑93 (MQ=255)

                                     aGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGt                                                     <  2:6075346/93‑1 (MQ=255)

                                     aGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCCGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGt                                                     >  2:2486104/1‑93 (MQ=255)

                                     aGATATGGATGGGCTGGCGGAACCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGt                                                     >  1:4224550/1‑93 (MQ=255)

                                      gATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTa                                                    >  1:5683478/1‑93 (MQ=255)

                                      aatatGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTa                                                    <  2:5593953/92‑1 (MQ=255)

                                       atatGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAg                                                   <  2:3432528/93‑1 (MQ=255)

                                          tggatggGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGAtt                                                <  2:545383/93‑1 (MQ=255)

                                           ggatggGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATta                                               <  1:1224268/93‑1 (MQ=255)

                                            gatggGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATtat                                              <  2:1295644/93‑1 (MQ=255)

                                            gatggGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATtat                                              >  1:6639977/1‑93 (MQ=255)

                                              tggGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAg                                            >  1:4261361/1‑93 (MQ=255)

                                              tggGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAg                                            <  2:4899419/93‑1 (MQ=255)

                                                ggCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAgcg                                          >  1:3490411/1‑93 (MQ=255)

                                                  cTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGcgcg                                        >  1:4559725/1‑93 (MQ=255)

                                                   tGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCgg                                       >  2:2268927/1‑93 (MQ=255)

                                                   tGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCgg                                       <  2:1913187/93‑1 (MQ=255)

                                                    ggCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCggg                                      >  1:2510411/1‑93 (MQ=255)

                                                    ggCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCggg                                      <  1:3799047/93‑1 (MQ=255)

                                                    ggCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCggg                                      <  1:5479682/93‑1 (MQ=255)

                                                     gCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGt                                     <  2:2582224/93‑1 (MQ=255)

                                                     gCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGt                                     >  2:2095495/1‑93 (MQ=255)

                                                     gCGGAGCCTTCAGTCTATTTTAATGCCACCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGt                                     <  2:1464800/93‑1 (MQ=255)

                                                      cGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAgg                                                               <  1:2263696/66‑1 (MQ=255)

                                                      cGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCCGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTa                                    <  2:4254535/93‑1 (MQ=255)

                                                       ggAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTaa                                   >  1:69774/1‑93 (MQ=255)

                                                       ggAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTaa                                   <  2:3938555/93‑1 (MQ=255)

                                                         aGCCTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAaac                                 <  2:5181865/93‑1 (MQ=255)

                                                           ccTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAaacgt                               >  2:4211710/1‑93 (MQ=255)

                                                           ccTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCT‑GCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAaacgtg                              <  1:5251327/93‑1 (MQ=255)

                                                           ccTTCAGTCTATTTTAATGCCGCCAACGGGCCGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAaacgt                               <  1:1983136/93‑1 (MQ=255)

                                                            cTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAaacgtg                              <  2:3639020/93‑1 (MQ=255)

                                                            cTTCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAaacgtg                              >  1:759472/1‑93 (MQ=255)

                                                             ttCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGTCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAaacgtgg                             <  1:3923256/93‑1 (MQ=255)

                                                             ttCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAaacgtgg                             >  2:1434955/1‑93 (MQ=255)

                                                             ttCAGTCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAaacgtgg                             >  2:443139/1‑93 (MQ=255)

                                                                  tCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAaacgtggaacgt                        >  2:4725068/1‑93 (MQ=255)

                                                                  tCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAaacgtggaacgt                        >  2:2447162/1‑93 (MQ=255)

                                                                  tCTATTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAaacgtggaacgt                        >  1:2733584/1‑93 (MQ=255)

                                                                    tATTTTAGTGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAaacgtggaacgtgg                      >  1:6536582/1‑93 (MQ=255)

                                                                     aTTTTAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGt                     >  2:948934/1‑93 (MQ=255)

                                                                       tttAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGttt                   <  1:6318550/93‑1 (MQ=255)

                                                                       tttAATGCCGCCAACGGGCCGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGttt                   <  2:3204168/93‑1 (MQ=255)

                                                                         tAATGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGTTTGa                 <  2:5750519/93‑1 (MQ=255)

                                                                          aaTGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGGTTGAt                >  1:5717460/1‑93 (MQ=255)

                                                                          aaTGACGCCAACGGGCGGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGTTTGAt                <  2:3663834/93‑1 (MQ=255)

                                                                           aTGCCGCCAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGTTTGATc               >  1:2305559/1‑93 (MQ=255)

                                                                             gccgccAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGTAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGTTTGATCGc             >  2:4673720/1‑93 (MQ=255)

                                                                                  cAACGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGTTTGATCGCCCGGa        >  1:287464/1‑93 (MQ=255)

                                                                                    aCGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGTTTGATCGCCCGGAGc      >  1:6033431/1‑93 (MQ=255)

                                                                                    aCGGGCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGTTTGATCGCCCGGAGc      >  1:1627936/1‑93 (MQ=255)

                                                                                    aCGGGCCGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGTTTGATCGCCCGGAGc      <  2:5990651/93‑1 (MQ=255)

                                                                                       ggCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGTTTGATCGCCCGGAGCTgg   <  1:3721851/93‑1 (MQ=255)

                                                                                       ggCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGTTTGATCGCCCGGAGCTgg   >  1:4189856/1‑93 (MQ=255)

                                                                                       ggCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGTTTGATCGCCCGGAGCTgg   <  1:2084278/93‑1 (MQ=255)

                                                                                       ggCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGTTTGATCGCCCGGAGCTgg   <  2:1096793/93‑1 (MQ=255)

                                                                                       ggCTGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGTTTGATCGCCCGGAGCTgg   <  1:1453661/93‑1 (MQ=255)

CGATGTACGAAATAGAAAACGTCGAGGGTTATGGCGAAGATATGGATGGGCTGGCGGAGCCTTCAGTCTATTTTAATGCCGCCAACGGGCCGTGGAGAATTGCTCTGGCCTATTATCAGGAAGGGCCGGTAGATTATAGCGCGGGTAAACGTGGAACGTGGTTTGATCGCCCGGAGCTGGA  >  NC_000913/1380068‑1380248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`