BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,672,424	T→C	L163P (CTC→CCC)	b1601 →	putative transport protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,672,424	0	T	C	100.0%	835.0 / NA	229	L163P (CTC→CCC)	b1601	putative transport protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (123/106); total (123/106)

Only 100 of 236 total aligned reads displayed.

CGATGACGTTGCTCACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCTCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTG  >  NC_000913/1672334‑1672513

 gATGACGTTGCTCACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGa                                                                                        >  1:1524119/1‑93 (MQ=255)

  aTGACGTTGCTCACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGaa                                                                                       <  2:1610057/93‑1 (MQ=255)

   tGACGTTGCTCACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAg                                                                                      <  2:398663/93‑1 (MQ=255)

   tGACGTTGCTCACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAg                                                                                      >  1:2031849/1‑93 (MQ=255)

   tGACGTTGCTCACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAg                                                                                      <  2:6346472/93‑1 (MQ=255)

    gACGTTGCTCACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGt                                                                                     >  1:4482328/1‑93 (MQ=255)

    gACGTTGCTCACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGt                                                                                     >  1:3416249/1‑93 (MQ=255)

     aCGTTGCTCACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTg                                                                                    >  1:6314850/1‑93 (MQ=255)

      cGTTGCTCACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGc                                                                                   >  2:33270/1‑93 (MQ=255)

        ttGCTCACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCca                                                                                 >  1:309668/1‑93 (MQ=255)

         tGCTCACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCcac                                                                                >  2:3631658/1‑93 (MQ=255)

          gCTCACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCcaca                                                                               >  2:2879317/1‑93 (MQ=255)

           cTCACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACaa                                                                              <  2:4976306/93‑1 (MQ=255)

            tCACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAAt                                                                             <  1:4833104/93‑1 (MQ=255)

             cACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAAtt                                                                            <  2:2438069/93‑1 (MQ=255)

             cACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAAtt                                                                            <  1:6261724/93‑1 (MQ=255)

             cACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAAtt                                                                            <  2:2767224/93‑1 (MQ=255)

             cACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAAtt                                                                            <  1:2243614/93‑1 (MQ=255)

             cACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAAtt                                                                            >  1:207901/1‑93 (MQ=255)

               ccAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGc                                                                          >  1:2404602/1‑93 (MQ=255)

               ccAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGc                                                                          <  1:3676346/93‑1 (MQ=255)

                cAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGcc                                                                         <  2:6405165/93‑1 (MQ=255)

                 aaCTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGccc                                                                        >  2:6512026/1‑93 (MQ=255)

                    ttATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGa                                                                     >  2:3817749/1‑93 (MQ=255)

                    ttATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGa                                                                     >  1:1826351/1‑93 (MQ=255)

                     tATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGaa                                                                    >  2:3714109/1‑93 (MQ=255)

                      aTTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGaaa                                                                   >  2:1311252/1‑93 (MQ=255)

                       ttGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGaaaa                                                                  >  1:1933274/1‑93 (MQ=255)

                       ttGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGaaaa                                                                  >  1:4853247/1‑93 (MQ=255)

                       ttGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGaaaa                                                                  >  1:1207498/1‑93 (MQ=255)

                         gACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAAtt                                                                <  2:3282871/93‑1 (MQ=255)

                         gACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAAtt                                                                <  2:3864774/93‑1 (MQ=255)

                          gcGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAAttt                                                               <  2:858921/92‑1 (MQ=255)

                               gTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCa                                                          >  2:970139/1‑93 (MQ=255)

                               gTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCa                                                          >  1:215663/1‑93 (MQ=255)

                                 tATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCaaa                                                        <  1:5411671/93‑1 (MQ=255)

                                  aTCTAATGCCATGTCATCGATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAat                                                       >  1:2601205/1‑93 (MQ=255)

                                   tCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAatg                                                      >  1:4341850/1‑93 (MQ=255)

                                   tCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAatg                                                      >  2:6088796/1‑93 (MQ=255)

                                   tCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAatg                                                      <  1:171225/93‑1 (MQ=255)

                                    cTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAatga                                                     >  2:1086107/1‑93 (MQ=255)

                                      aaTGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAatgatt                                                   <  2:6268084/93‑2 (MQ=255)

                                      aaTGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAatgatg                                                   <  1:2966996/93‑1 (MQ=255)

                                       aTGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATgg                                                  <  1:4800206/93‑1 (MQ=255)

                                         gCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGgcg                                                >  2:663625/1‑93 (MQ=255)

                                           cATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGcgcg                                              >  1:3368402/1‑93 (MQ=255)

                                            aTGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGt                                             >  2:4727358/1‑93 (MQ=255)

                                            aTGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGt                                             >  1:3795823/1‑93 (MQ=255)

                                            aTGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGt                                             >  1:1859851/1‑93 (MQ=255)

                                            aTGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGt                                             >  1:5966901/1‑93 (MQ=255)

                                             tGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTc                                            <  1:4246178/93‑1 (MQ=255)

                                             tGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTc                                            <  2:5908059/93‑1 (MQ=255)

                                             tGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTc                                            >  1:1401263/1‑93 (MQ=255)

                                             tGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTc                                            >  1:233079/1‑93 (MQ=255)

                                               tcatcaATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCg                                          >  1:5148003/1‑93 (MQ=255)

                                                catcaATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCgg                                         >  2:1795891/1‑93 (MQ=255)

                                                  tcaATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGtt                                       >  2:4298016/1‑93 (MQ=255)

                                                   caATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTg                                      >  1:5637676/1‑93 (MQ=255)

                                                    aaTATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGa                                     >  1:1291505/1‑93 (MQ=255)

                                                    aaTATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGa                                     <  1:488458/93‑1 (MQ=255)

                                                       atTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAgg                                  <  1:5189521/93‑1 (MQ=255)

                                                       atTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAgg                                  >  1:4985478/1‑93 (MQ=255)

                                                       atTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAgg                                  <  1:4089921/93‑1 (MQ=255)

                                                          tttATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGAt                               <  2:492146/93‑1 (MQ=255)

                                                          tttATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGAt                               <  2:3054979/93‑1 (MQ=255)

                                                          tttATTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCACGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGAt                               <  1:3507082/93‑1 (MQ=255)

                                                             aTTGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATggc                            >  1:3892079/1‑93 (MQ=255)

                                                             aTTACTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAACATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATgac                            >  1:573435/1‑91 (MQ=255)

                                                              ttGCTGCTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATggcg                           <  1:6140759/93‑1 (MQ=255)

                                                               tgctgcTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATggcgg                          <  1:5505411/93‑1 (MQ=255)

                                                               tgctgcTGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATggcgg                          >  2:4337029/1‑93 (MQ=255)

                                                                gctgctGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATggcggc                         <  2:3838615/93‑1 (MQ=255)

                                                                gctgctGACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATggcggc                         >  1:5266039/1‑93 (MQ=255)

                                                                 ctgctgACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGgcggcg                        >  2:602364/1‑93 (MQ=255)

                                                                  tgctgACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGa                       <  2:2282660/93‑1 (MQ=255)

                                                                   gctgACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGAt                      >  2:4847787/1‑93 (MQ=255)

                                                                     tgACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGACCGGGTGAACGGATGGAGGCGAGTc                    >  1:6224257/1‑93 (MQ=255)

                                                                      gACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCa                   >  2:5614680/1‑93 (MQ=255)

                                                                      gACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCa                   <  1:4945775/93‑1 (MQ=255)

                                                                      gACGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGAGGCGATTCa                   >  1:3226020/1‑93 (MQ=255)

                                                                       aCGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGTTGATTCaa                  <  1:6539409/93‑1 (MQ=255)

                                                                       aCGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCaa                  <  2:4575464/93‑1 (MQ=255)

                                                                        cGGTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAAc                 >  2:466576/1‑93 (MQ=255)

                                                                         ggTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACg                >  2:2868268/1‑93 (MQ=255)

                                                                          gTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCaaggg               >  1:1992540/1‑90 (MQ=255)

                                                                          gTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACgg               >  2:751701/1‑92 (MQ=255)

                                                                          gTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACGt               <  2:2150730/93‑1 (MQ=255)

                                                                          gTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACGt               >  2:1945561/1‑93 (MQ=255)

                                                                          gTGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACGt               <  1:9868/93‑1 (MQ=255)

                                                                           tGCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACGTg              >  1:2173575/1‑93 (MQ=255)

                                                                            gCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACGTGc             >  2:5588799/1‑93 (MQ=255)

                                                                            gCTGTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACGTGc             >  2:1046527/1‑93 (MQ=255)

                                                                               gTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGAt          <  2:2545808/93‑1 (MQ=255)

                                                                               gTTTATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGAt          <  1:4177757/93‑1 (MQ=255)

                                                                                 ttATGCTGCCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTg        <  1:5926702/93‑1 (MQ=255)

                                                                                   aTGCTGCCCGAAGGGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGAc      <  1:2811913/93‑1 (MQ=255)

                                                                                    tgctgcCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACa     <  2:3246158/93‑1 (MQ=255)

                                                                                    tgctgcCCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACa     <  1:1056203/93‑1 (MQ=255)

                                                                                      ctgccCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGCCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAgg   >  1:900398/1‑92 (MQ=255)

                                                                                       tgccCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAgtg  >  1:2556382/1‑93 (MQ=255)

CGATGACGTTGCTCACCAACTTATTGACGCAGTTATCTAATGCCATGTCATCAATATTTTTATTGCTGCTGACGGTGCTGTTTATGCTGCTCGAAGTGCCACAATTGCCCGGAAAATTTCAGCAAATGATGGCGCGTCCGGTTGAAGGGATGGCGGCGATTCAACGTGCGATTGACAGTG  >  NC_000913/1672334‑1672513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`