Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,552,922 T→C N94S (AAC→AGC)  yfeG ← putative ARAC‑type regulatory protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,552,9220TC87.0% 718.7 / 84.3 270N94S (AAC→AGC) yfeGputative ARAC‑type regulatory protein
Reads supporting (aligned to +/- strand):  ref base T (20/15);  new base C (113/122);  total (133/137)
Fisher's exact test for biased strand distribution p-value = 3.67e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.58e-01

Only 100 of 275 total aligned reads displayed.

CAGGGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTCACC  >  NC_000913/2552830‑2553013
                                                                                            |                                                                                           
  gggCGGGTGGCGATTTCCGCGCTTCCGAGACATCGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTc                                                                                           <  1:5356626/93‑1 (MQ=255)
  gggCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTc                                                                                           <  1:1375043/93‑1 (MQ=255)
      gggTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGcc                                                                                       >  2:1903010/1‑93 (MQ=255)
       ggTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCa                                                                                      >  2:822523/1‑93 (MQ=255)
        gTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAg                                                                                     <  1:4968669/93‑1 (MQ=255)
            cGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCa                                                                                 <  2:6419266/93‑1 (MQ=255)
             gATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAg                                                                                >  2:4232580/1‑93 (MQ=255)
             gATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAg                                                                                >  1:2363796/1‑93 (MQ=255)
              aTTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAgg                                                                               >  1:3842488/1‑93 (MQ=255)
              aTTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAgg                                                                               >  1:5429318/1‑93 (MQ=255)
              aTTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAgg                                                                               >  1:6568898/1‑93 (MQ=255)
              aTTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAgg                                                                               >  2:3351419/1‑93 (MQ=255)
               tttCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGc                                                                              >  2:498374/1‑93 (MQ=255)
                ttCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCa                                                                             <  1:614994/93‑1 (MQ=255)
                   cgcgCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGa                                                                          <  2:1006298/93‑1 (MQ=255)
                   cgcgCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGa                                                                          >  2:272493/1‑93 (MQ=255)
                    gcgcTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGAc                                                                         >  2:2954680/1‑93 (MQ=255)
                    gcgcTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGAc                                                                         <  2:4194328/93‑1 (MQ=255)
                    gcgcTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGAc                                                                         >  1:106703/1‑93 (MQ=255)
                      gcTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTg                                                                       >  2:749760/1‑93 (MQ=255)
                       cTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGa                                                                      <  2:5075499/93‑1 (MQ=255)
                        ttCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGTATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGAc                                                                     >  2:3800142/1‑93 (MQ=255)
                        ttCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGAc                                                                     >  2:1828925/1‑93 (MQ=255)
                         tCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACg                                                                    >  1:2310569/1‑93 (MQ=255)
                           ccAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCa                                                                  >  1:2418892/1‑93 (MQ=255)
                             aGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAgc                                                                <  1:946652/93‑1 (MQ=255)
                             aGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAgc                                                                <  1:2115248/93‑1 (MQ=255)
                             aGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAgc                                                                >  2:4316974/1‑93 (MQ=255)
                              gACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAgcg                                                               >  1:4419898/1‑93 (MQ=255)
                                cATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGcc                                                             <  2:5791910/93‑1 (MQ=255)
                                cATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGcc                                                             <  1:3383599/93‑1 (MQ=255)
                                  ttGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAg                                                           <  1:1682714/93‑1 (MQ=255)
                                   tGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGa                                                          <  2:1108737/93‑1 (MQ=255)
                                    gCGAACCGATAAATCCCTGCTCCCCGCGCGGCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGAc                                                         <  1:1709710/93‑1 (MQ=255)
                                    gCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGAc                                                         <  1:4630191/93‑1 (MQ=255)
                                    gCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGAc                                                         <  2:4390962/93‑1 (MQ=255)
                                    gCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGAc                                                         <  2:1541817/93‑1 (MQ=255)
                                       aaCCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCgg                                                      >  2:2669970/1‑93 (MQ=255)
                                       aaCCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCgg                                                      <  2:2191252/93‑1 (MQ=255)
                                          cGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGgtgt                                                   <  1:2617512/93‑1 (MQ=255)
                                          cGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGgtgt                                                   <  2:4674559/93‑1 (MQ=255)
                                           gATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTa                                                  <  2:3454618/93‑1 (MQ=255)
                                            aTAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTAt                                                 >  1:1235613/1‑93 (MQ=255)
                                             tAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTAtt                                                <  1:6393098/93‑1 (MQ=255)
                                             tAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTAtt                                                <  2:4741078/93‑1 (MQ=255)
                                              aaaTCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTc                                               >  1:6329719/1‑93 (MQ=255)
                                               aaTCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCa                                              >  1:5671225/1‑93 (MQ=255)
                                               aaTCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCa                                              <  1:2211666/93‑1 (MQ=255)
                                               aaTCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCa                                              >  2:6349644/1‑93 (MQ=255)
                                                aTCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCAc                                             >  2:5543874/1‑93 (MQ=255)
                                                aTCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATCCAc                                             >  2:1722215/1‑93 (MQ=255)
                                                 tCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACg                                            >  2:4819185/1‑93 (MQ=255)
                                                     tGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGaaaa                                        <  1:2965650/93‑1 (MQ=255)
                                                      gCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGaaaaa                                       >  1:4613679/1‑93 (MQ=255)
                                                       cTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAAc                                      >  1:1518608/1‑93 (MQ=255)
                                                        tCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAAcc                                     <  2:3594504/93‑1 (MQ=255)
                                                        tCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAAcc                                     >  1:2695182/1‑93 (MQ=255)
                                                        tCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAAcc                                     >  2:6075151/1‑93 (MQ=255)
                                                         cACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCt                                    <  1:3181937/93‑1 (MQ=255)
                                                         cACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCt                                    >  1:3643374/1‑93 (MQ=255)
                                                         cACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCt                                    <  1:3026670/93‑1 (MQ=255)
                                                           ccGCGCGTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGa                                  <  2:5348125/93‑1 (MQ=255)
                                                            cgcgcgTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGaa                                 >  2:6588917/1‑93 (MQ=255)
                                                            cgcgcgTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGaa                                 <  1:690626/93‑1 (MQ=255)
                                                             gcgcgTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAat                                >  2:2348116/1‑93 (MQ=255)
                                                             gcgcgTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAat                                >  1:6639325/1‑93 (MQ=255)
                                                              cgcgTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAata                               <  2:1247411/93‑1 (MQ=255)
                                                               gcgTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAatat                              >  2:2233325/1‑93 (MQ=255)
                                                               gcgTCGCCGGAATGCCAAACCAGAACGAGCTCGTCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAatat                              <  2:6581738/93‑1 (MQ=255)
                                                                cgTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGCTGTATTCACGAAAAACCTGAATatc                             >  1:4877588/1‑93 (MQ=255)
                                                                cgTCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATatc                             >  2:656798/1‑93 (MQ=255)
                                                                  tCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATatcat                           >  2:3040688/1‑93 (MQ=255)
                                                                  tCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATatcat                           <  1:762168/93‑1 (MQ=255)
                                                                  tCGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATatcat                           >  2:3076760/1‑93 (MQ=255)
                                                                   cGCCGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATatcatc                          <  1:1022767/93‑1 (MQ=255)
                                                                    gCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCg                         >  1:6437344/1‑93 (MQ=255)
                                                                     ccGCAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGa                        <  2:3680648/93‑1 (MQ=255)
                                                                      cGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAg                       <  2:2896847/93‑1 (MQ=255)
                                                                      cGGAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAg                       <  1:3107754/93‑1 (MQ=255)
                                                                       ggAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAga                      >  1:5528397/1‑92 (MQ=255)
                                                                       ggAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGt                      >  1:1345047/1‑93 (MQ=255)
                                                                        gAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTa                     <  2:4559421/93‑1 (MQ=255)
                                                                        gAATGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTa                     <  1:1983492/93‑1 (MQ=255)
                                                                          aTGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGa                   <  2:4922/93‑1 (MQ=255)
                                                                           tGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGaa                  <  2:3895841/93‑1 (MQ=255)
                                                                           tGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGaa                  <  1:5131295/93‑1 (MQ=255)
                                                                           tGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGaa                  >  2:1294404/1‑93 (MQ=255)
                                                                           tGCCAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGaa                  <  2:5947167/93‑1 (MQ=255)
                                                                             ccAAACCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAAtt                <  1:1121906/93‑1 (MQ=255)
                                                                               aaaCCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTc              <  1:5693029/93‑1 (MQ=255)
                                                                               aaaCCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTc              >  2:1678376/1‑93 (MQ=255)
                                                                               aaaCCAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATAATCGAGTAGAATTTc              >  2:5657627/1‑93 (MQ=255)
                                                                                  ccAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGt           <  1:5914091/93‑1 (MQ=255)
                                                                                  ccAGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGt           <  2:1375545/93‑1 (MQ=255)
                                                                                    aGAACGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTaa         <  2:2492502/93‑1 (MQ=255)
                                                                                     gAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTaaa        <  2:1059916/93‑1 (MQ=255)
                                                                                      aaCGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAAt       >  1:3587086/1‑93 (MQ=255)
                                                                                       aCGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAAtt      <  1:4027548/93‑1 (MQ=255)
                                                                                       aCGAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAAtt      <  1:6623977/93‑1 (MQ=255)
                                                                                         gAGCTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTCa    <  1:4257068/93‑1 (MQ=255)
                                                                                            |                                                                                           
CAGGGCGGGTGGCGATTTCCGCGCTTCCCAGACATTGCGAACCGATAAATCCCTGCTCACCGCGCGTCGCCGGAATGCCAAACCAGAACGAGTTCGGCCAGACCAGGCACGACTGACGCAGCGCCAGACCGGTGTATTCACGAAAAACCTGAATATCATCGAGTAGAATTTCCGTAAATTCACC  >  NC_000913/2552830‑2553013

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: