BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,580,830	T→C	S54S (AGT→AGC)	yrhA →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,580,830	0	T	C	88.8%	414.7 / 37.3	143	S54S (AGT→AGC)	yrhA	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (13/3); new base C (99/28); total (112/31)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.36e-01

Only 100 of 145 total aligned reads displayed.

GCTCAAGGAATCATTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGAT  >  NC_000913/3580740‑3580922

gCTCAAGGAATCATTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCAt                                                                                            >  1:606517/1‑93 (MQ=255)

gCTCAAGGAATCATTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCAt                                                                                            <  2:6319689/93‑1 (MQ=255)

gCTCAAGGAATCATTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCAt                                                                                            >  1:6099818/1‑93 (MQ=255)

gCTCAAGGAATCATTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCAt                                                                                            >  1:4566956/1‑93 (MQ=255)

  tCAAGGAATCATTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGTATTc                                                                                          >  2:3521663/1‑93 (MQ=255)

   cAAGGAATCATTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGTATTCt                                                                                         >  2:2056999/1‑93 (MQ=255)

    aaGGAATCATTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCtt                                                                                        <  1:5598151/93‑1 (MQ=255)

    aaGGAATCATTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCtt                                                                                        >  2:5853515/1‑93 (MQ=255)

     aGGAATCATTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCttt                                                                                       <  1:3195325/93‑1 (MQ=255)

      ggAATCATTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCtttt                                                                                      >  1:3122373/1‑93 (MQ=255)

       gAATCATTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCttttt                                                                                     >  1:1147121/1‑93 (MQ=255)

         aTCATTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTaa                                                                                   >  2:4470487/1‑93 (MQ=255)

            aTTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGTATTCTTTTTAAGaa                                                                                >  2:4521994/1‑93 (MQ=255)

            aTTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGaa                                                                                >  1:6240777/1‑93 (MQ=255)

            aTTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGaa                                                                                >  1:5021399/1‑93 (MQ=255)

             tttATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAAt                                                                               >  1:4687728/1‑93 (MQ=255)

                 ttGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGTATTCTTTTTAAGAATCAAc                                                                           <  1:334721/93‑1 (MQ=255)

                  tGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAAcc                                                                          <  2:553140/93‑1 (MQ=255)

                   gAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCt                                                                         >  1:4324435/1‑93 (MQ=255)

                   gAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCt                                                                         >  2:3981656/1‑93 (MQ=255)

                      aGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGAt                                                                      >  1:5461925/1‑93 (MQ=255)

                        tataATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTa                                                                    >  1:3298280/1‑93 (MQ=255)

                        tataATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTa                                                                    >  1:3446642/1‑93 (MQ=255)

                         ataATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTAt                                                                   <  2:3603172/93‑1 (MQ=255)

                          taATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATc                                                                  <  1:22046/93‑1 (MQ=255)

                          taATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATc                                                                  >  2:5063561/1‑93 (MQ=255)

                            aTCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCtt                                                                >  1:1512635/1‑93 (MQ=255)

                            aTCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCtt                                                                >  2:5257508/1‑93 (MQ=255)

                             tCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCtaa                                                               >  2:1794022/1‑91 (MQ=255)

                               cAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACt                                                             <  2:3479636/93‑1 (MQ=255)

                                aaaTAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACtt                                                            >  2:3696838/1‑93 (MQ=255)

                                aaaTAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACtt                                                            >  1:3159465/1‑93 (MQ=255)

                                aaaTAGAATTTAATCCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACtt                                                            >  1:4393876/1‑93 (MQ=255)

                                 aaTAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACttt                                                           >  2:4577494/1‑93 (MQ=255)

                                 aaTAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACttt                                                           >  2:2862116/1‑93 (MQ=255)

                                 aaTAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACttt                                                           >  1:2402346/1‑93 (MQ=255)

                                   tAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACttttt                                                         >  1:2154868/1‑93 (MQ=255)

                                    aGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACtttttt                                                        >  1:1316385/1‑93 (MQ=255)

                                    aGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACtttttt                                                        <  1:5714039/93‑1 (MQ=255)

                                     gAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTa                                                       >  1:3275934/1‑93 (MQ=255)

                                     gAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTa                                                       >  1:2321492/1‑93 (MQ=255)

                                     gAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTa                                                       >  2:5679385/1‑93 (MQ=255)

                                      aaTTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTaa                                                      <  2:2402710/93‑1 (MQ=255)

                                       aTTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAag                                                     <  1:1008328/93‑1 (MQ=255)

                                         ttAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAagag                                                   <  1:1907996/93‑1 (MQ=255)

                                           aattctaattcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCa                                                 <  2:4714455/93‑1 (MQ=255)

                                           aattctaattcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCa                                                 >  2:5198474/1‑93 (MQ=255)

                                           aattctaattcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCa                                                 >  2:1331653/1‑93 (MQ=255)

                                            attctaattcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCaa                                                >  1:4911773/1‑93 (MQ=255)

                                            attctaattcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCaa                                                >  2:3963514/1‑93 (MQ=255)

                                             ttctaattcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAat                                               >  1:557563/1‑93 (MQ=255)

                                             ttctaattcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAat                                               >  2:5766792/1‑93 (MQ=255)

                                             ttctaattcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAat                                               <  2:1490356/93‑1 (MQ=255)

                                             ttctaattcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAat                                               >  2:143187/1‑93 (MQ=255)

                                              tctaattcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAatg                                              >  2:1534813/1‑93 (MQ=255)

                                               ctaattcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAatgg                                             >  2:1213820/1‑93 (MQ=255)

                                                taattcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAatgga                                            >  1:3003491/1‑93 (MQ=255)

                                                 aattcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAatggat                                           >  1:6371963/1‑93 (MQ=255)

                                                 aattcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAatggat                                           >  1:3404195/1‑93 (MQ=255)

                                                  attcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAatggatg                                          >  1:1684812/1‑93 (MQ=255)

                                                    tcAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAAtggatgga                                        >  2:4242295/1‑93 (MQ=255)

                                                      aaCTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGAtt                                      >  2:3423401/1‑93 (MQ=255)

                                                      aaCTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGAtt                                      >  2:4107797/1‑93 (MQ=255)

                                                      aaCTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGAtt                                      >  2:782210/1‑93 (MQ=255)

                                                       aCTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTc                                     >  2:2409894/1‑93 (MQ=255)

                                                       aCTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTc                                     >  1:628152/1‑93 (MQ=255)

                                                       aCTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTc                                     >  1:3673748/1‑93 (MQ=255)

                                                           aTTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAg                                 >  2:1121749/1‑93 (MQ=255)

                                                           aTTGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAg                                 >  1:5857361/1‑93 (MQ=255)

                                                             tGCCTGGAGAAGTTATGTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGtt                               >  2:5390364/1‑93 (MQ=255)

                                                             tGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGtt                               <  1:1249804/93‑1 (MQ=255)

                                                             tGCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGtt                               <  2:6186687/93‑1 (MQ=255)

                                                              gCCTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTa                              <  1:4354755/93‑1 (MQ=255)

                                                               ccTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTaa                             >  1:751636/1‑93 (MQ=255)

                                                               ccTGGAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTaa                             >  2:4721461/1‑93 (MQ=255)

                                                                  ggAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATgg                          >  2:5270295/1‑93 (MQ=255)

                                                                  ggAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATgg                          >  1:4783838/1‑93 (MQ=255)

                                                                  ggAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATgg                          >  1:492428/1‑93 (MQ=255)

                                                                  ggAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATgg                          >  2:6056620/1‑93 (MQ=255)

                                                                  ggAGAAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCCAAGTTAATgg                          >  1:3295918/1‑93 (MQ=255)

                                                                   gagaAGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGa                         >  1:36953/1‑93 (MQ=255)

                                                                      aaGTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTa                      <  2:6146869/93‑1 (MQ=255)

                                                                        gTTATGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACg                    >  1:1039379/1‑93 (MQ=255)

                                                                           aTGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGatt                 >  1:4660996/1‑93 (MQ=255)

                                                                           aTGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGatt                 >  1:6261682/1‑93 (MQ=255)

                                                                            tGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGatta                >  1:4135823/1‑93 (MQ=255)

                                                                            tGTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGatta                >  2:1627107/1‑93 (MQ=255)

                                                                             gTAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGattat               >  2:4340645/1‑93 (MQ=255)

                                                                              tAATGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGattatt              >  1:1509580/1‑93 (MQ=255)

                                                                                aTGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTa            >  2:1922821/1‑93 (MQ=255)

                                                                                aTGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTa            >  1:6599130/1‑93 (MQ=255)

                                                                                aTGAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTa            <  2:5795691/93‑1 (MQ=255)

                                                                                  gAAGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGc          <  1:2076218/93‑1 (MQ=255)

                                                                                   aaGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGcc         <  2:2235569/93‑1 (MQ=255)

                                                                                   aaGTTAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGcc         >  1:1967085/1‑93 (MQ=255)

                                                                                     gTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCctc       >  1:6223948/1‑93 (MQ=255)

                                                                                      ttAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCctct      >  1:1785895/1‑93 (MQ=255)

                                                                                      ttAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCctct      >  2:2864208/1‑93 (MQ=255)

                                                                                       tAGCATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCtctc     >  1:3349382/1‑93 (MQ=255)

                                                                                          tATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGAt  >  2:4358257/1‑93 (MQ=255)

GCTCAAGGAATCATTTATTGAAAGTATAATCCAAATAGAATTTAATTCTAATTCAACTAATTGCCTGGAGAAGTTATGTAATGAAGTTAGTATTCTTTTTAAGAATCAACCTGATTATCTTACTTTTTTAAGAGCAATGGATGGATTCGAAGTTAATGGATTACGATTATTTAGCCTCTCGAT  >  NC_000913/3580740‑3580922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`