BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,951,478	C→T	P116L (CCG→CTG)	ilvD →	dihydroxyacid dehydratase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,951,478	0	C	T	100.0%	944.9 / NA	243	P116L (CCG→CTG)	ilvD	dihydroxyacid dehydratase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (129/114); total (129/114)

Only 100 of 251 total aligned reads displayed.

GCGAACTGATCGCTGATTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCCGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGAAAACCAAACTTTCCG  >  NC_000913/3951388‑3951567

 cgAACTGATCGCTGATTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTggg                                                                                        <  2:3729231/93‑1 (MQ=255)

 cgAACTGATCGCTGATTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTggg                                                                                        <  1:1828697/93‑1 (MQ=255)

 cgAACTGATCGCTGATTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTggg                                                                                        <  1:655793/93‑1 (MQ=255)

  gAACTGATCGCTGATTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTgggg                                                                                       >  2:1535697/1‑93 (MQ=255)

   aaCTGATCGCTGATTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGa                                                                                      >  2:6125261/1‑93 (MQ=255)

   aaCTGATCGCTGATTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGa                                                                                      >  1:3405574/1‑93 (MQ=255)

   aaCTGATCGCTGATTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGa                                                                                      <  2:2328393/93‑1 (MQ=255)

   aaCTGATCGCTGATTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGa                                                                                      <  2:4967405/93‑1 (MQ=255)

    aCTGATCGCTGATTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGAt                                                                                     >  2:4175223/1‑93 (MQ=255)

       gATCGCTGATTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCt                                                                                  >  2:1230896/1‑93 (MQ=255)

        aTCGCTGATTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTg                                                                                 >  1:6094859/1‑93 (MQ=255)

        aTCGCTGATTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTg                                                                                 >  1:2675484/1‑93 (MQ=255)

        aTCGCTGATTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTg                                                                                 >  1:1004017/1‑93 (MQ=255)

              gATTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCt                                                                           <  2:1595376/93‑1 (MQ=255)

               aTTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCtt                                                                          >  2:485662/1‑93 (MQ=255)

                ttCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTc                                                                         >  1:1630938/1‑93 (MQ=255)

                ttCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTc                                                                         >  1:4810406/1‑93 (MQ=255)

                 tCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTcc                                                                        <  2:520790/93‑1 (MQ=255)

                 tCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTcc                                                                        <  2:3469166/93‑1 (MQ=255)

                   cGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCt                                                                      <  1:5257283/93‑1 (MQ=255)

                    gTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTg                                                                     >  2:1145497/1‑93 (MQ=255)

                       gAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTgcgc                                                                  >  1:592127/1‑93 (MQ=255)

                          tataTGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTg                                                               >  2:5705476/1‑93 (MQ=255)

                          tataTGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTg                                                               >  2:2789558/1‑93 (MQ=255)

                           atatGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGa                                                              <  2:1926945/93‑1 (MQ=255)

                           atatGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGa                                                              >  1:6373557/1‑93 (MQ=255)

                            tatGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGaa                                                             >  2:587644/1‑93 (MQ=255)

                              tGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAata                                                           >  1:4361281/1‑93 (MQ=255)

                              tGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAata                                                           <  2:6328891/93‑1 (MQ=255)

                               ggTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAatat                                                          <  2:146155/93‑1 (MQ=255)

                               ggTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAatat                                                          >  2:4261518/1‑93 (MQ=255)

                                  cAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTcc                                                       <  2:1546932/93‑1 (MQ=255)

                                   aaCTCCCACTGCCCCGACGCTATGGTGTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGTTTCCCTGCGCCTGAATATTCCg                                                      <  1:5355814/93‑1 (MQ=255)

                                   aaCGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCg                                                      >  1:3091186/1‑93 (MQ=255)

                                    aCGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCgg                                                     >  2:4652358/1‑93 (MQ=255)

                                    aCGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCgg                                                     >  2:2546332/1‑93 (MQ=255)

                                    aCGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCgg                                                     >  1:6225754/1‑93 (MQ=255)

                                    aCGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCgg                                                     >  2:4065915/1‑93 (MQ=255)

                                    aCGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCgg                                                     <  1:5052413/93‑1 (MQ=255)

                                       cccACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGa                                                  >  1:3493025/1‑93 (MQ=255)

                                       cccACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGa                                                  >  2:4911211/1‑93 (MQ=255)

                                       cccACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGa                                                  >  2:2083108/1‑93 (MQ=255)

                                        ccACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGAt                                                 >  2:607580/1‑93 (MQ=255)

                                         cACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATc                                                <  1:2989773/93‑1 (MQ=255)

                                          aCTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCt                                               >  1:4320070/1‑93 (MQ=255)

                                           cTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCtt                                              <  1:1724886/93‑1 (MQ=255)

                                           cTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCtt                                              >  2:6223781/1‑93 (MQ=255)

                                           cTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCtt                                              >  1:2162430/1‑93 (MQ=255)

                                              cgcCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGt                                           <  2:5600574/93‑1 (MQ=255)

                                                 cGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTc                                        >  1:14298/1‑93 (MQ=255)

                                                  gACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTcc                                       >  1:6148639/1‑93 (MQ=255)

                                                  gACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTcc                                       >  1:5554897/1‑93 (MQ=255)

                                                  gACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTcc                                       >  1:4587187/1‑93 (MQ=255)

                                                  gACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTcc                                       <  2:649145/93‑1 (MQ=255)

                                                   aCGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCcg                                      >  1:4966875/1‑93 (MQ=255)

                                                   aCGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCcg                                      <  1:4003130/93‑1 (MQ=255)

                                                   aCGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCcg                                      >  1:197990/1‑93 (MQ=255)

                                                   aCGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCcg                                      <  2:3357602/93‑1 (MQ=255)

                                                    cGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCcgg                                     >  1:4471506/1‑93 (MQ=255)

                                                    cGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCcgg                                     <  2:3606288/93‑1 (MQ=255)

                                                    cGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCcgg                                     <  1:5226624/93‑1 (MQ=255)

                                                     gCCATGGTCTGCAGCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCcggc                                    <  1:2273295/93‑1 (MQ=255)

                                                      ccATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCcggcg                                   >  1:1328495/1‑93 (MQ=255)

                                                      ccATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCcggcg                                   >  1:3671743/1‑93 (MQ=255)

                                                      ccATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCcggcg                                   <  2:6439100/93‑1 (MQ=255)

                                                      ccATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCcggcg                                   >  1:2460002/1‑93 (MQ=255)

                                                       cATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCcggcgg                                  >  2:4472941/1‑93 (MQ=255)

                                                       cATGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATGCCGGTGATCTTTGTTTCcggcgg                                  >  2:3269150/1‑93 (MQ=255)

                                                        aTGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCggcggc                                 >  2:4724459/1‑93 (MQ=255)

                                                         tGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGcc                                >  1:1181713/1‑93 (MQ=255)

                                                         tGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGcc                                <  2:5965328/93‑1 (MQ=255)

                                                         tGGTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGcc                                <  2:1057070/93‑1 (MQ=255)

                                                           gTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCg                              >  2:35073/1‑93 (MQ=255)

                                                           gTCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCg                              <  1:4611195/93‑1 (MQ=255)

                                                            tCTGCATCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGa                             >  1:6438211/1‑93 (MQ=255)

                                                                 aTCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAg                        <  2:283200/93‑1 (MQ=255)

                                                                 aTCTCTAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAg                        <  2:199359/93‑1 (MQ=255)

                                                                   ctctAACTGCGACAAAATCGCCCTGGGGATGCTGATGGCTTCGCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGc                      <  2:1699165/93‑1 (MQ=255)

                                                                   ctctAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGc                      <  1:5802087/93‑1 (MQ=255)

                                                                    tctAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGcc                     >  2:5383869/1‑93 (MQ=255)

                                                                    tctAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGcc                     >  2:2655890/1‑93 (MQ=255)

                                                                    tctAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGcc                     >  1:5630898/1‑93 (MQ=255)

                                                                     ctAACTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCg                    <  1:3885224/93‑1 (MQ=255)

                                                                        aCTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCTGCGGCCCGATGGAGGCCGGGa                 >  2:851470/1‑93 (MQ=255)

                                                                        aCTGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGa                 >  1:3967223/1‑93 (MQ=255)

                                                                          tGCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGaaa               >  2:1861666/1‑93 (MQ=255)

                                                                          cgCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGaaa               <  1:5131957/92‑1 (MQ=255)

                                                                           gCGACAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGaaaa              >  1:875839/1‑93 (MQ=255)

                                                                              aCAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGAAAACCa           >  2:3092223/1‑93 (MQ=255)

                                                                               cAAAATCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTAAATATTCCGGTGATCTTTGTTTCCGGCGTCCCGATGGAGGCCGGCAAAACCaa          <  1:6290865/93‑1 (MQ=255)

                                                                                aaaaTCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGAAAACCaaa         <  1:5857108/93‑1 (MQ=255)

                                                                                 aaaTCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGAAAACCAAAc        <  2:2883243/93‑1 (MQ=255)

                                                                                  aaTCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGAAAACCAAACt       <  2:3065314/93‑1 (MQ=255)

                                                                                   accACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGAAAACCAAACtt      <  1:1383358/91‑1 (MQ=255)

                                                                                    tCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGAAAACCAAACttt     <  1:2546332/93‑1 (MQ=255)

                                                                                    tCACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGAAAACCAAACttt     <  1:2059695/93‑1 (MQ=255)

                                                                                     cACCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGAAAACCAAACTTTc    <  2:318033/93‑1 (MQ=255)

                                                                                      aCCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGAAAACCAAACTTTcc   <  1:3604671/93‑1 (MQ=255)

                                                                                      aCCCTGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGAAAACCAAACTTTcc   >  1:3272959/1‑93 (MQ=255)

                                                                                       ccctGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGAAAACCAAACTTTCCg  >  2:2735105/1‑93 (MQ=255)

GCGAACTGATCGCTGATTCCGTTGAGTATATGGTCAACGCCCACTGCGCCGACGCCATGGTCTGCATCTCTAACTGCGACAAAATCACCCCGGGGATGCTGATGGCTTCCCTGCGCCTGAATATTCCGGTGATCTTTGTTTCCGGCGGCCCGATGGAGGCCGGGAAAACCAAACTTTCCG  >  NC_000913/3951388‑3951567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`