BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,177,426	T→C	intergenic (+265/‑148)	rplA → / → rplJ	50S ribosomal subunit protein L1/50S ribosomal subunit protein L10

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,177,426	0	T	C	100.0%	1105.3 / NA	297	intergenic (+265/‑148)	rplA/rplJ	50S ribosomal subunit protein L1/50S ribosomal subunit protein L10
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (147/150); total (147/150)

Only 100 of 309 total aligned reads displayed.

GAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAATTAAGACGCTCTCTCCGTT  >  NC_000913/4177336‑4177515

gAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAAccc                                                                                         <  1:409057/93‑1 (MQ=255)

 aaTAGGGACGGATAGAAAAAATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAAcccc                                                                                        <  2:510988/93‑1 (MQ=255)

 aaTAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAAcccc                                                                                        <  2:3454263/93‑1 (MQ=255)

  aTAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACcccc                                                                                       <  2:1121013/93‑1 (MQ=255)

   tAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCt                                                                                      >  1:5127398/1‑93 (MQ=255)

   tAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCt                                                                                      >  1:4182069/1‑93 (MQ=255)

     gCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGc                                                                                    >  2:913879/1‑93 (MQ=255)

     gCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGc                                                                                    <  1:967996/93‑1 (MQ=255)

      cGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCg                                                                                   >  2:5434581/1‑93 (MQ=255)

      cGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCg                                                                                   >  2:2762029/1‑93 (MQ=255)

       gACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGt                                                                                  <  1:628781/93‑1 (MQ=255)

       gACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGt                                                                                  >  2:639707/1‑93 (MQ=255)

       gACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGt                                                                                  <  1:4780168/93‑1 (MQ=255)

          ggATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGa                                                                               >  1:1021547/1‑93 (MQ=255)

           gATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGAc                                                                              <  2:2267121/93‑1 (MQ=255)

           gATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGAc                                                                              >  2:2176845/1‑93 (MQ=255)

           gATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGAc                                                                              <  2:1641202/93‑1 (MQ=255)

            aTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACg                                                                             >  1:4585875/1‑93 (MQ=255)

            aTAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACg                                                                             >  2:5607920/1‑93 (MQ=255)

             tAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACgg                                                                            <  2:4640920/93‑1 (MQ=255)

              aGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGt                                                                           <  2:1402229/93‑1 (MQ=255)

               gAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTg                                                                          >  1:1988378/1‑93 (MQ=255)

               gAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTg                                                                          >  2:1331860/1‑93 (MQ=255)

                aaaaGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGa                                                                         <  1:3540729/93‑1 (MQ=255)

                aaaaGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGa                                                                         <  2:4501905/93‑1 (MQ=255)

                  aaGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACa                                                                       >  2:1731123/1‑93 (MQ=255)

                   aGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAg                                                                      >  1:634787/1‑93 (MQ=255)

                   aGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAg                                                                      <  2:2108744/93‑1 (MQ=255)

                     aTTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGaa                                                                    <  1:2302416/93‑1 (MQ=255)

                     aTTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGaa                                                                    <  2:3376020/93‑1 (MQ=255)

                     aTTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGaa                                                                    <  1:2622791/93‑1 (MQ=255)

                      tttGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAAc                                                                   >  1:239760/1‑93 (MQ=255)

                      tttCTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAAc                                                                   <  1:6399473/93‑1 (MQ=255)

                        tGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGc                                                                 <  1:1575075/93‑1 (MQ=255)

                        tGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGc                                                                 <  2:6087919/93‑1 (MQ=255)

                         gTTCGTTGGAGCCTGGCCTCTCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCt                                                                >  1:6494728/1‑93 (MQ=255)

                         gTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCt                                                                >  1:1188141/1‑93 (MQ=255)

                         gTTCGTTGGAGCCTGGCCTATCCAGCCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCt                                                                <  1:3343789/93‑1 (MQ=255)

                          ttCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTa                                                               >  2:3907895/1‑93 (MQ=255)

                          ttCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTa                                                               >  1:2972456/1‑93 (MQ=255)

                           tCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTaa                                                              <  1:1307766/93‑1 (MQ=255)

                           tCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTaa                                                              <  1:5560211/93‑1 (MQ=255)

                            cGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAg                                                             >  1:2812520/1‑93 (MQ=255)

                             gTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGa                                                            >  2:5354832/1‑93 (MQ=255)

                               tGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGatt                                                          <  1:3783601/93‑1 (MQ=255)

                                 gAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGattat                                                        >  2:58627/1‑93 (MQ=255)

                                 gAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGattat                                                        >  2:2244283/1‑93 (MQ=255)

                                 gAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGattat                                                        >  2:1206136/1‑93 (MQ=255)

                                  aGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGattatt                                                       >  1:5211008/1‑93 (MQ=255)

                                    ccTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCt                                                     <  2:2852819/93‑1 (MQ=255)

                                    ccTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCt                                                     >  2:4400756/1‑93 (MQ=255)

                                    ccTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCt                                                     <  1:3702003/93‑1 (MQ=255)

                                      tGGCCTATCCAGGCGTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTACCCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCttt                                                   <  1:4328277/93‑1 (MQ=255)

                                      tGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTCAGATTATTCttt                                                   >  1:2882986/1‑93 (MQ=255)

                                      tGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCttt                                                   >  2:2635574/1‑93 (MQ=255)

                                       ggCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCtttt                                                  <  1:1474729/93‑1 (MQ=255)

                                       ggCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCtttt                                                  <  1:2577404/93‑1 (MQ=255)

                                        gCCTATCCTGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTta                                                 <  2:741760/93‑1 (MQ=255)

                                        gCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTta                                                 <  1:1882823/93‑1 (MQ=255)

                                          cTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACTCTAAGAGTATTCTTTtata                                               >  1:3299525/1‑93 (MQ=255)

                                           tATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTatat                                              >  1:6596735/1‑93 (MQ=255)

                                            aTCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATAtt                                             <  1:246242/93‑1 (MQ=255)

                                              ccAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCt                                           <  1:6114648/93‑1 (MQ=255)

                                               cAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTg                                          <  2:4172736/93‑1 (MQ=255)

                                               cAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTg                                          <  1:1517315/93‑1 (MQ=255)

                                                  gCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCt                                       <  2:4082991/93‑1 (MQ=255)

                                                   ccTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCtt                                      >  2:233875/1‑93 (MQ=255)

                                                    cTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTg                                     >  2:3194730/1‑93 (MQ=255)

                                                     tCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGt                                    <  1:3179900/93‑1 (MQ=255)

                                                        gTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTc                                 >  1:1780521/1‑93 (MQ=255)

                                                         tCGAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCt                                >  1:578343/1‑93 (MQ=255)

                                                           gAAGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGc                              <  1:4430978/93‑1 (MQ=255)

                                                            aaGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCt                             >  1:5046055/1‑93 (MQ=255)

                                                             aGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTTGCTTGTTTTTtctc                            >  1:4682220/1‑93 (MQ=255)

                                                             aGACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTc                            >  2:1441882/1‑93 (MQ=255)

                                                              gACCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCa                           >  2:1980625/1‑93 (MQ=255)

                                                               aCCGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCAc                          >  1:5483910/1‑93 (MQ=255)

                                                                ccGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCAcc                         <  2:1577975/93‑1 (MQ=255)

                                                                ccGCAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCAcc                         >  2:5527904/1‑93 (MQ=255)

                                                                   cAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTa                      >  1:4725389/1‑93 (MQ=255)

                                                                   cAGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGGTTCTGCTCACCGTa                      >  2:5004142/1‑93 (MQ=255)

                                                                    aGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTaa                     >  2:4312216/1‑93 (MQ=255)

                                                                    aGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTaa                     >  2:310015/1‑93 (MQ=255)

                                                                    aGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTaa                     >  2:4808644/1‑93 (MQ=255)

                                                                    aGGAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTaa                     >  1:4533604/1‑93 (MQ=255)

                                                                     ggAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAAt                    >  1:3129257/1‑93 (MQ=255)

                                                                      gAGTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAAtt                   <  2:6277430/93‑1 (MQ=255)

                                                                        gTTTCGCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAATTaa                 >  2:2565221/1‑93 (MQ=255)

                                                                             gCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAATTAAGACGc            >  2:3616373/1‑93 (MQ=255)

                                                                             gCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAATTAAGACGc            <  2:1903863/93‑1 (MQ=255)

                                                                             gCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAATTAAGACGc            <  2:5297511/93‑1 (MQ=255)

                                                                             gCAAGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAATTAAGACGc            <  1:6187861/93‑1 (MQ=255)

                                                                               aaGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAATTAAGACGctc          <  2:3337168/93‑1 (MQ=255)

                                                                                aGAAACTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAATTAAGACGctct         >  1:3951676/1‑93 (MQ=255)

                                                                                  aaaCTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAATTAAGACGctctct       <  2:2901667/93‑1 (MQ=255)

                                                                                   aaCTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAATTAAGACGCtctctc      <  2:5205877/93‑1 (MQ=255)

                                                                                    aCTTAACCCCCTGGCTAGACGGTGACAGAACGCTAAGGTTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAATTAAGACGCTCTCTcc     <  2:1773861/93‑1 (MQ=255)

                                                                                    aCTTAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAATTAAGACGCTCTCTcc     >  2:4960337/1‑93 (MQ=255)

                                                                                      ttAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAATTAAGACGCTCTCTCCGt   <  1:5442897/93‑1 (MQ=255)

                                                                                       tAACCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAATTAAGACGCTCTCTCCGtt  >  2:6481319/1‑93 (MQ=255)

GAATAGCGACGGATAGAAAAGATTTGTTCGTTGGAGCCTGGCCTATCCAGGCCTCCGTCGAAGACCGCAGGAGTTTCGCAAGAAACTTAATCCCCTGCGTAGACGGTGACAGAACGCTAAGATTATTCTTTTATATTCTGGCTTGTTTCTGCTCACCGTAATTAAGACGCTCTCTCCGTT  >  NC_000913/4177336‑4177515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`