mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 121 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 580,431 | 0 | T | A | 70.6% | 8.1 / 10.5 | 17 | I125I (ATT→ATA) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 580,498 | 0 | G | A | 66.7% | 35.3 / 36.7 | 45 | V148I (GTT→ATT) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 1,634,019 | 0 | T | C | 64.1% | 32.2 / 38.9 | 39 | I125V (ATT→GTT) | nohA | NohA |
| * | NC_000913 | 3,192,873 | 0 | T | C | 59.7% | 275.0 / inf | 463 | intergenic (+332/+88) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 1,634,023 | 0 | A | T | 59.5% | 45.8 / 57.2 | 43 | G123G (GGT→GGA) | nohA | NohA |
| * | NC_000913 | 3,192,891 | 0 | C | T | 59.2% | 389.6 / inf | 457 | intergenic (+350/+70) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 3,192,907 | 0 | A | T | 58.6% | 339.6 / inf | 444 | intergenic (+366/+54) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 3,192,905 | 0 | C | A | 56.8% | 20.0 / inf | 431 | intergenic (+364/+56) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 580,422 | 0 | A | C | 53.1% | 58.0 / 61.1 | 50 | A122A (GCA→GCC) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 580,419 | 0 | C | G | 51.5% | 91.2 / 111.5 | 66 | I121M (ATC→ATG) | nohB | bacteriophage DNA packaging protein |
| * | NC_000913 | 1,634,026 | 0 | T | G | 51.0% | 66.5 / 67.0 | 49 | A122A (GCA→GCC) | nohA | NohA |
| * | NC_000913 | 1,949,356 | 0 | T | C | 50.9% | 10.7 / inf | 405 | S178S (AGT→AGC) | yecD | hypothetical protein |
| * | NC_000913 | 1,949,411 | 0 | A | C | 50.6% | 208.9 / inf | 403 | N197H (AAC→CAC) | yecD | hypothetical protein |
| * | NC_000913 | 3,192,647 | 0 | G | C | 50.5% | 6.2 / inf | 474 | intergenic (+106/+314) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 1,949,410 | 0 | C | T | 50.0% | 73.7 / inf | 407 | L196L (CTC→CTT) | yecD | hypothetical protein |
| * | NC_000913 | 1,949,436 | 0 | A | G | 49.5% | 46.3 / inf | 368 | L6L (CTA→CTG) | yecE | hypothetical protein |
| * | NC_000913 | 1,949,344 | 0 | G | A | 49.4% | 30.1 / inf | 356 | Q174Q (CAG→CAA) | yecD | hypothetical protein |
| * | NC_000913 | 1,949,359 | 0 | C | T | 49.4% | 45.3 / inf | 403 | I179I (ATC→ATT) | yecD | hypothetical protein |
| * | NC_000913 | 3,192,665 | 0 | C | T | 49.4% | 59.1 / inf | 469 | intergenic (+124/+296) | b3051/b3052 | putative membrane protein/putative kinase |
| * | NC_000913 | 1,949,362 | 0 | C | T | 48.9% | 17.1 / inf | 399 | N180N (AAC→AAT) | yecD | hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207013 = | 145 (0.580) | 94 (0.450) | 70/152 | 3.5 | 43.2% | coding (290/630 nt) | ycfK | hypothetical protein |
| ? | NC_000913 | 1208842 = | 128 (0.620) | coding (40/540 nt) | b1157 | putative tail fiber protein | |||||
| * | ? | NC_000913 | = 1207028 | 146 (0.580) | 84 (0.400) | 61/152 | 5.0 | 41.3% | coding (305/630 nt) | ycfK | hypothetical protein |
| ? | NC_000913 | = 1208825 | 118 (0.570) | coding (57/540 nt) | b1157 | putative tail fiber protein | |||||
| * | ? | NC_000913 | 1285931 = | 243 (0.960) | 173 (0.890) | 51/142 | 6.1 | 49.9% | intergenic (+182/‑1) | narI/b1228 | nitrate reductase 1/hypothetical protein |
| ? | NC_000913 | = 1286464 | 160 (0.830) | intergenic (‑53/+3) | tpr/tyrV | protamine‑like protein/tRNA‑Tyr | |||||
| * | ? | NC_000913 | = 4008398 | 64 (0.260) | 62 (0.260) +AAGA |
27/172 | 16.2 | 50.0% | coding (481/516 nt) | b4555 | hypothetical protein |
| ? | NC_000913 | 4008399 = | 64 (0.250) | coding (482/516 nt) | b4555 | hypothetical protein | |||||
| * | ? | NC_000913 | 4540250 = | 217 (0.860) | 19 (0.080) | 18/166 | 19.6 | 7.9% | intergenic (+49/‑433) | fimE/fimA | FimE/major type 1 subunit fimbrin |
| ? | NC_000913 | 4540564 = | 245 (1.080) | intergenic (+363/‑119) | fimE/fimA | FimE/major type 1 subunit fimbrin | |||||
| * | ? | NC_000913 | = 1208841 | 168 (0.670) | 17 (0.080) | 13/154 | 21.2 | 8.8% | coding (41/540 nt) | b1157 | putative tail fiber protein |
| ? | NC_000913 | 2469917 = | 211 (1.000) | coding (166/519 nt) | yfdL | putative RNA polymerase beta | |||||
| * | ? | NC_000913 | = 4540258 | 209 (0.830) | 11 (0.050) | 11/166 | 23.5 | 4.8% | intergenic (+57/‑425) | fimE/fimA | FimE/major type 1 subunit fimbrin |
| ? | NC_000913 | = 4540554 | 244 (1.070) | intergenic (+353/‑129) | fimE/fimA | FimE/major type 1 subunit fimbrin | |||||
| * | ? | NC_000913 | 1409923 = | 281 (1.120) | 5 (0.030) | 5/132 | 24.6 | 2.5% | coding (50/936 nt) | ydaO | hypothetical protein |
| ? | NC_000913 | = 1432982 | 193 (1.070) | intergenic (‑701/+227) | ynaE/ynaF | hypothetical protein/putative filament protein | |||||
| * | ? | NC_000913 | = 2782937 | 261 (1.040) | 3 (0.010) | 3/172 | 30.5 | 1.2% | coding (95/483 nt) | b2650 | hypothetical protein |
| ? | NC_000913 | = 2782938 | 243 (1.030) | coding (94/483 nt) | b2650 | hypothetical protein | |||||
| * | ? | NC_000913 | = 1821320 | 263 (1.040) | 3 (0.010) | 3/174 | 30.7 | 1.2% | intergenic (+11/‑219) | nadE/b1741 | NAD synthetase/putative excinuclease subunit |
| ? | NC_000913 | = 1821328 | 261 (1.100) | intergenic (+19/‑211) | nadE/b1741 | NAD synthetase/putative excinuclease subunit | |||||