BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,253,742	Δ1 bp	coding (551/552 nt)	yhaNM ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,253,741	0	G	.	99.7%	1278.5 / ‑3.7	284	coding (552/552 nt)	yhaNM	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (1/0); new base . (148/135); total (149/135)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.27e-01

Only 100 of 323 total aligned reads displayed.

ATAACGCACAATTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCGA  >  NC_000913/3253649‑3253829

aTAACGCACAATTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCg                                                                                          >  2:674507/1‑93 (MQ=255)

 tAACGCACAATTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCgt                                                                                         <  1:1047479/93‑2 (MQ=255)

 tAACGCACAATTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCgt                                                                                         >  2:7054686/1‑92 (MQ=255)

 tAACGCACAATTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCgt                                                                                         >  2:4701009/1‑92 (MQ=255)

 tAACGCACAATTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCgt                                                                                         <  1:9343235/93‑2 (MQ=255)

  aaCGCACAATTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCgtt                                                                                        <  2:1076887/93‑3 (MQ=255)

  aaCGCACAATTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCgtt                                                                                        >  2:6169692/1‑91 (MQ=255)

   aCGCACAATTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCgttc                                                                                       <  1:1598205/93‑4 (MQ=255)

     gCACAATTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTg                                                                                    >  1:2339843/1‑93 (MQ=255)

     gCACAATTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTg                                                                                    <  1:7109433/93‑1 (MQ=255)

     gCACAATTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTg                                                                                    <  1:3822428/93‑1 (MQ=255)

         aaTTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGaaa                                                                                <  2:3917960/93‑1 (MQ=255)

          aTTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAg                                                                               <  2:4945411/93‑1 (MQ=255)

          aTTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAg                                                                               >  2:5131198/1‑93 (MQ=255)

          aTTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAg                                                                               >  1:3238294/1‑93 (MQ=255)

           tttAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGc                                                                              <  2:876569/93‑1 (MQ=255)

           tttAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGc                                                                              >  2:207304/1‑93 (MQ=255)

           tttAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGc                                                                              >  2:7745643/1‑93 (MQ=255)

            ttAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GATCTGGCAAGCa                                                                             >  1:400002/1‑93 (MQ=255)

             tAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCAc                                                                            <  1:6244591/93‑1 (MQ=255)

              aGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCAcc                                                                           >  2:3081026/1‑93 (MQ=255)

                cTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGt                                                                         <  1:2940816/93‑1 (MQ=255)

                 ttCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTc                                                                        <  2:4094577/93‑1 (MQ=255)

                      ggAATCGAGAATAAAGCGGATCGCTGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCgg                                                                   <  2:2922419/93‑1 (MQ=255)

                       gAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGga                                                                  <  2:2397879/93‑1 (MQ=255)

                        aaTCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGgag                                                                 >  1:888736/1‑93 (MQ=255)

                         aTCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGGCAGCGTC‑GTTCTTGAAAGCACCGTCAGCGgaga                                                                >  2:8636844/1‑93 (MQ=255)

                         aTCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGgaga                                                                >  1:6570738/1‑93 (MQ=255)

                         aTCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGgaga                                                                <  2:7314770/93‑1 (MQ=255)

                         aTCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGgaga                                                                >  2:4367437/1‑93 (MQ=255)

                          tCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGAc                                                               >  1:1614431/1‑93 (MQ=255)

                          tCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGAc                                                               >  1:5649975/1‑93 (MQ=255)

                            gagaATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGActc                                                             >  2:1975054/1‑93 (MQ=255)

                            gagaATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGActc                                                             >  2:8575170/1‑93 (MQ=255)

                             agaATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGG‑TCTGGAAAGCACCGTCAGCGGAGActct                                                            >  1:4543279/1‑93 (MQ=255)

                               aaTAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTg                                                          <  2:772283/93‑1 (MQ=255)

                                aTAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGc                                                         >  1:8303771/1‑93 (MQ=255)

                                 tAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCt                                                        >  2:181223/1‑93 (MQ=255)

                                 tAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCt                                                        <  2:3599118/93‑1 (MQ=255)

                                 tAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCt                                                        <  1:3516239/93‑1 (MQ=255)

                                 tAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCt                                                        <  1:589473/93‑1 (MQ=255)

                                  aaaGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTc                                                       >  1:8137524/1‑93 (MQ=255)

                                  aaaGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTc                                                       <  2:2746804/93‑1 (MQ=255)

                                        gATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGccccc                                                 <  2:7826731/93‑3 (MQ=255)

                                           cgccgcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGc                                              <  2:9162068/93‑1 (MQ=255)

                                           cgccgcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGc                                              <  1:379642/93‑1 (MQ=255)

                                           cgccgcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGc                                              >  1:7601714/1‑93 (MQ=255)

                                             ccgcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCca                                            <  2:2930012/93‑1 (MQ=255)

                                               gcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCcaca                                          >  2:6485437/1‑93 (MQ=255)

                                               gcAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCcaca                                          >  1:2025493/1‑93 (MQ=255)

                                               gcAAACGGAACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCcaca                                          <  1:9950809/93‑1 (MQ=255)

                                                 aaaCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCcacaca                                        >  2:5921280/1‑93 (MQ=255)

                                                 aaaCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCcacaca                                        <  2:7582559/93‑1 (MQ=255)

                                                 aaaCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCcacaca                                        <  1:5402545/93‑1 (MQ=255)

                                                  aaCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCacacac                                       >  1:6109683/1‑93 (MQ=255)

                                                  aaCGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCG‑CCGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGATATCCCCCTGTCgcacac                                       >  2:4166290/1‑93 (MQ=255)

                                                     gggACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGcc                                    >  1:6783942/1‑93 (MQ=255)

                                                      ggACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCct                                   <  1:1494902/93‑1 (MQ=255)

                                                      ggACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCct                                   >  1:7479321/1‑93 (MQ=255)

                                                       gACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCctg                                  <  1:8586308/93‑1 (MQ=255)

                                                       gACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCctg                                  >  2:1928285/1‑93 (MQ=255)

                                                       gACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCctg                                  >  2:1329424/1‑93 (MQ=255)

                                                       gACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCctg                                  >  2:1246664/1‑93 (MQ=255)

                                                        gcTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCctgc                                 <  2:6012448/92‑1 (MQ=255)

                                                        aCTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCctgc                                 <  1:10005629/93‑1 (MQ=255)

                                                         cTTCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCctgct                                <  1:4418219/93‑1 (MQ=255)

                                                          ttCATTGACGAACTTCAGGATCTCAGCCACCGTC‑GTTCTGGAAAGCACCGTCACCGGAGACTCTTGCTCGCCCCCTGCCACACACCCctgctg                               >  1:6906310/1‑93 (MQ=255)

                                                           tCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTgg                              <  2:3823833/93‑1 (MQ=255)

                                                           tCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTgg                              >  1:7245477/1‑93 (MQ=255)

                                                           tCATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTgg                              <  2:7412908/93‑1 (MQ=255)

                                                            cATTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTggg                             >  2:3375883/1‑93 (MQ=255)

                                                             aTTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGt                            >  2:9369172/1‑93 (MQ=255)

                                                             aTTGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGt                            >  2:1550316/1‑93 (MQ=255)

                                                              ttGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTgggga                           >  2:715279/1‑91 (MQ=255)

                                                              ttGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTa                           <  1:338960/93‑1 (MQ=255)

                                                              ttGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTa                           >  1:9859776/1‑93 (MQ=255)

                                                               tGACGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTaa                          >  1:5193158/1‑93 (MQ=255)

                                                                  cGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTaaaac                       >  1:2160413/1‑91 (MQ=255)

                                                                  cGAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAaca                       >  1:7854399/1‑93 (MQ=255)

                                                                   gAACTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAacac                      <  1:8408671/93‑1 (MQ=255)

                                                                    aaCTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAacacc                     >  2:6118994/1‑93 (MQ=255)

                                                                    aaCTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAacacc                     <  1:6041724/93‑1 (MQ=255)

                                                                     aCTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAacacca                    >  1:9068989/1‑93 (MQ=255)

                                                                     aCTTCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAacacca                    >  1:6703185/1‑93 (MQ=255)

                                                                       ttCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAacaccaca                  <  1:4973244/93‑1 (MQ=255)

                                                                        tCAGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAacaccacac                 >  1:1079470/1‑93 (MQ=255)

                                                                          aGGATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAAcaccacacca               >  2:9537664/1‑93 (MQ=255)

                                                                           ggATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAACACCACACCAt              <  2:5841496/93‑1 (MQ=255)

                                                                           ggATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAACACCACACCAt              >  2:5726019/1‑93 (MQ=255)

                                                                            gATCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAACACCACACCATc             >  1:4191757/1‑93 (MQ=255)

                                                                             aTCTCAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAACACCACACCATCg            <  1:471582/93‑1 (MQ=255)

                                                                              tctcAGCCAGCGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGt           >  2:8383825/1‑93 (MQ=255)

                                                                                 cagccagcGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCg        <  2:8040002/93‑1 (MQ=255)

                                                                                 cagccagcGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCg        >  2:9217285/1‑93 (MQ=255)

                                                                                   gccagcGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGtc      <  1:9273964/93‑1 (MQ=255)

                                                                                     cagcGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGtctc    >  1:5109106/1‑93 (MQ=255)

                                                                                      agcGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCg   >  2:6368813/1‑93 (MQ=255)

                                                                                      agcGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCg   >  1:2564824/1‑93 (MQ=255)

                                                                                       gcGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCGa  >  1:2520567/1‑93 (MQ=255)

                                                                                       gcGTC‑GTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCCCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCGa  >  2:2142083/1‑93 (MQ=255)

ATAACGCACAATTTAGCTTCGCGGAATCGAGAATAAAGCGGATCGCCGCAAACGGGACTTCATTGACGAACTTCAGGATCTCAGCCAGCGTCGGTTCTGGAAAGCACCGTCAGCGGAGACTCTTGCTCGCCCTCTGCCACACACGCCTGCTGGGTAAACACCACACCATCGTGCGTCTCGA  >  NC_000913/3253649‑3253829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`