| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,957,092 | +CC | intergenic (+26/+58) | ilvC → / ← ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,957,091 | 1 | . | C | 93.7% | 471.4 / 29.8 | 189 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/12); new base C (10/167); total (10/179) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
| * | NC_000913 | 3,957,091 | 2 | . | C | 93.7% | 470.8 / 29.8 | 189 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (0/12); new base C (10/167); total (10/179) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 230 total aligned reads displayed.
TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3956999‑3957173 || ttGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑a < 1:8599176/93‑1 (MQ=255) gAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑cc < 1:4075361/93‑2 (MQ=255) gAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑cc < 2:8340637/93‑2 (MQ=255) aGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑ccc < 2:5711287/93‑3 (MQ=255) gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑ccct < 2:816987/93‑1 (MQ=255) cAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctc < 2:3477725/93‑1 (MQ=255) aggtaggtAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctct < 2:1708098/93‑2 (MQ=255) ggtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctctc < 1:6459310/93‑3 (MQ=255) gtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑C‑‑Ccctctcc > 1:8692664/1‑90 (MQ=255) gtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctctcc < 1:6701713/93‑4 (MQ=255) gtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccctctcc < 2:6213163/93‑4 (MQ=255) agtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCcac < 1:5209928/92‑1 (MQ=38) gtaAGAAACTGCGCGGCTATATTACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCcaca < 2:8265546/93‑1 (MQ=37) gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCcaca < 2:333625/93‑1 (MQ=38) taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACag < 1:5192420/93‑1 (MQ=37) aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACaggg < 2:278000/93‑1 (MQ=37) aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACaggg < 1:8860898/93‑1 (MQ=37) aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACaggg < 2:9337670/93‑1 (MQ=37) gAAACTGCGCGGCTATATGCCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACaggga < 2:4496475/93‑1 (MQ=37) gAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑ACCCTCTCCCCCagggg > 2:1562846/1‑92 (MQ=37) aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggaga‑g < 2:2146636/93‑1 (MQ=37) cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggaga‑gg < 1:9120349/93‑1 (MQ=25) tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACagggaga‑ggg < 2:4134173/93‑1 (MQ=25) ggCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAAGGTGA‑GGGAGgaa > 2:10033437/1‑93 (MQ=25) gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGaaaa < 2:4333432/93‑1 (MQ=21) atatGACAGATATGAAACGTATTGCTTTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAacac < 1:5775982/93‑1 (MQ=21) tatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCCCCCCCCG‑‑ACCCCCTCCCCCAGGGGGG‑GGGGGAAAacacc > 2:6973202/1‑92 (MQ=21) tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑a < 1:5587383/93‑1 (MQ=21) tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑a < 1:8158037/93‑1 (MQ=21) taCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑aa < 1:8483600/92‑1 (MQ=21) gACAGATATGAAACGTATTGCTTTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑aa < 1:8610907/93‑1 (MQ=21) gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑aa < 2:9618785/93‑1 (MQ=21) aGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCCCAGGGAGA‑GGGAGAAAACTCT‑C‑AA‑ggc < 1:2902511/93‑3 (MQ=21) gATGTGAAACGTATTGCTGTTGCGGTTTAAGTGCGCGCGTATCCCCTCCCCCCGTCC‑‑CTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AA‑ggcc < 2:7245091/93‑4 (MQ=18) gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AA‑ggcc < 2:9719709/93‑4 (MQ=21) gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AA‑ggcc < 1:28121/93‑4 (MQ=21) gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑AACCTCTCCCACCAGGAGA‑GGGAGAAAAAACT‑C‑aaagac > 1:9967462/1‑89 (MQ=21) atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCCCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AA‑ggcct > 2:7989286/1‑89 (MQ=21) atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTtc < 1:7966471/93‑1 (MQ=18) atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTtc < 1:286641/93‑1 (MQ=18) atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTtc < 2:2355872/93‑1 (MQ=18) tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTtct < 2:6938024/93‑1 (MQ=18) tGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTtct < 1:4751717/93‑1 (MQ=18) aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTcc < 1:7781114/93‑1 (MQ=18) aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTcc < 2:6648727/93‑1 (MQ=18) aaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCt < 2:2903768/93‑1 (MQ=18) aaCGTATTGCTGTTGCGGGTTAAGCGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCt < 1:5855060/93‑1 (MQ=18) aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTg < 2:3024789/93‑1 (MQ=18) aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTg < 1:2671535/93‑1 (MQ=18) aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTg < 2:5072294/93‑1 (MQ=18) ctATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGCCC‑‑CTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGga < 1:158989/92‑1 (MQ=18) tATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACCGGGAGA‑GGGAGAAAACACT‑CAAA‑GCCTTCTCCTGgag > 2:3559691/1‑93 (MQ=18) tATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCCCACCCCC‑‑ACCCCCTCCCCCAAGGGGG‑GGGAGGAAACAATCC‑AA‑GCCTTCTCCTGgag > 2:6832818/1‑93 (MQ=16) aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGgaga < 1:141602/93‑1 (MQ=18) aTTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGgaga < 2:174216/93‑1 (MQ=18) ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGaa < 1:945397/93‑1 (MQ=18) ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGaa < 1:230901/93‑1 (MQ=18) ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGaa < 2:2000617/93‑1 (MQ=18) ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGaa < 1:3809060/93‑1 (MQ=18) tGCTGTGGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAg < 2:9070318/93‑1 (MQ=18) gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGC‑AC‑CTCTCCCACAGGGGGA‑GGGAGAAAACACT‑CAAA‑GCCTTCTCCTGGAGAAGGGCt > 1:6908493/1‑93 (MQ=18) gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCt < 1:9612040/93‑1 (MQ=18) ttGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCtt < 1:3866219/93‑1 (MQ=18) ttGCGGGTTAAGTGCGCACTGATACCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTTGAGAAGGCCtt < 2:6915725/93‑1 (MQ=18) tGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTg < 1:5937716/93‑1 (MQ=18) tGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTg < 2:2595174/93‑1 (MQ=18) tGCGCGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTg < 2:2871116/93‑1 (MQ=18) cGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCt < 1:4669408/93‑1 (MQ=18) ggTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAt < 2:407435/93‑1 (MQ=18) ggTTAAGTGCGCGCTGATGCCCCCCCCCCC‑‑ACCCCCCCCCCCCCGGAGAGGGGGGAAAAAAAC‑A‑AA‑ACCCTCTCCTTGAGAAAGCCTTGCTAt > 2:4859313/1‑93 (MQ=255) gTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt < 2:9805315/93‑1 (MQ=18) gTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt < 1:2200990/93‑1 (MQ=18) gTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt < 1:9285507/93‑1 (MQ=18) gTTAAGTGCGCGCTGATGCCCTCACCACG‑‑ACCCTCTACCCCGGGGAGA‑GGGAGAACACACT‑C‑AAGGCCTTCTCCTGGAGAGGGCCTTGCTAtt < 2:8954127/93‑1 (MQ=18) aaGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 2:8550083/93‑1 (MQ=18) gTGCGCGCTGTTGCCGTCACCCCG‑‑ACCCTCCCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTg < 1:7317845/93‑1 (MQ=18) tGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGc < 2:3893418/93‑1 (MQ=21) gcgcgcTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 1:8153131/93‑1 (MQ=21) gcgcgcTGATGCCCTCACCCCGCCC‑‑CTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 1:1951231/93‑1 (MQ=18) gcgcgcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 2:7551157/93‑1 (MQ=21) cgcgcTCATGCCCTCACCCCGCCC‑‑CTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCgg < 2:2025144/93‑1 (MQ=18) gcgcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGt < 1:1024307/93‑1 (MQ=21) gcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 2:6677229/93‑1 (MQ=21) gcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 1:6452810/93‑1 (MQ=21) cTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 1:1512254/93‑1 (MQ=21) cTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 1:3367753/93‑1 (MQ=21) cTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 2:1006398/93‑1 (MQ=21) tGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGATAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAg < 1:4525430/93‑1 (MQ=25) gATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 2:3625155/93‑1 (MQ=25) tGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAc < 1:4223592/93‑1 (MQ=25) cccTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 1:701308/93‑1 (MQ=25) ccTCCCCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAACCACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt < 1:2790468/93‑1 (MQ=25) cTCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTa < 2:4734208/93‑1 (MQ=37) tCACCCCG‑‑ACCCTCTCCTACAGGGGGA‑GGGAGAAAACAAT‑C‑AAGGCCTTCTCCTGGAGAAAGCCTTGCTATTAGTTGCGGTTCAGCGCCttca > 2:1313969/1‑91 (MQ=255) tCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGATAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 1:9710794/93‑1 (MQ=37) tCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa < 2:4304431/93‑1 (MQ=37) tCACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa > 2:5229040/1‑93 (MQ=37) cACCCCG‑‑ACCCTCTCCCCCCGGGGGG‑GGGGGGAAACAAT‑CAAA‑GCCCTCTCCTGGAGAAAGGCTTGCTATTAGTTTCGGTACAGCACCTTAat > 2:3854670/1‑93 (MQ=255) cACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat > 1:5356049/1‑93 (MQ=37) cACCCCG‑‑ACCCTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 2:6740337/93‑1 (MQ=37) || TTGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGA‑GGGAGAAAACACT‑C‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3956999‑3957173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |