BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,008,411	+C	coding (494/516 nt)	b4555 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,008,410	1	.	C	100.0%	500.8 / NA	154	A165P (GCT→CCT)	b4555	hypothetical protein
Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (63/91); total (63/91)

Only 100 of 155 total aligned reads displayed.

TCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGC‑GTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGAAA‑GCTGCATTATGGGCAGTGGC  >  NC_000913/4008346‑4008492

tCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtt                                                                     <  1:7177307/93‑1 (MQ=255)

tCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtt                                                                     <  1:2396856/93‑1 (MQ=255)

tCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtt                                                                     >  1:2676227/1‑93 (MQ=255)

tCTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtt                                                                     <  2:6362410/93‑1 (MQ=255)

 cTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gttt                                                                    <  1:1148820/93‑2 (MQ=255)

 cTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gttt                                                                    >  2:2016160/1‑92 (MQ=255)

 cTGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gttt                                                                    >  2:3112731/1‑92 (MQ=255)

  tGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtttg                                                                   >  1:6088940/1‑91 (MQ=255)

  tGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtttg                                                                   <  2:3652544/93‑3 (MQ=255)

  tGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtttg                                                                   >  1:9334969/1‑91 (MQ=255)

  tGGAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtttg                                                                   >  1:4350676/1‑91 (MQ=255)

   ggAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtttgg                                                                  <  2:5823044/93‑4 (MQ=255)

   ggAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtttgg                                                                  <  2:2132599/93‑4 (MQ=255)

   ggAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtttgg                                                                  <  2:5825414/93‑4 (MQ=255)

   ggAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtttgg                                                                  <  1:864717/93‑4 (MQ=255)

   ggAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtttgg                                                                  >  1:1532792/1‑90 (MQ=255)

    gAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtttggt                                                                 <  1:6889041/93‑5 (MQ=255)

    gAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtttggt                                                                 <  1:6573968/93‑5 (MQ=255)

    gAAGTGATGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtttggt                                                                 <  2:4966347/93‑5 (MQ=255)

    gAAGTGATGGCGGGCGGC‑GTGTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑Gtttggt                                                                 <  2:861771/93‑5 (MQ=255)

          aTGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACggg                                                           >  1:750883/1‑93 (MQ=255)

          aTGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACggg                                                           >  2:3448880/1‑93 (MQ=255)

           tGGCGGGCGGCAGTTCA‑AAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGa                                                          <  1:9596275/93‑1 (MQ=255)

           tGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGa                                                          <  2:8409837/93‑1 (MQ=255)

           tGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGa                                                          <  1:1803182/93‑1 (MQ=255)

           tGGCGGGCGGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGa                                                          <  2:2881758/93‑1 (MQ=255)

            ggcgggcgGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGAt                                                         <  2:1818924/93‑1 (MQ=255)

            ggcgggcgGC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGAt                                                         >  2:8863266/1‑93 (MQ=255)

             gcgggcggC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATg                                                        <  2:6051594/93‑1 (MQ=255)

             gcgggcggC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATg                                                        <  2:8626408/93‑1 (MQ=255)

               gggcggC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGaa                                                      <  1:8916742/93‑1 (MQ=255)

               gggcggC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGaa                                                      >  1:1242716/1‑93 (MQ=255)

               gggcggC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGaa                                                      <  2:7651843/93‑1 (MQ=255)

               gggcggC‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGaa                                                      <  1:3076046/93‑1 (MQ=255)

                ggcggc‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAac                                                     >  1:8626918/1‑93 (MQ=255)

                ggcggc‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAac                                                     >  1:8626919/1‑93 (MQ=255)

                ggcggc‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAac                                                     >  1:5145751/1‑93 (MQ=255)

                ggcggc‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAac                                                     <  2:4349308/93‑1 (MQ=255)

                ggcggc‑GTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAac                                                     <  1:10002085/93‑1 (MQ=255)

                 gcggc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAacg                                                    <  2:5280233/93‑1 (MQ=255)

                 gcggc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAacg                                                    >  1:2907039/1‑93 (MQ=255)

                 gcggc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGAGTGTATTGCGGTTG‑GTGACGGGATGAacg                                                    >  1:6401998/1‑93 (MQ=255)

                  cggc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAacga                                                   <  1:10033062/93‑1 (MQ=255)

                   ggc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAacgac                                                  <  2:8753943/93‑1 (MQ=255)

                   ggc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAacgac                                                  <  2:1182648/93‑1 (MQ=255)

                   ggc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGGGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAacgac                                                  >  1:2868802/1‑93 (MQ=255)

                    gc‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAacgacg                                                 >  2:3783878/1‑93 (MQ=255)

                     c‑gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGc                                                <  1:4552484/93‑1 (MQ=255)

                       gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGcc                                               <  2:6448755/93‑1 (MQ=255)

                       gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGcc                                               <  1:6408410/93‑1 (MQ=255)

                       gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGcc                                               >  1:7202564/1‑93 (MQ=255)

                       gTTTCAAAAGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTNGGTGACGGGATGAACGACGcg                                               >  1:8760513/1‑92 (MQ=255)

                         ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGCCGCCGa                                             >  2:3275039/5‑93 (MQ=255)

                         ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGa                                             >  1:4004406/5‑93 (MQ=255)

                         ttcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGa                                             >  1:2638946/5‑93 (MQ=255)

                          tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGaa                                            >  2:7328160/4‑93 (MQ=255)

                          tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGaa                                            <  1:1680756/90‑1 (MQ=255)

                          tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGaa                                            <  2:776121/90‑1 (MQ=255)

                          tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGaa                                            >  2:7064425/4‑93 (MQ=255)

                          tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGaa                                            >  2:6112688/4‑93 (MQ=255)

                          tcaaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGaa                                            >  2:5931017/4‑93 (MQ=255)

                           caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGaaa                                           <  2:6578560/91‑1 (MQ=255)

                           caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGaaa                                           <  2:318095/91‑1 (MQ=255)

                           caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGaaa                                           <  2:9396201/91‑1 (MQ=255)

                           caaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGaaa                                           <  2:6411942/91‑1 (MQ=255)

                            aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAAt                                          >  1:798070/2‑93 (MQ=255)

                            aaaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAAt                                          >  1:865711/2‑93 (MQ=255)

                             aaaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATg                                         >  2:2286238/1‑93 (MQ=255)

                              aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGc                                        <  2:7954981/93‑1 (MQ=255)

                              aaGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGc                                        <  1:2939580/93‑1 (MQ=255)

                               aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCt                                       <  1:2133690/93‑1 (MQ=255)

                               aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCt                                       >  1:5588573/1‑93 (MQ=255)

                               aGGCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCt                                       <  1:9889411/93‑1 (MQ=255)

                                ggCCATGCGCTGGAAGCGGTGGCGAAGAAACTGGGCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTg                                      <  2:7244493/93‑1 (MQ=255)

                                                             actgggCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATggg         <  2:635603/89‑1 (MQ=255)

                                                             actgggCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATggg         >  2:6918389/5‑93 (MQ=255)

                                                             actgggCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATggg         <  2:10047426/89‑1 (MQ=255)

                                                             actgggCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATggg         >  1:7427623/5‑93 (MQ=255)

                                                             actgggCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATggg         <  1:8996608/89‑1 (MQ=255)

                                                             actgggCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATggg         <  1:7457463/89‑1 (MQ=255)

                                                              ctgggCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGCAATGCTGTCGATGGCGGGGAAAGGCTGCATTATCGGc        >  2:7442846/4‑93 (MQ=255)

                                                              ctgggCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGc        >  2:7442845/4‑93 (MQ=255)

                                                              ctgggCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGc        >  1:5283558/4‑93 (MQ=255)

                                                              ctgggCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGc        <  1:3790479/90‑1 (MQ=255)

                                                               tgggCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCa       <  1:3862419/91‑1 (MQ=255)

                                                               tgggCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCa       <  2:9225273/91‑1 (MQ=255)

                                                               tgggCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCa       >  2:9815504/3‑93 (MQ=255)

                                                               tgggCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCa       <  2:5431870/91‑1 (MQ=255)

                                                               tgggCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCa       <  1:6431365/91‑1 (MQ=255)

                                                                gggCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAg      <  1:5581889/92‑1 (MQ=255)

                                                                 ggCTACAGCCTGAAGGATTGTATTGA‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGt     <  2:5907352/93‑1 (MQ=255)

                                                                  gCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTg    <  1:5093849/93‑1 (MQ=255)

                                                                  gCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTg    <  1:1490113/93‑1 (MQ=255)

                                                                  gCTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGAAGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTg    <  1:6885365/93‑1 (MQ=255)

                                                                   cTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgc   >  2:7560954/1‑92 (MQ=255)

                                                                   cTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgc   >  2:3591843/1‑92 (MQ=255)

                                                                   cTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgc   <  1:6556074/93‑2 (MQ=255)

                                                                   cTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgc   <  2:1340347/93‑2 (MQ=255)

                                                                   cTACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgc   >  1:7893199/1‑92 (MQ=255)

                                                                    tACAGCCTGAAGGATTGTATTGC‑GTTTGGTGACGGGATGAACGACGCCGAAATGCTGTCGATGGCGGGGAAAGGCTGCATTATGGGCAGTgcg  >  1:2286645/1‑91 (MQ=255)

TCTGGAAGTGATGGCGGGCGGC‑GTTTC‑AAAGGCCATGCGCTGGAAG‑GCTGGCG‑‑‑‑AACT‑GGCTACAG‑CTGAAGGATTG‑ATTGC‑GTT‑‑GTGACGGGATGAACGACGCCGAAATGCTGTCGATGGC‑GGGAAA‑GCTGCATTATGGGCAGTGGC  >  NC_000913/4008346‑4008492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`