Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,997,285 (T)6→7 coding (629/756 nt) b2865 ← putative lipoprotein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,997,2791.T83.8% 1334.0 / 237.3 433coding (635/756 nt)b2865putative lipoprotein
Reads supporting (aligned to +/- strand):  ref base . (32/38);  new base T (176/186);  total (209/224)
Fisher's exact test for biased strand distribution p-value = 6.96e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01

Only 100 of 489 total aligned reads displayed.

GCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGA‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATC  >  NC_000913/2997187‑2997371
                                                                                              |                                                                                            
gcAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGa                                                                                               <  1:8905147/93‑1 (MQ=255)
 cAAGTAACGTAGCGGATCAATTGCCGTGGCACGGTAACAAATCTGGAAATGCAGGCGAACAGAGGCCGCATCCGTGCTCCCCATAGT‑GGCGA‑t                                                                                             <  1:8996354/93‑1 (MQ=255)
  aaGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGA‑tt                                                                                            <  1:9637899/93‑1 (MQ=255)
  aaGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGA‑tt                                                                                            <  2:3248661/93‑1 (MQ=255)
   aGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGA‑ttt                                                                                           >  2:166225/1‑93 (MQ=255)
   aGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGA‑ttt                                                                                           >  1:3796572/1‑93 (MQ=255)
   aGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGA‑ttt                                                                                           <  2:481396/93‑1 (MQ=255)
    gTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGA‑tttt                                                                                          >  2:8581954/1‑93 (MQ=255)
       aCGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGA‑ttttttt                                                                                       <  1:8539722/93‑2 (MQ=255)
         gTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGATACCCATAGT‑GGCGA‑tttttttgc                                                                                     >  1:3266795/1‑90 (MQ=255)
            gCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCa                                                                                   >  1:6883203/1‑93 (MQ=255)
              ggATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGc                                                                                 >  1:2772384/1‑93 (MQ=255)
               gATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGcc                                                                                >  1:103805/1‑93 (MQ=255)
               gATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGcc                                                                                >  2:5322534/1‑93 (MQ=255)
               gATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGA‑TTTTTTGCCCAGCCt                                                                               <  2:2524010/93‑1 (MQ=255)
                 tCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCtt                                                                              <  1:4653948/93‑1 (MQ=255)
                  cAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTc                                                                             <  1:5566664/93‑1 (MQ=255)
                  cAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTc                                                                             <  2:6362343/93‑1 (MQ=255)
                   aaTTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCa                                                                            >  2:3413919/1‑93 (MQ=255)
                    aTTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCAc                                                                           <  1:5131916/93‑1 (MQ=255)
                       gCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCt                                                                        <  1:2111139/93‑1 (MQ=255)
                        ccGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCtt                                                                       <  1:9390667/93‑1 (MQ=255)
                         cGTTGCACGGTAACGAATATGGAAATGCAGGCGAACAGATGCCGCATCAGTGCTCCCCATAGT‑GGCGA‑TTTTTTGCCGCGACTTAACGCTTTg                                                                     >  1:9842735/1‑93 (MQ=255)
                           ttGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGA‑TTTTTTGCCCAGCCTTCACGCTTTGcc                                                                   >  2:184346/1‑93 (MQ=255)
                            tGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGcc                                                                   <  1:5317761/93‑1 (MQ=255)
                              cACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCa                                                                 <  2:2962398/93‑1 (MQ=255)
                               aCGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCat                                                                <  1:5614995/93‑1 (MQ=255)
                                cGGTAACGAATATGAAAATGCAGGCGACCAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCatt                                                               <  2:4991875/93‑1 (MQ=255)
                                  gTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCattat                                                             >  2:681384/1‑93 (MQ=255)
                                   tAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGCTTTTTTTGCCCACACTTCACGCTTTGCCCattatt                                                            <  1:1778600/93‑1 (MQ=255)
                                    aaCGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGACTTTTTTGCCCAGCCTTCACGCTTTGCCCATTAttt                                                           >  2:7590561/1‑93 (MQ=255)
                                    aaCGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGGGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTAttt                                                           >  1:3961884/1‑93 (MQ=255)
                                      cGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTAc                                                         <  1:6687042/93‑1 (MQ=255)
                                      cGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTAc                                                         <  1:7869529/93‑1 (MQ=255)
                                       gAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTAcc                                                        <  2:6283369/93‑1 (MQ=255)
                                        aaTCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCa                                                       >  1:8000372/1‑93 (MQ=255)
                                        aaTCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGA‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAg                                                      <  1:2505509/93‑1 (MQ=255)
                                         aTCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAg                                                      <  1:6155597/93‑1 (MQ=255)
                                          tCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGc                                                     <  1:6246870/93‑1 (MQ=255)
                                           cTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCa                                                    <  1:9762452/93‑1 (MQ=255)
                                           cTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCa                                                    >  2:9752810/1‑93 (MQ=255)
                                            tGGAAATGGAGGCGGACAGATGCCGCCTGTGTGCTCCCCATAGT‑GGCTATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCAt                                                   <  1:4883532/93‑1 (MQ=255)
                                            tGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCAt                                                   >  2:8916170/1‑93 (MQ=255)
                                               aaaTGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgt                                                <  1:9978103/93‑1 (MQ=255)
                                                aaTGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCgtg                                               >  1:7211489/1‑93 (MQ=255)
                                                  tGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTc                                             <  2:3542577/93‑1 (MQ=255)
                                                  tGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTc                                             >  1:3908611/1‑93 (MQ=255)
                                                     aGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCAtt                                          >  2:8028168/1‑93 (MQ=255)
                                                      ggCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTa                                         <  2:9605084/93‑1 (MQ=255)
                                                      ggCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTa                                         <  2:2745758/93‑1 (MQ=255)
                                                      ggCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTa                                         <  1:1373942/93‑1 (MQ=255)
                                                      ggCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTa                                         >  1:1249379/1‑93 (MQ=255)
                                                      ggCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTa                                         <  1:4420771/93‑1 (MQ=255)
                                                      ggCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTa                                         >  1:7063948/1‑93 (MQ=255)
                                                          aaCAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATggg                                     <  2:769690/93‑1 (MQ=255)
                                                           aCAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGc                                    >  2:5929123/1‑93 (MQ=255)
                                                             aGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGt                                  <  1:9556222/93‑1 (MQ=255)
                                                             aGATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGt                                  >  2:39863/1‑93 (MQ=255)
                                                              gATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTa                                 <  2:207313/93‑1 (MQ=255)
                                                              gATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTa                                 >  2:4520099/1‑93 (MQ=255)
                                                              gATGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTa                                 >  1:6456764/1‑93 (MQ=255)
                                                               aTGCCGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCCCGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTaa                                <  2:2245563/93‑1 (MQ=255)
                                                                tGCCGCATCCGTGCTCCCCATAGT‑GGCGA‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGc                              <  1:8668788/93‑1 (MQ=255)
                                                                  ccGCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGcc                             <  2:6940989/93‑1 (MQ=255)
                                                                    gCATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCga                           >  1:2284133/1‑92 (MQ=255)
                                                                     cATCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgta                          <  2:6457738/93‑1 (MQ=255)
                                                                     cATCCGTGCTCCCCATAGT‑GGCGA‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaa                         >  1:8423188/1‑93 (MQ=255)
                                                                      aTCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaa                         >  1:5775200/1‑93 (MQ=255)
                                                                       tCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaat                        <  1:2009912/93‑1 (MQ=255)
                                                                       tCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaat                        >  1:7427103/1‑93 (MQ=255)
                                                                       tCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaat                        >  2:8478057/1‑93 (MQ=255)
                                                                       tCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaat                        >  2:1494130/1‑93 (MQ=255)
                                                                       tCCGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaat                        <  2:7174230/93‑1 (MQ=255)
                                                                       tCCGTGCTCCCCATAGT‑GGCGA‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaatg                       >  2:1306599/1‑93 (MQ=255)
                                                                        ccGTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaatg                       <  1:9262515/93‑1 (MQ=255)
                                                                        ccGTGCTCCCCATAGT‑GGCGA‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaatgt                      <  2:4330469/93‑1 (MQ=255)
                                                                          gTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaatgta                     >  2:2362588/1‑93 (MQ=255)
                                                                          gTGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaatgta                     >  2:197172/1‑93 (MQ=255)
                                                                           tGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGGCTTCACGCTTTGGCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGACgtaatgtaa                    >  2:6616426/1‑93 (MQ=255)
                                                                           tGCTCCCCATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCgtaatgtaa                    >  2:7457247/1‑93 (MQ=255)
                                                                             cTCACCATAGTGGGCAT‑TTTTTTGCCCAGCCTTCACGCTTGGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATc                  <  1:1116913/93‑1 (MQ=255)
                                                                               ccccATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCtt                >  2:2596571/1‑93 (MQ=255)
                                                                               ccccATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCtt                >  2:7324773/1‑93 (MQ=255)
                                                                                 ccATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCa              <  2:5736558/93‑1 (MQ=255)
                                                                                 ccATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCa              <  2:4137783/93‑1 (MQ=255)
                                                                                 ccATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCa              <  1:2905691/93‑1 (MQ=255)
                                                                                  cATAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCAc             >  2:5561751/1‑93 (MQ=255)
                                                                                   aTAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACt            <  1:2596462/93‑1 (MQ=255)
                                                                                    tAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACtg           >  2:3065918/1‑93 (MQ=255)
                                                                                    tAGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACtg           >  1:2683484/1‑93 (MQ=255)
                                                                                     aGT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACtgt          <  1:314812/93‑1 (MQ=255)
                                                                                      gT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACtgtg         >  1:8180128/1‑93 (MQ=255)
                                                                                      gT‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACtgtg         >  1:1609242/1‑93 (MQ=255)
                                                                                       t‑GGCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTgtgt        >  1:3732878/1‑93 (MQ=255)
                                                                                       t‑GGCGA‑TTTTTTGCCCAGCCTTCACGCTTTTCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGtt       <  2:9886386/93‑1 (MQ=255)
                                                                                         ggCGATTTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGtt       <  1:3418496/93‑1 (MQ=255)
                                                                                         ggCGA‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGttt      <  2:930509/93‑1 (MQ=255)
                                                                                         ggCGA‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGttt      <  2:4832511/93‑1 (MQ=255)
                                                                                           cGA‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTaa    <  1:7528271/93‑1 (MQ=255)
                                                                                             a‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATc  >  1:4283749/1‑93 (MQ=255)
                                                                                              |                                                                                            
GCAAGTAACGTAGCGGATCAATTGCCGTTGCACGGTAACGAATCTGGAAATGCAGGCGAACAGATGCCGCATCCGTGCTCCCCATAGT‑GGCGA‑TTTTTTGCCCAGCCTTCACGCTTTGCCCATTATTTACCAGCATCGTGTCATTATGGGCGTAAGCCGTAATGTAATCTTCACTGTGTTTAATC  >  NC_000913/2997187‑2997371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑