Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,115,116 +C coding (2013/2028 nt) b2974 ← putative endoglucanase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,115,1151.C99.4% 1138.9 / ‑2.3 348coding (2014/2028 nt)b2974putative endoglucanase
Reads supporting (aligned to +/- strand):  ref base . (2/0);  new base C (164/182);  total (166/182)
Fisher's exact test for biased strand distribution p-value = 2.27e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 374 total aligned reads displayed.

GTTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGTAA  >  NC_000913/3115023‑3115207
                                                                                              |                                                                                            
gTTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑ttt                                                                                               >  1:6307535/1‑93 (MQ=255)
gTTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑ttt                                                                                               >  1:9685594/1‑93 (MQ=255)
  ttGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑cc                                                                                            <  2:7026638/93‑2 (MQ=255)
  ttGCTGGTATCTGCACGCAGCGGGATTACATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑cc                                                                                            <  1:3920590/93‑2 (MQ=255)
   tGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑cct                                                                                           >  2:9115334/1‑91 (MQ=255)
   tGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑cct                                                                                           <  1:1805762/93‑3 (MQ=255)
    gCTGGTATCTGCACGCTGCGGGAATGCATAAGGATCGTTACCCACCTGAGTCTCATATCCAAAGCCGTTAAGGTTCAGCAGCGGCA‑tct‑cctc                                                                                          >  1:7722565/1‑90 (MQ=255)
    gCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑cctg                                                                                          >  2:8607729/1‑90 (MQ=255)
     cTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑cctgc                                                                                         <  1:1574975/93‑5 (MQ=255)
       ggTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCgg                                                                                        >  1:4274738/1‑93 (MQ=255)
       ggTATCGGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCgg                                                                                        <  1:6501741/93‑1 (MQ=255)
         tATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGac                                                                                      >  2:7668805/1‑92 (MQ=255)
         tATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGAt                                                                                      <  2:5044027/93‑1 (MQ=255)
           tCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCGAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCg                                                                                    >  1:3533092/1‑93 (MQ=255)
           tCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCg                                                                                    >  2:2919161/1‑93 (MQ=255)
            cTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCga                                                                                   >  1:8589945/1‑93 (MQ=255)
             tGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCgag                                                                                  >  1:8341358/1‑93 (MQ=255)
              gCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCgaga                                                                                 >  1:7871406/1‑93 (MQ=255)
               cACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGAt                                                                                >  2:1222530/1‑93 (MQ=255)
               cACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGAt                                                                                <  2:2068667/93‑1 (MQ=255)
                aCGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATc                                                                               <  1:5317246/93‑1 (MQ=255)
                 cGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCg                                                                              >  2:9236040/1‑93 (MQ=255)
                  gCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGc                                                                             <  2:2334984/93‑1 (MQ=255)
                  ccAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGc                                                                             <  2:7239792/92‑1 (MQ=255)
                    aGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCa                                                                           >  2:7957056/1‑93 (MQ=255)
                    aGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCa                                                                           <  2:3271286/93‑1 (MQ=255)
                     gCGGGATTGCATAAGGATCGTTACCCCCCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCAt                                                                          <  1:5220301/93‑1 (MQ=255)
                      cGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATa                                                                         <  1:2219430/93‑1 (MQ=255)
                      cGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATa                                                                         >  2:8166805/1‑93 (MQ=255)
                      cGGGATGTCATAAGGATCGGTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATa                                                                         <  1:7183688/93‑1 (MQ=255)
                       gggATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAg                                                                        <  2:8344845/93‑1 (MQ=255)
                       gggATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAg                                                                        <  1:1357289/93‑1 (MQ=255)
                        ggATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGc                                                                       >  2:2518868/1‑93 (MQ=255)
                        ggATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGc                                                                       <  1:9339406/93‑1 (MQ=255)
                         gATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCATCGGCATTTT‑CTGCGGATCGAGATCGCCATAGCt                                                                      >  1:8752902/1‑93 (MQ=255)
                         gATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCt                                                                      >  1:5854056/1‑93 (MQ=255)
                          aTTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTa                                                                     <  2:3059853/93‑1 (MQ=255)
                            tGCATAAGGATCGTTACCCTCCTGAGTCGCATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACt                                                                   <  1:3670489/93‑1 (MQ=255)
                            tGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACt                                                                   >  2:2675362/1‑93 (MQ=255)
                              cATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTa                                                                 <  1:3135223/93‑1 (MQ=255)
                               aTAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTaa                                                                <  2:9562498/93‑1 (MQ=255)
                               aTAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTaa                                                                >  2:4022530/1‑93 (MQ=255)
                                tAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTaaa                                                               >  1:1775562/1‑93 (MQ=255)
                                tAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTaaa                                                               >  1:3278113/1‑93 (MQ=255)
                                tAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTaaa                                                               <  2:4905342/93‑1 (MQ=255)
                                tAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTaaa                                                               <  1:4342094/93‑1 (MQ=255)
                                 aaGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAAt                                                              <  1:1922473/93‑1 (MQ=255)
                                   ggATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGc                                                            <  2:7634722/93‑1 (MQ=255)
                                    gATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCt                                                           >  2:6561542/1‑93 (MQ=255)
                                     aTCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTc                                                          <  1:3362459/93‑1 (MQ=255)
                                      tCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCa                                                         >  2:4482632/1‑93 (MQ=255)
                                       cGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCaa                                                        <  2:714566/93‑1 (MQ=255)
                                        gTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAAc                                                       <  2:1181188/93‑1 (MQ=255)
                                         ttACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACa                                                      <  2:9739184/93‑1 (MQ=255)
                                         ttACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACa                                                      >  2:6495002/1‑93 (MQ=255)
                                          tACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACag                                                     >  1:2440717/1‑93 (MQ=255)
                                          tACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACag                                                     <  2:863315/93‑1 (MQ=255)
                                           aCCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACaga                                                    >  2:8915597/1‑93 (MQ=255)
                                            cccACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACagag                                                   >  2:4867600/1‑93 (MQ=255)
                                             cccccTGAGTCACAAATTCCAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                                                  <  2:4341341/90‑1 (MQ=255)
                                             ccACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                                                  <  1:5068693/93‑1 (MQ=255)
                                             ccACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                                                  <  2:5975040/93‑1 (MQ=255)
                                             ccACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                                                  <  2:5357578/93‑1 (MQ=255)
                                             ccACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                                                  >  1:8884859/1‑93 (MQ=255)
                                               cccTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATg                                                <  1:1012788/92‑1 (MQ=255)
                                                 cTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGcc                                              <  2:8096207/93‑1 (MQ=255)
                                                    aGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGc                                           >  1:7633745/1‑93 (MQ=255)
                                                    aGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGc                                           >  1:2566864/1‑93 (MQ=255)
                                                    aGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGc                                           >  1:9917142/1‑93 (MQ=255)
                                                     gTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCa                                          >  2:1494217/1‑93 (MQ=255)
                                                         caTATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAAt                                      >  2:3380334/1‑93 (MQ=255)
                                                          atatTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATc                                     >  2:6983288/1‑93 (MQ=255)
                                                           tatTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATcc                                    >  1:1980553/1‑93 (MQ=255)
                                                           tatTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATcc                                    <  1:3751004/93‑1 (MQ=255)
                                                            atTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAgaga                                                  <  2:3982189/78‑1 (MQ=255)
                                                             ttCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCgg                                  <  2:1580831/93‑1 (MQ=255)
                                                              tCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGa                                 <  2:5704548/93‑1 (MQ=255)
                                                              tCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGa                                 <  2:4297223/93‑1 (MQ=255)
                                                              tCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGa                                 <  1:8537097/93‑1 (MQ=255)
                                                              tCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGa                                 <  2:6647461/93‑1 (MQ=255)
                                                                aaaGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATg                               >  1:4085242/1‑93 (MQ=255)
                                                                  aGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGa                             <  2:1705462/93‑1 (MQ=255)
                                                                  aGCCGTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGa                             <  2:1034668/93‑1 (MQ=255)
                                                                      gTTAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTc                         <  1:5563206/93‑1 (MQ=255)
                                                                       ttAAGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCg                        >  1:4607158/1‑93 (MQ=255)
                                                                         aaGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGac                      >  1:4023088/1‑92 (MQ=255)
                                                                         aaGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGaa                      <  2:461625/93‑1 (MQ=255)
                                                                         aaGGATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGaa                      <  1:9624538/93‑1 (MQ=255)
                                                                            gATCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGc                   <  1:5655790/93‑1 (MQ=255)
                                                                              tCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAg                 >  1:2996746/1‑93 (MQ=255)
                                                                              tCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAg                 <  1:2748697/93‑1 (MQ=255)
                                                                              tCAGCAGCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAg                 <  1:6051614/93‑1 (MQ=255)
                                                                               cagcagCGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAgc                >  2:9436612/1‑93 (MQ=255)
                                                                                agcagcGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAgag               >  1:6564223/1‑91 (MQ=255)
                                                                                 gcagcGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCACAATCCGGATGGAAGTCGAACGCAgcgc              >  1:4888003/1‑93 (MQ=255)
                                                                                 gcagcGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAgcgc              >  1:4646604/1‑93 (MQ=255)
                                                                                  cagcGGCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCt             <  2:610614/93‑1 (MQ=255)
                                                                                       gCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTc        >  2:2792935/1‑93 (MQ=255)
                                                                                       gCA‑TTTCCTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTc        >  2:3799182/1‑93 (MQ=255)
                                                                                             t‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGTaa  <  1:6902330/93‑1 (MQ=255)
                                                                                              |                                                                                            
GTTTGCTGGTATCTGCACGCAGCGGGATTGCATAAGGATCGTTACCCACCTGAGTCACATATTCAAAGCCGTTAAGGATCAGCAGCGGCA‑TTT‑CTGCGGATCGAGATCGCCATAGCTACTTAAATGCTCAACAGAGATGCCCGCAAAATCCGGATGGAAGTCGAACGCAGCGCTGTTTCCTGTAA  >  NC_000913/3115023‑3115207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑