New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3129355NA (NA)36 (0.090) 6/184 12.2 14.6% intergenic (+146/+1) trs59/b2983 IS5 transposase/hypothetical protein
?NC_000913 3132097 = 211 (0.550)intergenic (‑125/‑49) yghS/yghT hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 214 total aligned reads displayed.

TTACGTGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAACACCTCCATTAATTGCCGTTATTGGTAGCGA  >  NC_000913/3132005‑3132189
                                                                                            |                                                                                            
tttcGTGGGCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACatat                                                                                              <  2:2999469/90‑1 (MQ=255)
ttACGTGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACatat                                                                                              <  2:97502/93‑1 (MQ=255)
ttACGTGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACatat                                                                                              <  2:202922/93‑1 (MQ=255)
ttACGTGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACatat                                                                                              >  2:4176805/1‑93 (MQ=255)
 tACGTGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATAtt                                                                                             <  1:2900673/93‑1 (MQ=255)
  aCGTGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTa                                                                                            <  1:6412980/93‑1 (MQ=255)
  aCGTGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTa                                                                                            <  1:3081105/93‑1 (MQ=255)
   cGTGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTaa                                                                                           <  1:6052436/93‑1 (MQ=255)
   cGTGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTaa                                                                                           <  1:3865473/93‑1 (MQ=255)
    gTGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAAc                                                                                          <  1:822532/93‑1 (MQ=255)
    gTGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAAc                                                                                          <  1:1827943/93‑1 (MQ=255)
     tGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAAcc                                                                                         <  2:4472734/93‑1 (MQ=255)
     tGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAAcc                                                                                         <  1:3863103/93‑1 (MQ=255)
      ggTCCGTGCTCTGAATATCCGTTCAACCTTATTGTGACGTTGGTTAATTGTGACATTGACCTGAATTCCGCATTCATAAACACATATTAACCa                                                                                        <  2:8982390/93‑1 (MQ=255)
      ggTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCa                                                                                        <  2:3873297/93‑1 (MQ=255)
      ggTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCa                                                                                        <  1:9604239/93‑1 (MQ=255)
      ggTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCa                                                                                        <  2:547468/93‑1 (MQ=255)
      ggTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCa                                                                                        >  2:6837397/1‑93 (MQ=255)
       gTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCaa                                                                                       <  1:2628707/93‑1 (MQ=255)
        tCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCaaa                                                                                      <  2:1262075/93‑1 (MQ=255)
        tCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCaaa                                                                                      <  1:3641162/93‑1 (MQ=255)
        tCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCaaa                                                                                      <  1:9143121/93‑1 (MQ=255)
         ccGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCaaat                                                                                     <  2:1964877/93‑1 (MQ=255)
         ccGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCaaat                                                                                     <  1:2163211/93‑1 (MQ=255)
          cGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCaaata                                                                                    <  1:7724909/93‑1 (MQ=255)
          cGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCaaata                                                                                    <  1:2025550/93‑1 (MQ=255)
          cGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCaaata                                                                                    <  2:267716/93‑1 (MQ=255)
            tGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCaaataaa                                                                                  >  2:5691636/1‑93 (MQ=255)
            tGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCaaataaa                                                                                  <  1:8647273/93‑1 (MQ=255)
            tGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCaaataaa                                                                                  <  1:1583366/93‑1 (MQ=255)
             gCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCaaataaat                                                                                 <  1:5355956/93‑1 (MQ=255)
             gCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCaaataaat                                                                                 <  2:7956009/93‑1 (MQ=255)
             gCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCaaataaat                                                                                 >  1:1625226/1‑93 (MQ=255)
               tCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAatat                                                                               <  1:4177935/93‑1 (MQ=255)
               tCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAatat                                                                               <  1:7518587/93‑1 (MQ=255)
               tCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAatat                                                                               <  2:4579076/93‑1 (MQ=255)
                cAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATAtt                                                                              <  2:6999947/93‑1 (MQ=255)
                cAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATAtt                                                                              <  1:3524389/93‑1 (MQ=255)
                 aGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATAttt                                                                             <  2:5866857/93‑1 (MQ=255)
                 aGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATAttt                                                                             <  1:151492/93‑1 (MQ=255)
                  gAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATAtttt                                                                            <  2:1284613/93‑1 (MQ=255)
                  gAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATAtttt                                                                            <  1:2759095/93‑1 (MQ=255)
                   aaTATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATAttttt                                                                           <  2:9097825/93‑1 (MQ=255)
                    atatCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTa                                                                          <  1:10040592/93‑1 (MQ=255)
                     tatCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTaa                                                                         <  2:4897334/93‑1 (MQ=255)
                     tatCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTaa                                                                         <  2:264421/93‑1 (MQ=255)
                     tatCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTaa                                                                         >  2:5658691/1‑93 (MQ=255)
                      atCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAAt                                                                        <  1:6457422/93‑1 (MQ=255)
                       tCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATg                                                                       <  1:9724945/93‑1 (MQ=255)
                       tCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATg                                                                       <  2:1025694/93‑1 (MQ=255)
                        ccGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATgg                                                                      <  2:3700808/93‑1 (MQ=255)
                        ccGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATgg                                                                      <  2:4806829/93‑1 (MQ=255)
                        ccGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATgg                                                                      <  2:8666655/93‑1 (MQ=255)
                         cGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGa                                                                     <  1:7834867/93‑1 (MQ=255)
                         cGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGa                                                                     <  2:1451195/93‑1 (MQ=255)
                         cGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGa                                                                     <  1:2993104/93‑1 (MQ=255)
                          gTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTCCGCTTTCATAAAAACATGTTAACCAAATAAATATTTTTAATGGat                                                                    <  2:6393291/93‑1 (MQ=255)
                          gTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGat                                                                    <  1:4680207/93‑1 (MQ=255)
                          gTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGat                                                                    <  1:22063/93‑1 (MQ=255)
                           ttCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGata                                                                   <  2:7686362/93‑1 (MQ=255)
                           ttCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGata                                                                   <  2:2218625/93‑1 (MQ=255)
                           ttCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGata                                                                   <  2:5220392/93‑1 (MQ=255)
                            tCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGatat                                                                  <  2:9868728/93‑1 (MQ=255)
                            tCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATCTTTAATGGatat                                                                  <  1:7588952/93‑1 (MQ=255)
                             taaCCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATAtt                                                                 <  2:3543368/92‑1 (MQ=255)
                             cAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATAtt                                                                 <  1:5232650/93‑1 (MQ=255)
                              aaCCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATAttt                                                                <  1:1977833/93‑1 (MQ=255)
                                 cTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATttaaa                                                             <  2:3952675/93‑1 (MQ=255)
                                 cTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATttaaa                                                             <  1:8985654/93‑1 (MQ=255)
                                        tgACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAgg                                                      <  1:6894838/93‑1 (MQ=255)
                                           cAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGata                                                   <  1:7169049/93‑1 (MQ=255)
                                           cAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGata                                                   <  2:3723155/93‑1 (MQ=255)
                                            aaTGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGatat                                                  <  1:6468798/93‑1 (MQ=255)
                                            aaTGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGatat                                                  <  2:6147100/93‑1 (MQ=255)
                                            aaTGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGatat                                                  <  1:9261254/93‑1 (MQ=255)
                                              tGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGatatat                                                >  2:8045344/1‑93 (MQ=255)
                                                gTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTc                                              <  2:4365629/93‑1 (MQ=255)
                                                      tgtaACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAg                                        <  1:8285488/93‑1 (MQ=255)
                                                       gtgACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGt                                       <  2:3245002/93‑1 (MQ=255)
                                                          aCATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCaa                                    <  1:5691637/93‑1 (MQ=255)
                                                           cATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAAt                                   <  1:3457433/93‑1 (MQ=255)
                                                            aTTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATa                                  >  1:4561319/1‑93 (MQ=255)
                                                            aTTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATa                                  <  1:7424730/93‑1 (MQ=255)
                                                              tGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAac                                <  2:838938/93‑1 (MQ=255)
                                                                aCCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAacac                              <  1:3695889/93‑1 (MQ=255)
                                                                aCCTGAATTACGCTTTCATAAAAACATAATAACCAAATTAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAacac                              <  1:1157742/93‑1 (MQ=255)
                                                                 ccTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAACAcc                             <  1:6242888/93‑1 (MQ=255)
                                                                   tGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAACACCTc                           >  2:6917479/1‑93 (MQ=255)
                                                                          cGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAACCCCTCCATTAAt                    <  2:7305397/93‑1 (MQ=255)
                                                                                 aTAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAACACCTCCATTAATTGCCGtt             <  1:2363950/93‑1 (MQ=255)
                                                                                  tAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAACACCTCCATTAATTGCCGTTa            >  2:6918899/1‑93 (MQ=255)
                                                                                  tAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAACACCTCCATTAATTGCCGTTa            <  1:8050077/93‑1 (MQ=255)
                                                                                  tAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAACACCTCCATTAATTGCCGTTa            >  1:9676774/1‑93 (MQ=255)
                                                                                    aaaaCATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAACACCTCCATTAATTGCCGTTAtt          <  1:947760/93‑1 (MQ=255)
                                                                                     aaaCATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAACACCTCCATTAGTTGCCGTTATTg         >  1:8786103/1‑93 (MQ=255)
                                                                                     aaaCATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAACACCTCCATTAATTGCCGTTATTg         <  1:9215246/93‑1 (MQ=255)
                                                                                      aaCATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAACACCTCCATTAATTGCCGTTATTgg        <  2:3434881/93‑1 (MQ=255)
                                                                                            ttAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAACACCTCCATTAATTGCCGTTATTGGTAGCGa  >  2:4680332/1‑93 (MQ=255)
                                                                                            ttAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAACACCTCCATTAATTGCCGTTATTGGTAGCGa  <  1:9921672/93‑1 (MQ=255)
                                                                                            ttAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAACACCTCCATTAATTGCCGTTATTGGTAGCGa  >  2:2718684/1‑93 (MQ=255)
                                                                                            |                                                                                            
TTACGTGGTCCGTGCTCAGAATATCCGTTCAACCTTATTGTGACAATGGTTAATTGTGACATTGACCTGAATTACGCTTTCATAAAAACATATTAACCAAATAAATATTTTTAATGGATATTTAAATTAAAGGATATATTCATGCAGTCAATAACACCTCCATTAATTGCCGTTATTGGTAGCGA  >  NC_000913/3132005‑3132189

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.