BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,949,356	0	T	C	74.2%	1477.0 / inf	983	S178S (AGT→AGC)	yecD	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (130/124); new base C (390/339); total (520/463)
Fisher's exact test for biased strand distribution p-value = 5.59e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.90e-02
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 1001 total aligned reads displayed.

TCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCG  >  NC_000913/1949264‑1949448

 ccACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTa                                                                                              <  1:68937/93‑1 (MQ=255)

  cACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCAt                                                                                             <  2:9478380/93‑1 (MQ=255)

   cccgcccgcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATc                                                                                            <  2:7013660/92‑1 (MQ=255)

    ccgcccgcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCAtta                                                                                           >  1:2464848/1‑91 (MQ=255)

      ccccgcAATTCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAAc                                                                                         <  2:3115498/92‑1 (MQ=255)

       cccgcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAAcc                                                                                        <  2:1168422/93‑1 (MQ=255)

       cccgcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTaatc                                                                                        >  1:1780664/1‑91 (MQ=255)

       cccgcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTaatc                                                                                        <  2:6822845/93‑3 (MQ=255)

         cgcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCat                                                                                      <  1:5459689/93‑1 (MQ=255)

          gcAATGCCTGGGAACTTGTCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCata                                                                                     <  2:6352350/93‑1 (MQ=255)

          gcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCTCCGAGCAGCACAATAACAGTATCAACCata                                                                                     <  2:7190291/93‑1 (MQ=255)

          gcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCata                                                                                     <  1:39983/93‑1 (MQ=255)

          gcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCata                                                                                     <  1:6241166/93‑1 (MQ=255)

          gcAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCata                                                                                     <  2:7871106/93‑1 (MQ=255)

           cAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCatat                                                                                    <  1:8691466/93‑1 (MQ=255)

            aaTGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATc                                                                                   >  2:4011065/1‑93 (MQ=255)

              tGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACATAATAACAGCATTAATCATATCTa                                                                                 <  2:7390089/93‑1 (MQ=255)

              tGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATAATATCTa                                                                                 >  2:9360483/1‑93 (MQ=255)

                ccTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTAcc                                                                               >  2:1349938/1‑93 (MQ=255)

                 cTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTAccc                                                                              >  1:4522318/1‑93 (MQ=255)

                 cTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTAccc                                                                              >  2:2328435/1‑93 (MQ=255)

                  tGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCcg                                                                             >  2:5989461/1‑93 (MQ=255)

                  tGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCcg                                                                             >  1:4971908/1‑93 (MQ=255)

                  tGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCcg                                                                             >  2:3872690/1‑93 (MQ=255)

                   gggAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCcgc                                                                            <  1:1388086/93‑1 (MQ=255)

                     gAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCgcgc                                                                          <  2:1749137/93‑1 (MQ=255)

                       aCTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCAt                                                                        >  2:4864916/1‑93 (MQ=255)

                       aCTTGGCTTTAACCT‑GTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATc                                                                       <  1:4195805/93‑1 (MQ=255)

                        cTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATc                                                                       <  2:4619845/93‑1 (MQ=255)

                        cTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATc                                                                       >  1:6042999/1‑93 (MQ=255)

                        cTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATc                                                                       >  1:9390166/1‑93 (MQ=255)

                        cTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATc                                                                       >  1:760452/1‑93 (MQ=255)

                         ttGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCg                                                                      >  1:1236756/1‑93 (MQ=255)

                          tGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGc                                                                     <  1:8455631/93‑1 (MQ=255)

                           ggCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGcc                                                                    <  1:9631023/93‑1 (MQ=255)

                           ggCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGcc                                                                    <  1:1491746/93‑1 (MQ=255)

                            gCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGccc                                                                   <  2:5046222/93‑1 (MQ=255)

                            gCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGccc                                                                   <  1:3188270/93‑1 (MQ=255)

                             cTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACACGCGCATCGCCCg                                                                  >  1:528171/1‑93 (MQ=255)

                               ttAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCgtg                                                                <  1:10003588/93‑1 (MQ=255)

                               ttAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCgtg                                                                <  2:6645819/93‑1 (MQ=255)

                                tAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCgtgt                                                               >  1:3100770/1‑93 (MQ=255)

                                       gTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGc                                                        <  1:8065395/93‑1 (MQ=255)

                                        tGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCg                                                       >  2:9133919/1‑93 (MQ=255)

                                         gATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGt                                                      <  2:5176561/93‑1 (MQ=255)

                                          aTTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTg                                                     <  2:5822446/93‑1 (MQ=255)

                                          aTTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTg                                                     <  2:9807458/93‑1 (MQ=255)

                                            tGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTCCCCGCGCATCGCCCGTGTGCGTAGCGTGGa                                                   <  2:2605089/93‑1 (MQ=255)

                                            tGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGa                                                   <  1:3778475/93‑1 (MQ=255)

                                            tGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGa                                                   <  2:536827/93‑1 (MQ=255)

                                             gCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGaa                                                  >  1:5863317/1‑93 (MQ=255)

                                             gCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGaa                                                  >  2:7678937/1‑93 (MQ=255)

                                               cGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAaga                                                <  1:5126485/93‑1 (MQ=255)

                                                gAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAagag                                               <  2:8932677/93‑1 (MQ=255)

                                                gAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAagag                                               >  1:7445518/1‑93 (MQ=255)

                                                 aaGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAgaga                                              >  1:7794973/1‑93 (MQ=255)

                                                 aaGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAgaga                                              >  2:2202073/1‑93 (MQ=255)

                                                  aGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGAt                                             >  1:8601470/1‑93 (MQ=255)

                                                  aGACGCCTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGAt                                             >  2:4434369/1‑93 (MQ=255)

                                                   gACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATc                                            >  1:728082/1‑93 (MQ=255)

                                                     cGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑Ct                                         <  1:8867277/93‑1 (MQ=255)

                                                       ccTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATA‑Cttc                                       >  1:2215885/1‑91 (MQ=255)

                                                        cTGTAGTGCCGCCAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑Cttca                                      <  1:9535016/93‑4 (MQ=255)

                                                              tGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTCAACGCGtt                                >  2:2835908/1‑93 (MQ=255)

                                                              tGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTCAACGCGtt                                >  2:568770/1‑93 (MQ=255)

                                                               gccgccAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTa                               <  1:4755697/93‑1 (MQ=255)

                                                                ccgccAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATCTCTC‑ACGCGTTAt                              >  1:1891159/1‑93 (MQ=255)

                                                                    cAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGAtt                          <  1:1678454/93‑1 (MQ=255)

                                                                    cAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGAtt                          <  1:8223473/93‑1 (MQ=255)

                                                                    cAGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGAtt                          <  2:842906/93‑1 (MQ=255)

                                                                     aGCGCCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTACGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGAttt                         <  1:9183689/93‑1 (MQ=255)

                                                                      gcgcCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATTTa                        >  2:8080368/1‑93 (MQ=255)

                                                                      gcgcCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATTTa                        <  2:2499623/93‑1 (MQ=255)

                                                                       cgcCGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATTTAc                       <  2:5507015/93‑1 (MQ=255)

                                                                          cGAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCACGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATTTACATc                    <  1:2046010/93‑1 (MQ=255)

                                                                           gAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTCAACGCGTTATGATTTACATCg                   >  1:3403480/1‑93 (MQ=255)

                                                                           gAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATTTACATCg                   <  2:9597120/93‑1 (MQ=255)

                                                                           gAGCAACACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATTTACATCg                   >  1:115638/1‑93 (MQ=255)

                                                                            agcaacACAATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATTTACATCgg                  <  1:2758004/93‑1 (MQ=255)

                                                                              caacacaATAACAGCATTAATCATATCTACCCGCGCATCGCTCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATTTACATCGGTc                >  2:1593796/4‑93 (MQ=255)

                                                                              caacacaATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATTTACATCGGTc                >  1:9049440/4‑93 (MQ=255)

                                                                               agcaCAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTCAACGCGTTATGATTTACATCGGTCt               >  1:3562923/1‑93 (MQ=255)

                                                                                gcaCAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTCAACGCGTTATGATTTACATCGGTCTa              <  2:6463550/93‑1 (MQ=255)

                                                                                gcaCAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTCAACGCGTTATGATTTACATCGGTCTa              <  2:826655/93‑1 (MQ=255)

                                                                                acacaATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATTTACATCGGTCtg              >  1:2894448/2‑92 (MQ=255)

                                                                                 cacaATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATTTACATCGGTCtgc             <  2:726240/93‑3 (MQ=255)

                                                                                 cacaATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATTTACATCGGTCtgc             <  2:10027643/93‑3 (MQ=255)

                                                                                 cacaATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATTTACATCGGTCtgc             >  1:7025332/1‑91 (MQ=255)

                                                                                 cacaATAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATTTACATCGGTCtgc             <  2:328922/93‑3 (MQ=255)

                                                                                   caATAACAGTATCAACC‑TATCTACACGCGCCTCGCCCGTGGGCGTAGCGTCGAAAAGGTC‑CTCCAACCGTTATGGTTTACCTCGGGCTccccc          >  2:4292852/1‑91 (MQ=255)

                                                                                    aaTAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATGTACATCGGTCTGCCGc          >  2:3518959/1‑93 (MQ=255)

                                                                                     aTAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATTTACATCGGTCTGCCGCa         >  1:4316557/1‑93 (MQ=255)

                                                                                      tAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTCAACGCGTTATGATTTACATCGGTCTACCGCaa        <  1:4636294/93‑1 (MQ=255)

                                                                                      tAACAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAaga                                                <  2:2984393/54‑1 (MQ=255)

                                                                                       aaCAGTATCAACCATATCTCCCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTCAACGCGTTATGATTTACATCGGTCTACCGCAAt       <  1:6773302/93‑1 (MQ=255)

                                                                                        aCAGTATCAACCATATCTACCCGCGCATCGCCCGTGCGCGTAGCGTGGAAGAGATC‑CTCAACGCGTTATGATTTACATCGGTCTACCGCAATg      >  1:9890585/1‑93 (MQ=255)

                                                                                        aCAGCATTAATCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTTCACGCGTTATGATTTACATCGGTCTGCCGCAATg      <  2:8663748/93‑1 (MQ=255)

                                                                                         cAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTCAACGCGTTATGATTTACATCGGTCTACCGCAATgg     <  2:1948050/93‑1 (MQ=255)

                                                                                         cAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTCAACGCGTTATGATTTACATCGGTCTACCGCAATgg     >  1:5676668/1‑93 (MQ=255)

                                                                                          aGTATCAACCATATCTACCCGCCCAGCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGt    <  1:6464494/93‑1 (MQ=255)

TCCACCGCCCGCAATGCCTGGGAACTTGGCTTTAATCTGGTGATTGCCGAAGACGCCTGTAGTGCCGCCAGCGCCGAGCAGCACAATAACAGTATCAACCATATCTACCCGCGCATCGCCCGTGTGCGTAGCGTGGAAGAGATC‑CTCAACGCGTTATGATTTACATCGGTCTACCGCAATGGTCG  >  NC_000913/1949264‑1949448

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`