BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,847,877	0	G	A	67.0%	603.6 / inf	424	A159A (GCC→GCT)	uhpA	UhpA
Reads supporting (aligned to +/- strand): ref base G (69/71); new base A (111/173); total (180/244)
Fisher's exact test for biased strand distribution p-value = 4.79e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.54e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 460 total aligned reads displayed.

GCGCCAGCTCTACGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTGACGACCGGATGCCAGTT  >  NC_000913/3847786‑3847968

gcgcCAGCTCTACGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTcggcgg                                                                                            >  2:6981851/1‑93 (MQ=255)

gcgcCAGCTCTACGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTcggcgg                                                                                            >  2:5493052/1‑93 (MQ=255)

 cgcCAGCTCTACGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTAACGTTTTCGGTGACAAGACCAGTTCggctgc                                                                                           >  1:3855269/1‑93 (MQ=255)

      gCTCTACGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGCCAAGCCCGGTTCGgcagcactat                                                                                      >  2:7673956/1‑89 (MQ=255)

      gCTCTACGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAAtct                                                                                      >  1:3144120/1‑93 (MQ=255)

      gCTCTACGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAAtct                                                                                      >  1:9541155/1‑93 (MQ=255)

       ctctACGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAAtctc                                                                                     <  1:9754480/93‑1 (MQ=255)

        tctACGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATctct                                                                                    >  2:467834/1‑93 (MQ=255)

         ctACGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCtt                                                                                   <  2:1539951/93‑1 (MQ=255)

         ctACGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCtt                                                                                   >  1:1423573/1‑93 (MQ=255)

         ctACGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCtt                                                                                   >  2:3713941/1‑93 (MQ=255)

          tACGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCttt                                                                                  >  1:7766968/1‑93 (MQ=255)

          tACGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCttt                                                                                  <  1:5097309/93‑1 (MQ=255)

          tACGTCGTTACTGACGCCCAGNTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCttt                                                                                  <  1:7951476/93‑1 (MQ=255)

           aCGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTc                                                                                 >  2:4793491/1‑93 (MQ=255)

           aCGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTc                                                                                 <  1:3657120/93‑1 (MQ=255)

           aCGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTc                                                                                 <  1:2003294/93‑1 (MQ=255)

            cgtcgtTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCa                                                                                <  2:6442516/93‑1 (MQ=255)

             gtcgtTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCAc                                                                               >  1:2634850/1‑93 (MQ=255)

             gtcgtTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCAc                                                                               <  1:467832/93‑1 (MQ=255)

              tcgtTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCAcc                                                                              >  1:6349039/1‑93 (MQ=255)

              tcgtTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCAcc                                                                              <  2:5692984/93‑1 (MQ=255)

                 ttACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGcc                                                                           >  2:164523/1‑93 (MQ=255)

                 ttACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGcc                                                                           >  1:3014959/1‑93 (MQ=255)

                  tACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCa                                                                          <  1:2269051/93‑1 (MQ=255)

                  tACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCa                                                                          <  1:8375007/93‑1 (MQ=255)

                    cTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCAtt                                                                        >  2:9768384/1‑93 (MQ=255)

                    cTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCAtt                                                                        >  2:4391470/1‑93 (MQ=255)

                     tGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTc                                                                       >  1:397088/1‑93 (MQ=255)

                      gACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGGCAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTcc                                                                      >  1:6977793/1‑93 (MQ=255)

                      gACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTcc                                                                      <  1:6321068/93‑1 (MQ=255)

                       aCGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCt                                                                     <  2:2717714/93‑1 (MQ=255)

                         gCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTg                                                                   >  2:2970806/1‑93 (MQ=255)

                           ccAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTgcg                                                                 >  2:2371397/1‑93 (MQ=255)

                           ccAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTgcg                                                                 <  2:519014/93‑1 (MQ=255)

                            cAGTTTTTCCAAAAGATTGGCGCCATTGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTgcgc                                                                <  1:325186/93‑1 (MQ=255)

                             aGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGcc                                                               >  1:9300086/1‑93 (MQ=255)

                                 tttCCATCAGATTGGCACGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGtt                                                           <  1:5802646/93‑1 (MQ=255)

                                  ttCCATCAGATTGGCGCGATGCACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCATCGCCATTCCTTGCGCCAGttt                                                          <  2:9865455/93‑1 (MQ=255)

                                   tCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGtttt                                                         >  1:9923369/1‑93 (MQ=255)

                                     cATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCCCCGCCATTCCTTGCGCCAGTTTTTc                                                       <  2:8117467/93‑1 (MQ=255)

                                      aTCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTcc                                                      <  1:2539576/93‑1 (MQ=255)

                                       tCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCg                                                     >  1:893187/1‑93 (MQ=255)

                                       tCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCg                                                     >  1:616264/1‑93 (MQ=255)

                                       tCAGATTGGCGCGATGGACGTGTAACGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCg                                                     >  2:1226540/1‑93 (MQ=255)

                                         aGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGcc                                                   <  1:8891803/93‑1 (MQ=255)

                                          gATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCa                                                  <  1:7915342/93‑1 (MQ=255)

                                          gATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCa                                                  >  1:7361918/1‑93 (MQ=255)

                                           aTTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCAc                                                 >  1:1139400/1‑93 (MQ=255)

                                           aTTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCAc                                                 <  1:2326132/93‑1 (MQ=255)

                                            ttGGCGCGCTGGCCGGCTCCCTTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCAcc                                                <  2:4513641/93‑1 (MQ=255)

                                             tGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCt                                               <  1:9179622/93‑1 (MQ=255)

                                             tGGCGCGATGGACGGGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCt                                               <  1:1597021/93‑1 (MQ=255)

                                              ggCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTg                                              <  2:1117139/93‑1 (MQ=255)

                                               gcgcGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTgg                                             <  1:8251969/93‑1 (MQ=255)

                                                ggcgATGGACGTGTACCGTTTTCGGTTACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGc                                            <  1:5413119/92‑1 (MQ=255)

                                                  cgATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGt                                          <  2:418773/93‑1 (MQ=255)

                                                   gATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGtt                                         >  2:6224565/1‑93 (MQ=255)

                                                   gATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGtt                                         >  2:8364501/1‑93 (MQ=255)

                                                    aTGGACGTGTCCCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTc                                        <  2:288996/93‑1 (MQ=255)

                                                     tGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCa                                       <  1:438426/93‑1 (MQ=255)

                                                       gACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACg                                     >  1:5632272/1‑93 (MQ=255)

                                                           tgtACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTg                                 >  2:6863070/1‑93 (MQ=255)

                                                           tgtACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTg                                 >  2:9252333/1‑93 (MQ=255)

                                                           tgtACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTg                                 >  1:8604203/1‑93 (MQ=255)

                                                           tgtACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTg                                 >  2:7822225/1‑93 (MQ=255)

                                                             tACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGt                               <  1:4267246/93‑1 (MQ=255)

                                                             tACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGt                               >  2:6667228/1‑93 (MQ=255)

                                                             tACCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGt                               >  1:1848198/1‑93 (MQ=255)

                                                              tccGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGtt                              <  2:7483134/92‑1 (MQ=255)

                                                              aCCGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGtt                              <  2:8667606/93‑1 (MQ=255)

                                                               ccGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCTGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTa                             >  2:6254553/1‑93 (MQ=255)

                                                               ccGTTTTCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTa                             <  1:267640/93‑1 (MQ=255)

                                                                  ttttCGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCg                          >  2:343949/1‑93 (MQ=255)

                                                                      cGGTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTc                      <  2:8457218/93‑1 (MQ=255)

                                                                       ggTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTcc                     <  1:3698646/93‑1 (MQ=255)

                                                                       ggTGACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTcc                     <  2:3115340/93‑1 (MQ=255)

                                                                        gTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCt                    <  2:3849797/93‑1 (MQ=255)

                                                                         tGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTg                   >  2:8758189/1‑93 (MQ=255)

                                                                          gACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTga                  <  2:716150/93‑1 (MQ=255)

                                                                          gACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTga                  >  1:3216625/1‑93 (MQ=255)

                                                                          gACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTga                  <  1:7452706/93‑1 (MQ=255)

                                                                          gACAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTga                  <  1:5981730/93‑1 (MQ=255)

                                                                           aCAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTgac                 >  1:10022687/1‑93 (MQ=255)

                                                                           aCAAGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTgac                 >  1:5007235/1‑93 (MQ=255)

                                                                             aaGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTgacga               >  1:4798745/1‑93 (MQ=255)

                                                                              accccAGTTGGGCAGCATTTTCTTGCA‑CGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCTTTCGCGTTGGGTTGTCGGGTCCTGGCGAcc             <  2:6101224/91‑1 (MQ=255)

                                                                              aGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTgacgac              >  1:3341976/1‑93 (MQ=255)

                                                                              aGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTgacgac              <  2:4952123/93‑1 (MQ=255)

                                                                              aGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTgacgac              <  2:2560081/93‑1 (MQ=255)

                                                                              aGCCCAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTgacgac              <  2:10034067/93‑1 (MQ=255)

                                                                                 ccAGTTCGGCGGCAATCTCTTTAACCGCCATTCCTTGCGCCAGATTTTCCGCCACCTGGCGTTCACGTTTGGTTAGAGGGTCCTGACGACCgg           >  2:5855955/1‑93 (MQ=255)

                                                                                  cAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTGACGACCGGa          <  1:1748888/93‑1 (MQ=255)

                                                                                  cAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTGACGACCGGa          <  2:2046415/93‑1 (MQ=255)

                                                                                  cAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTGACGACCGGa          <  2:9633924/93‑1 (MQ=255)

                                                                                  cAGTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTGACGACCGGa          <  1:6591618/93‑1 (MQ=255)

                                                                                    gTTCGGCAGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTGACGACCGGATg        >  2:7542772/1‑93 (MQ=255)

                                                                                      tCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTGACGACCGGATGcc      >  2:9101154/1‑93 (MQ=255)

                                                                                      tCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTGACGACCGGATGcc      >  2:9436720/1‑93 (MQ=255)

                                                                                        ggcggcAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTGACGACCGGATGCCAg    <  1:6862662/93‑1 (MQ=255)

GCGCCAGCTCTACGTCGTTACTGACGCCCAGTTTTTCCATCAGATTGGCGCGATGGACGTGTACCGTTTTCGGTGACAAGCCCAGTTCGGCGGCAATCTCTTTCACCGCCATTCCTTGCGCCAGTTTTTCCGCCACCTGGCGTTCACGTTTGGTTAGCGGGTCCTGACGACCGGATGCCAGTT  >  NC_000913/3847786‑3847968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`