BRESEQ :: Evidence

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,117,363	0	G	A	66.9%	525.7 / inf	393	C189C (TGC→TGT)	menA	MenA
Reads supporting (aligned to +/- strand): ref base G (65/65); new base A (137/126); total (202/191)
Fisher's exact test for biased strand distribution p-value = 7.48e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.47e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 411 total aligned reads displayed.

GCGCACCACCAGCGTGTTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCAAAGAAAACCAG  >  NC_000913/4117273‑4117455

  gcACCACCAGCGTGTTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCCGCAGGCCACATg                                                                                          >  1:6264829/1‑93 (MQ=255)

  gcACCACCAGCGTGTTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATg                                                                                          >  1:551615/1‑93 (MQ=255)

   caccacCAGCGTTTTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGc                                                                                         <  1:4030783/93‑1 (MQ=255)

   caccacCAGCGTGTTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGc                                                                                         <  1:2368868/93‑1 (MQ=255)

    accaccAGCGTGTTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCg                                                                                        <  1:4735892/93‑1 (MQ=255)

     ccaccaGCGTGTTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCgg                                                                                       <  2:7547743/93‑1 (MQ=255)

      caccaGCGTGTTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGt                                                                                      <  1:9965408/93‑1 (MQ=255)

         caGCGTGTTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGc                                                                                   >  1:3177541/1‑93 (MQ=255)

          cgCGTGTTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGcc                                                                                  <  2:2299384/92‑1 (MQ=255)

          aGCGTGTTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGcc                                                                                  <  1:762806/93‑1 (MQ=255)

          aGCGTGTTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGcc                                                                                  >  2:8656876/1‑93 (MQ=255)

             gtgtTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGa                                                                               >  1:4919543/1‑93 (MQ=255)

             gtgtTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGa                                                                               >  2:840655/1‑93 (MQ=255)

              tgtTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGaa                                                                              >  2:4118356/1‑93 (MQ=255)

              tgtTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGaa                                                                              <  2:8055972/93‑1 (MQ=255)

               gtTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAg                                                                             >  2:9006847/1‑93 (MQ=255)

               gtTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAg                                                                             >  1:1730108/1‑93 (MQ=255)

                tttttGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAgg                                                                            <  2:7357963/93‑1 (MQ=255)

                 ttttGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGa                                                                           >  2:1519250/1‑93 (MQ=255)

                 ttttGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGa                                                                           <  1:8349222/93‑1 (MQ=255)

                   ttGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATc                                                                         >  2:6898374/1‑93 (MQ=255)

                   ttGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATc                                                                         <  1:6429745/93‑1 (MQ=255)

                    tGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCa                                                                        >  2:4028771/1‑93 (MQ=255)

                    tGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCa                                                                        <  1:9714149/93‑1 (MQ=255)

                     gCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAg                                                                       >  1:4096846/1‑93 (MQ=255)

                     gCCATTTTCGCGGTCGCTATTGATATCACGCAGATTATTAATATTCAGTACTGCAGTTGCCAGCAGGACACATGCGGTCGCAGGATGGCTCAg                                                                       <  2:9215016/93‑1 (MQ=255)

                      ccATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGt                                                                      <  1:1430925/93‑1 (MQ=255)

                        aTTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGc                                                                    >  1:3859818/1‑93 (MQ=255)

                         ttttCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGcc                                                                   >  1:7433445/1‑93 (MQ=255)

                         ttttCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGcc                                                                   >  2:7081569/1‑93 (MQ=255)

                          tttCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCg                                                                  <  2:2456514/93‑1 (MQ=255)

                                     cTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTa                                                       >  1:2059086/1‑93 (MQ=255)

                                     cTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTa                                                       >  2:268656/1‑93 (MQ=255)

                                     cTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTa                                                       >  1:5218731/1‑93 (MQ=255)

                                     cTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTa                                                       <  2:1090215/93‑1 (MQ=255)

                                       aTTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATg                                                     >  1:604208/1‑93 (MQ=255)

                                        ttGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGa                                                    >  1:4541597/1‑93 (MQ=255)

                                         tGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAg                                                   <  1:1263386/93‑1 (MQ=255)

                                           atatCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGcc                                                 <  2:5948268/93‑1 (MQ=255)

                                           atatCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGcc                                                 >  2:1368989/1‑93 (MQ=255)

                                           atatCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAACAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGcc                                                 >  2:3596305/1‑93 (MQ=255)

                                            tatCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCt                                                >  2:9767718/1‑93 (MQ=255)

                                             atCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTg                                               <  1:323598/93‑1 (MQ=255)

                                              tCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGt                                              <  1:2689538/93‑1 (MQ=255)

                                                aCGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTaa                                            <  1:4386208/93‑1 (MQ=255)

                                                 cGCAGGTTATTAATATTCAGTACTGCCGTTGCGAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTaaa                                           <  2:6391883/93‑1 (MQ=255)

                                                  gCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAAt                                          <  2:6624803/93‑1 (MQ=255)

                                                   cAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATa                                         >  2:6485276/1‑93 (MQ=255)

                                                    aGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATAc                                        >  2:3290706/1‑93 (MQ=255)

                                                     ggTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATAcc                                       >  1:814825/1‑93 (MQ=255)

                                                     ggTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATAcc                                       >  2:671674/1‑93 (MQ=255)

                                                      gTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCa                                      <  1:6807796/93‑1 (MQ=255)

                                                         attaATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCt                                   >  1:8271163/1‑93 (MQ=255)

                                                         attaATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCt                                   >  2:5828155/1‑93 (MQ=255)

                                                         attaATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCt                                   >  2:2240648/1‑93 (MQ=255)

                                                         attaATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCt                                   <  1:6382870/93‑1 (MQ=255)

                                                          ttaATATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTc                                  >  2:3840067/1‑93 (MQ=255)

                                                           taATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTcc                                 >  2:2759851/1‑93 (MQ=255)

                                                            aaTATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTccc                                >  1:9601624/1‑93 (MQ=255)

                                                            aaTATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTccc                                >  2:9516503/1‑93 (MQ=255)

                                                            aaTATTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTccc                                <  1:9358955/93‑1 (MQ=255)

                                                              tatTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCa                              >  1:7963624/1‑93 (MQ=255)

                                                              tatTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCa                              >  1:9882798/1‑93 (MQ=255)

                                                              tatTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCa                              >  2:3421724/1‑93 (MQ=255)

                                                              tatTCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCa                              <  1:913076/93‑1 (MQ=255)

                                                               atTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCAt                             >  2:2977154/1‑93 (MQ=255)

                                                                ttCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATg                            <  1:8615425/93‑1 (MQ=255)

                                                                 tCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGa                           <  1:4616103/93‑1 (MQ=255)

                                                                 tCAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGa                           >  1:567112/1‑93 (MQ=255)

                                                                 tCAGTACTGCCGTTGCCAGCAGGCCACATGAGGTCGCCGGAAGCATCAGTGCCGGACTCAATGTATGAGCCTGTAAATCCCAGCTCCCCATgc                           <  2:4398534/93‑2 (MQ=255)

                                                                  cAGTACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGac                          >  1:3649668/1‑93 (MQ=255)

                                                                    gTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGacac                        <  1:3367117/93‑1 (MQ=255)

                                                                     tACTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACt                       >  2:5345683/1‑93 (MQ=255)

                                                                      aCTGCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTc                      <  2:540749/93‑1 (MQ=255)

                                                                       cTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCa                     <  1:3434728/93‑1 (MQ=255)

                                                                         gCCGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAAc                   <  2:4954742/93‑1 (MQ=255)

                                                                          ccGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAAcc                  <  2:3619679/93‑1 (MQ=255)

                                                                          ccGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAAcc                  <  2:5203844/93‑1 (MQ=255)

                                                                          ccGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAAcc                  >  2:5897457/1‑93 (MQ=255)

                                                                           cGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCa                 <  2:2070205/93‑1 (MQ=255)

                                                                           cGTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCa                 <  1:5114133/93‑1 (MQ=255)

                                                                            gTTGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAg                >  2:6187589/1‑93 (MQ=255)

                                                                             ttGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGc               >  2:1220388/1‑93 (MQ=255)

                                                                             ttGCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGc               <  1:1889774/93‑1 (MQ=255)

                                                                             ctGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGc               <  2:9324133/92‑1 (MQ=255)

                                                                               gCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCa             >  2:4730911/1‑93 (MQ=255)

                                                                               gCCAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCa             <  1:7339616/93‑1 (MQ=255)

                                                                                ccAGCAGGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCaa            >  1:5841367/1‑93 (MQ=255)

                                                                                 cagcagGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCaaa           >  2:8871814/1‑93 (MQ=255)

                                                                                  agcagGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCAAAg          <  1:3597267/93‑1 (MQ=255)

                                                                                  agcagGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCAAAg          <  1:8874074/93‑1 (MQ=255)

                                                                                   gcagGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCAAAGa         >  2:4526749/1‑93 (MQ=255)

                                                                                    cagGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCAAAGaa        <  1:5365123/93‑1 (MQ=255)

                                                                                    cagGCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCAAAGaa        >  2:5599036/1‑93 (MQ=255)

                                                                                      ggCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCAAAGaaaa      <  1:6632294/93‑1 (MQ=255)

                                                                                      ggCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCAAAGaaaa      >  1:7184549/1‑93 (MQ=255)

                                                                                      ggCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCAAAGaaaa      <  1:10005388/93‑1 (MQ=255)

                                                                                       gCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCAAAGAAAAc     >  1:2890376/1‑93 (MQ=255)

                                                                                       gCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCAAAGAAAAc     >  1:9509904/1‑93 (MQ=255)

                                                                                       gCCACATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCAAAGAAAAc     <  1:1169716/93‑1 (MQ=255)

GCGCACCACCAGCGTGTTTTTGCCATTTTCGCGGTCGCTATTGATATCACGCAGGTTATTAATATTCAGTACTGCCGTTGCCAGCAGGCCGCATGCGGTCGCCGGAAGGATCAGTGCCGGAATCAATGTATGAGCCTGTAAATACCAGCTCCCCATGACACTCAACCAGCCAAAGAAAACCAG  >  NC_000913/4117273‑4117455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`