BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,860,862	T→C	A123A (GCA→GCG)	b4553 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,860,862	0	T	C	100.0%	1263.7 / NA	392	A123A (GCA→GCG)	b4553	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (211/181); total (211/181)

Only 100 of 409 total aligned reads displayed.

AGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCTGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTCAC  >  NC_000913/3860773‑3860954

aGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGcc                                                                                           >  2:6662764/1‑93 (MQ=255)

 gcgcCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCa                                                                                          >  1:100663/1‑93 (MQ=255)

     cGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACcgc                                                                                      >  1:7702307/1‑93 (MQ=255)

     cGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACcgc                                                                                      >  1:6137647/1‑93 (MQ=255)

      gTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACcgcg                                                                                     >  2:1769787/1‑93 (MQ=255)

      gTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACcgcg                                                                                     <  1:3917530/93‑1 (MQ=255)

       tCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACcgcgc                                                                                    >  1:260663/1‑92 (MQ=255)

        cacaATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTCCCCGCCACCGCGTc                                                                                   <  1:8699622/93‑1 (MQ=255)

         acaATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTcc                                                                                  >  2:2295018/1‑93 (MQ=255)

               ccGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTg                                                                            <  1:4105045/93‑1 (MQ=255)

                cGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGa                                                                           >  2:4918510/1‑93 (MQ=255)

                cGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGa                                                                           <  1:2875770/93‑1 (MQ=255)

                cGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGa                                                                           <  2:6198495/93‑1 (MQ=255)

                 ggAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGaa                                                                          <  2:5961726/93‑1 (MQ=255)

                 ggAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGaa                                                                          >  2:6968719/1‑93 (MQ=255)

                  gAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGaaa                                                                         >  2:9706000/1‑93 (MQ=255)

                   aaaTGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAAt                                                                        >  1:244956/1‑93 (MQ=255)

                   aaaTGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAAt                                                                        <  2:2566425/93‑1 (MQ=255)

                      tGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGa                                                                     <  2:3307866/93‑1 (MQ=255)

                      tGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGa                                                                     >  2:9483890/1‑93 (MQ=255)

                      tGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGa                                                                     <  1:5361338/93‑1 (MQ=255)

                      tGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGa                                                                     <  2:7890323/93‑1 (MQ=255)

                      tGATAATCGCGCGGATAGTGCTGGTATCGAGTGTTTTAGTCCCGACAATCATTGTCAGTCCGCTACCCGCCACCTCGTCCTGAGTGAAATCGa                                                                     <  2:6369055/93‑1 (MQ=255)

                       taTAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGAc                                                                    <  1:5559211/92‑1 (MQ=255)

                        aTAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACg                                                                   >  1:9396806/1‑93 (MQ=255)

                        aTAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACg                                                                   >  2:4438975/1‑93 (MQ=255)

                         tAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGc                                                                  <  1:3227678/93‑1 (MQ=255)

                           aTTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGCGTGAAATCGACGCCg                                                                >  1:3326/1‑93 (MQ=255)

                            ttGCGCCGATAATGCTGGTATCGAGGGGTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCACGTCCTGAGTGAAATTCACGCCGa                                                               >  1:6403663/1‑93 (MQ=255)

                              gcgcCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAg                                                             >  2:3906589/1‑93 (MQ=255)

                              gcgcCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAg                                                             <  1:1920584/93‑1 (MQ=255)

                                gcCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTa                                                           >  1:9548991/1‑93 (MQ=255)

                                gcCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTa                                                           <  1:2318172/93‑1 (MQ=255)

                                gcCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTa                                                           >  2:2006551/1‑93 (MQ=255)

                                 ccGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAg                                                          >  2:7353196/1‑93 (MQ=255)

                                   gATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCt                                                        <  1:3539980/93‑1 (MQ=255)

                                    aTAATGCTGGTATCGAGGGATTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAACTAGCtt                                                       >  1:2757383/1‑93 (MQ=255)

                                     tAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTc                                                      >  1:2097008/1‑93 (MQ=255)

                                     tAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTc                                                      >  2:2967266/1‑93 (MQ=255)

                                     tAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTc                                                      >  1:7407329/1‑93 (MQ=255)

                                      aaTGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTcc                                                     >  1:4193981/1‑93 (MQ=255)

                                       aTGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTccc                                                    <  2:6855652/93‑1 (MQ=255)

                                        agCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTcccc                                                   <  1:3039253/92‑1 (MQ=255)

                                         gCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCa                                                  <  1:1309163/93‑1 (MQ=255)

                                          cTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAg                                                 <  1:51548/93‑1 (MQ=255)

                                          cTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAg                                                 >  2:3406383/1‑93 (MQ=255)

                                          cTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAg                                                 <  2:857645/93‑1 (MQ=255)

                                          cTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAg                                                 <  2:8705606/93‑1 (MQ=255)

                                            ggTATCGATGGTTTTAAGCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGt                                               <  2:1336611/93‑1 (MQ=255)

                                              tATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCa                                             <  2:3644863/93‑1 (MQ=255)

                                              tATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCa                                             <  2:1025586/93‑1 (MQ=255)

                                              tATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCa                                             <  2:1287986/93‑1 (MQ=255)

                                               aTCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTCCGCCAGGTAAt                                            >  1:8523324/1‑93 (MQ=255)

                                                tCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCAtt                                           >  2:2878302/1‑93 (MQ=255)

                                                tCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCAtt                                           >  1:5003288/1‑93 (MQ=255)

                                                tCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCAtt                                           >  1:460823/1‑93 (MQ=255)

                                                tCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCAtt                                           >  1:3093851/1‑93 (MQ=255)

                                                 cGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTc                                          >  2:4813661/1‑93 (MQ=255)

                                                 cGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTc                                          >  1:4791012/1‑93 (MQ=255)

                                                  gAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTcc                                         >  2:4130903/1‑93 (MQ=255)

                                                  gAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTcc                                         >  2:7034023/1‑93 (MQ=255)

                                                  gAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTcc                                         >  2:9009486/1‑93 (MQ=255)

                                                  gAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTcc                                         >  1:1083779/1‑93 (MQ=255)

                                                  gAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTcc                                         <  2:1860033/93‑1 (MQ=255)

                                                  gAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTcc                                         >  1:7247028/1‑93 (MQ=255)

                                                   aGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTccc                                        >  2:8461350/1‑93 (MQ=255)

                                                    gggTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCa                                       >  1:6988878/1‑93 (MQ=255)

                                                    gggTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCa                                       <  1:9091725/93‑1 (MQ=255)

                                                     ggTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCAt                                      >  2:5477798/1‑93 (MQ=255)

                                                      gTTTTAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATc                                     <  1:165367/93‑1 (MQ=255)

                                                        tttAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATcgc                                   <  1:6493778/93‑1 (MQ=255)

                                                          tAATCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGt                                 >  2:2739494/1‑93 (MQ=255)

                                                           aaTCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGtt                                <  1:4268316/93‑1 (MQ=255)

                                                             tCCCGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtga                              >  1:7938188/1‑93 (MQ=255)

                                                               ccGGCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTtgatg                            >  1:5954367/1‑93 (MQ=255)

                                                                 ggCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGaa                          >  1:4898853/1‑93 (MQ=255)

                                                                  gCCATCATTGTCGGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTCCCCCAGGTCATTCCCATCGCGTTGATGaaa                         <  2:5767376/93‑1 (MQ=255)

                                                                  gCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGaaa                         <  1:1533681/93‑1 (MQ=255)

                                                                  gCCATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGaaa                         <  1:9831162/93‑1 (MQ=255)

                                                                   ccATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAAt                        <  1:7513499/93‑1 (MQ=255)

                                                                   ccATCATTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAAt                        <  2:372343/93‑1 (MQ=255)

                                                                    catcatTGTCAGACCGCTGCCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATa                       <  2:8045102/93‑1 (MQ=255)

                                                                     atcatTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATat                      >  2:7594062/1‑92 (MQ=255)

                                                                     atcatTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAg                      <  1:4421242/93‑1 (MQ=255)

                                                                       catTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGtt                    <  2:5303649/93‑1 (MQ=255)

                                                                       catTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCACATCGCGTTGATGAAATAGtt                    <  1:6903214/93‑1 (MQ=255)

                                                                        atTGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTc                   >  2:5137536/1‑93 (MQ=255)

                                                                         ttGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTAATAAAATCGTTcc                  >  1:7151202/1‑93 (MQ=255)

                                                                          tGTCAGACCGCTACCCGCCACCGGGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCa                 <  2:5561227/93‑1 (MQ=255)

                                                                          tGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCa                 <  1:9961798/93‑1 (MQ=255)

                                                                          tGTCAGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCa                 <  1:5684833/93‑1 (MQ=255)

                                                                              aGACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTc             <  2:9568823/93‑1 (MQ=255)

                                                                               gACCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCa            <  1:9764861/93‑1 (MQ=255)

                                                                                aCCGCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAg           <  1:9311604/93‑1 (MQ=255)

                                                                                   gCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGaa        >  1:1194279/1‑93 (MQ=255)

                                                                                   gCTACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGaa        >  2:2161116/1‑93 (MQ=255)

                                                                                     tACCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAAc      >  2:1588965/1‑93 (MQ=255)

                                                                                      aCCCGCCACCGCTTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACt     <  2:361214/93‑1 (MQ=255)

                                                                                      aCCCGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACt     >  2:5906639/1‑93 (MQ=255)

                                                                                         tGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTCAc  <  2:9271604/93‑1 (MQ=255)

AGCGCCGTCACAATGCCGGAAATGATAATTGCGCCGATAATGCTGGTATCGAGGGTTTTAATCCCGGCCATCATTGTCAGACCGCTACCTGCCACCGCGTCCTGAGTGAAATCGACGCCGAAGTAGCTTCCCCAGGTCATTCCCATCGCGTTGATGAAATAGTTCCAGGTCAGGAAACTCAC  >  NC_000913/3860773‑3860954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`