BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	564,469	G→A	R245C (CGC→TGC)	intD ←	prophage DLP12 integrase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	564,469	0	G	A	100.0%	1379.8 / NA	376	R245C (CGC→TGC)	intD	prophage DLP12 integrase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (193/183); total (193/183)

Only 100 of 394 total aligned reads displayed.

TGGTATGTACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTC  >  NC_000913/564379‑564558

tGGTATGTACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGt                                                                                         >  2:9528449/1‑93 (MQ=255)

tGGTATGTACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGt                                                                                         >  1:4087333/1‑93 (MQ=255)

 ggTATGTACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGtt                                                                                        <  2:2263349/93‑1 (MQ=255)

 ggTATGTACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGtt                                                                                        <  2:4502257/93‑1 (MQ=255)

  gTATGTACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGttt                                                                                       >  1:3675537/1‑93 (MQ=255)

   tATGTACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTg                                                                                      >  2:8511242/1‑93 (MQ=255)

     tGTACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCTACACCAATGGCGCAGTTTGAt                                                                                    <  2:9214141/93‑1 (MQ=255)

     tGTACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGAt                                                                                    >  2:1053953/1‑93 (MQ=255)

     tGTACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGAt                                                                                    >  1:1890163/1‑93 (MQ=255)

     tGTACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGAt                                                                                    >  2:2921226/1‑93 (MQ=255)

     tGTACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGAt                                                                                    >  1:3281621/1‑93 (MQ=255)

      gTACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGAtt                                                                                   <  1:639993/93‑1 (MQ=255)

      gTACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGAtt                                                                                   <  2:6845417/93‑1 (MQ=255)

      atACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACTCTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGAtt                                                                                   <  1:3615265/92‑1 (MQ=255)

       tACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGAttt                                                                                  >  1:8455254/1‑93 (MQ=255)

        aCAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTg                                                                                 >  1:7028129/1‑93 (MQ=255)

        aCAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTg                                                                                 >  2:628872/1‑93 (MQ=255)

         cAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGc                                                                                >  2:8260028/1‑93 (MQ=255)

         cAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGc                                                                                >  1:9192309/1‑93 (MQ=255)

          aaaCACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGct                                                                               >  2:9044695/1‑93 (MQ=255)

           aaCACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGctc                                                                              <  1:4733668/93‑1 (MQ=255)

            acacCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGctct                                                                             <  2:2390060/93‑1 (MQ=255)

             ctcccATTGGTGCTGGTTCCCTATTTTATCACGAATCAGTTTCCAGGCTGTCTCGTGCAGCGCCACACCAATGGAGCAGTTTGATTTGctctc                                                                            <  1:4195386/91‑1 (MQ=255)

             cacCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGctctc                                                                            <  1:7230627/93‑1 (MQ=255)

                ccATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCtcttc                                                                         >  2:5784216/1‑93 (MQ=255)

                 cATTTGGGAGGCTTTGCTATTTGATCACGCAACACTGTACAGGCGGTAGCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCtcttct                                                                        <  2:89592/93‑1 (MQ=255)

                  aTTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTg                                                                       <  2:2849445/93‑1 (MQ=255)

                   tttGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTgg                                                                      >  1:6670513/1‑93 (MQ=255)

                   tttGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTgg                                                                      >  1:23442/1‑93 (MQ=255)

                    ttGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGa                                                                     <  1:1044255/93‑1 (MQ=255)

                    ttGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGa                                                                     <  2:8132955/93‑1 (MQ=255)

                      gtgATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGAtt                                                                   >  2:7111734/1‑93 (MQ=255)

                       tgATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTc                                                                  <  1:5625925/93‑1 (MQ=255)

                           gCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCAccc                                                              <  1:3933961/93‑1 (MQ=255)

                           gCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCAccc                                                              <  2:3625840/93‑1 (MQ=255)

                           gCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCAccc                                                              <  1:5432390/93‑1 (MQ=255)

                           gCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCAccc                                                              >  2:3876480/1‑93 (MQ=255)

                            cTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCa                                                             <  2:8821409/93‑1 (MQ=255)

                                 cTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCaa                                                        <  2:9658786/93‑1 (MQ=255)

                                 cTATTTGATCACGCAACACGTTACAGGCGGTATCGTTCAGCGCCACTCCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCaa                                                        <  1:8794024/93‑1 (MQ=255)

                                  tATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCaat                                                       >  1:5356594/1‑92 (MQ=255)

                                  tATTTGATCACGAAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAAc                                                       <  2:5887635/93‑1 (MQ=255)

                                   aTTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACt                                                      >  2:7923254/1‑93 (MQ=255)

                                    tttGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACtc                                                     >  2:9139740/1‑93 (MQ=255)

                                    tttGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACtc                                                     >  2:5656418/1‑93 (MQ=255)

                                        aTCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACtcgtcg                                                 >  1:4305729/1‑93 (MQ=255)

                                          cACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCt                                               >  2:2775663/1‑93 (MQ=255)

                                             gCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCa                                            <  2:2621755/93‑1 (MQ=255)

                                                acacTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGt                                         >  2:2062541/1‑93 (MQ=255)

                                                acacTTTACAGGCGGTATCGTTCAGCACCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGt                                         <  2:5184523/93‑1 (MQ=255)

                                                   cTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGa                                      <  2:5553552/93‑1 (MQ=255)

                                                    tttACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGAt                                     <  1:9714266/93‑1 (MQ=255)

                                                    tttACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGAt                                     <  1:7501805/93‑1 (MQ=255)

                                                     ttACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGAtt                                    <  1:215340/93‑1 (MQ=255)

                                                     ttACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGAtt                                    >  2:1143902/1‑93 (MQ=255)

                                                     ttACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGAtt                                    >  1:1583640/1‑93 (MQ=255)

                                                         aGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATttgtt                                <  1:3876800/93‑1 (MQ=255)

                                                         aGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATttgtt                                <  1:9510434/93‑1 (MQ=255)

                                                         aGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATttgtt                                >  1:6781051/1‑93 (MQ=255)

                                                         aGGCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATttgtt                                <  2:3316702/93‑1 (MQ=255)

                                                          ggCGGTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATttgttg                               >  2:6672564/1‑93 (MQ=255)

                                                             ggTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCa                            <  1:9873227/93‑1 (MQ=255)

                                                              gTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCAt                           >  1:4589275/1‑93 (MQ=255)

                                                              gTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCAt                           >  1:815852/1‑93 (MQ=255)

                                                              gTATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCAt                           <  1:91005/93‑1 (MQ=255)

                                                               tATCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCAtt                          >  1:2972286/1‑93 (MQ=255)

                                                                aTCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTc                         >  1:586049/1‑93 (MQ=255)

                                                                 tCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTcc                        >  1:3351014/1‑93 (MQ=255)

                                                                 tCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTcc                        <  1:9408675/93‑1 (MQ=255)

                                                                 tCGTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTcc                        <  2:6051824/93‑1 (MQ=255)

                                                                   gTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAg                      >  1:7336650/1‑93 (MQ=255)

                                                                   gTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAg                      >  2:7013436/1‑93 (MQ=255)

                                                                   gTTCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAg                      >  1:4455851/1‑93 (MQ=255)

                                                                    ttCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGa                     <  1:7668823/93‑1 (MQ=255)

                                                                     tCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGAt                    <  2:8020581/93‑1 (MQ=255)

                                                                     tCAGCGCCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGAt                    >  1:3815589/1‑93 (MQ=255)

                                                                     tCAGCGCCACACCAATGGCGCAGTTTCATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGAt                    <  1:1382934/93‑1 (MQ=255)

                                                                        gcgcCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTa                 <  1:1220541/93‑1 (MQ=255)

                                                                         cgcCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTat                <  1:8317291/93‑1 (MQ=255)

                                                                         cgcCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTat                >  1:4925741/1‑93 (MQ=255)

                                                                          gcCACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTatg               <  1:7837834/93‑1 (MQ=255)

                                                                           ccACACCCATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCCCCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTatga              <  1:2497660/93‑1 (MQ=255)

                                                                           ccACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTatga              <  1:8912325/93‑1 (MQ=255)

                                                                           ccACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTatga              >  2:3119761/1‑93 (MQ=255)

                                                                           ccACACCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTatga              >  2:1411653/1‑93 (MQ=255)

                                                                            cacaCCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTatgat             <  2:7746593/93‑1 (MQ=255)

                                                                            cacaCCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTatgat             <  1:2673216/93‑1 (MQ=255)

                                                                             acacCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTatgatt            >  2:1477709/1‑92 (MQ=255)

                                                                             acacCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTatgatg            <  2:4898330/93‑1 (MQ=255)

                                                                             acacCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTatgatg            >  2:7355243/1‑93 (MQ=255)

                                                                             acacCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTatgatg            <  2:128119/93‑1 (MQ=255)

                                                                              ccccAATGGCGCAGGTTGATTTGCTCTCTTCTGGATTCACCCAGCCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGt           <  1:7949195/91‑1 (MQ=255)

                                                                              cacCAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGt           >  2:6611625/1‑93 (MQ=255)

                                                                                ccAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTc         <  1:6100177/93‑1 (MQ=255)

                                                                                 cAATGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCg        >  2:4086772/1‑93 (MQ=255)

                                                                                  aaTGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGa       >  2:434507/1‑93 (MQ=255)

                                                                                   aTGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGAc      <  2:1869896/93‑1 (MQ=255)

                                                                                   aTGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGAc      >  2:468030/1‑93 (MQ=255)

                                                                                    tGGCGCAGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACt     >  2:8423498/1‑93 (MQ=255)

                                                                                       cgcaGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTtc  <  2:3240257/93‑1 (MQ=255)

TGGTATGTACAAACACCCATTTGTGATGCTTGCCTATTTGATCACGCAACACTTTACAGGCGGTATCGTTCAGCGCCACACCAATGGCGCGGTTTGATTTGCTCTCTTCTGGATTCACCCAGGCAACTCGTCGCTGCATGTCGATTTGTTGCCATTCCAGATTTATGATGTTCGACTTTC  >  NC_000913/564379‑564558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`