BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	963,286	A→G	H79R (CAC→CGC)	himD →	integration host factor beta subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	963,286	0	A	G	100.0%	1194.2 / NA	366	H79R (CAC→CGC)	himD	integration host factor beta subunit
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (216/150); total (216/150)

Only 100 of 376 total aligned reads displayed.

GCAGTTTCTCTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCACTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCG  >  NC_000913/963196‑963375

gCAGTTTCTCTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCt                                                                                         >  1:69811/1‑93 (MQ=255)

gCAGTTTCTCTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCt                                                                                         >  2:871030/1‑93 (MQ=255)

gCAGTTTCTCTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCt                                                                                         <  1:4284651/93‑1 (MQ=255)

  cgTTTCTTTTTACACTAGCGCGCCACCA‑GTACCCGACGTAATCCGAACACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTGCTCGCttt                                                                                       <  1:131651/92‑1 (MQ=255)

   gTTTCTCTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTa                                                                                      >  1:4809045/1‑93 (MQ=255)

    tttCTCTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTaa                                                                                     >  2:7959248/1‑93 (MQ=255)

      tctcTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAc                                                                                   >  1:602622/1‑93 (MQ=255)

      tctcTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAc                                                                                   <  1:499569/93‑1 (MQ=255)

       ctctTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAcc                                                                                  <  2:8800170/93‑1 (MQ=255)

       ctctTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAcc                                                                                  >  1:8101373/1‑93 (MQ=255)

       ctctTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAAcc                                                                                  >  1:9971608/1‑93 (MQ=255)

           ttGCACTACCGCG‑CACCACGTCCCGGACGTAAGCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGt                                                                              <  2:3019763/93‑1 (MQ=255)

           ttGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTgga                                                                              >  2:2751588/1‑92 (MQ=255)

           ttGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGt                                                                              <  1:1979181/93‑1 (MQ=255)

           ttGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGt                                                                              <  2:664735/93‑1 (MQ=255)

            tGCACTACCGGG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCTTCGCTTTAAACCTGGTa                                                                             <  1:383400/93‑1 (MQ=255)

            tGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTa                                                                             <  2:819551/93‑1 (MQ=255)

              cACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTaaa                                                                           <  2:2418981/93‑1 (MQ=255)

                cTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGa                                                                         >  1:1656056/1‑93 (MQ=255)

                cTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGa                                                                         >  1:1514100/1‑93 (MQ=255)

                 tACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGTTAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTACACCGGGTAAAGaa                                                                        >  2:3875692/1‑93 (MQ=255)

                  aCCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAAc                                                                       <  1:7123052/93‑1 (MQ=255)

                  aCCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAAc                                                                       <  2:725595/93‑1 (MQ=255)

                     gcg‑cACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTgc                                                                    <  2:4019712/93‑1 (MQ=255)

                      cg‑cACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTgcg                                                                   <  1:3087945/93‑1 (MQ=255)

                      cg‑cACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTgcg                                                                   >  2:1011194/1‑93 (MQ=255)

                          accacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGa                                                                >  1:4231837/1‑93 (MQ=255)

                           ccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGAt                                                               >  1:3006143/1‑93 (MQ=255)

                           ccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGAt                                                               >  2:6684819/1‑93 (MQ=255)

                           ccacGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGAt                                                               <  2:484052/93‑1 (MQ=255)

                             acGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATcg                                                             <  2:768159/93‑1 (MQ=255)

                             acGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATcg                                                             >  1:4112757/1‑93 (MQ=255)

                              cGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATcgc                                                            <  2:6856971/93‑1 (MQ=255)

                               gtcccGGACGTAAT‑CGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCgcgc                                                          <  1:6236821/90‑1 (MQ=255)

                               gTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATcgcg                                                           <  2:267531/93‑1 (MQ=255)

                                tACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCgcgc                                                          >  2:813742/1‑93 (MQ=255)

                                tACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCgcgc                                                          >  1:4714715/1‑93 (MQ=255)

                                   cGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCaa                                                       >  2:7545474/1‑93 (MQ=255)

                                    ggACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAat                                                      <  2:441792/93‑1 (MQ=255)

                                    ggACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAat                                                      >  2:333811/1‑93 (MQ=255)

                                     gACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAata                                                     >  2:5263840/1‑93 (MQ=255)

                                     gACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAata                                                     <  1:567502/93‑1 (MQ=255)

                                      aCGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAatat                                                    <  2:3385510/93‑1 (MQ=255)

                                       cGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATAtt                                                   <  1:6846366/93‑1 (MQ=255)

                                       cGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATAtt                                                   <  2:1792165/93‑1 (MQ=255)

                                        gTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATAttt                                                  >  1:10019601/1‑93 (MQ=255)

                                         tAATCCGAAGACTGGCGATAAAGTAGAACTGGACGGAAAATAGGGTCCTCGGTTTAAACCTGGCAAAGAACTGCGCCATCGCGCCAAGATTTa                                                 >  1:5050888/1‑93 (MQ=255)

                                         tAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTa                                                 >  1:3511514/1‑93 (MQ=255)

                                         tAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTa                                                 >  1:9201168/1‑93 (MQ=255)

                                          aaTCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTAc                                                >  1:9569990/1‑93 (MQ=255)

                                           aTCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACg                                               >  2:8394354/1‑93 (MQ=255)

                                               gAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTa                                           >  1:4302769/1‑93 (MQ=255)

                                                aaGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTaa                                          <  2:499372/93‑1 (MQ=255)

                                                 aGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAg                                         >  1:5304710/1‑93 (MQ=255)

                                                 aGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAg                                         <  1:584020/93‑1 (MQ=255)

                                                 aGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAg                                         >  2:6555831/1‑93 (MQ=255)

                                                 aGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAg                                         >  1:873570/1‑93 (MQ=255)

                                                  gACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGt                                        <  1:2281457/93‑1 (MQ=255)

                                                  gACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGt                                        >  2:5791616/1‑93 (MQ=255)

                                                     tGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttt                                     >  2:9632400/1‑93 (MQ=255)

                                                     tGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttt                                     >  2:6822975/1‑93 (MQ=255)

                                                     tGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttt                                     <  1:3644671/93‑1 (MQ=255)

                                                     tGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttt                                     >  2:8493956/1‑93 (MQ=255)

                                                     tGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttt                                     <  2:1541912/93‑1 (MQ=255)

                                                      ggCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGttttt                                    >  2:9284895/1‑93 (MQ=255)

                                                      ggCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGttttt                                    <  1:8340103/93‑1 (MQ=255)

                                                       gCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttttt                                   >  1:9326633/1‑93 (MQ=255)

                                                       gCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGtttttt                                   <  1:7853036/93‑1 (MQ=255)

                                                            aaaGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCa                              >  1:3283560/1‑93 (MQ=255)

                                                            aaaGTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCa                              <  2:4269821/93‑1 (MQ=255)

                                                               gTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAAc                           >  1:8019836/1‑93 (MQ=255)

                                                               gTAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAAc                           >  1:2104341/1‑93 (MQ=255)

                                                                tAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACt                          >  1:4550621/1‑93 (MQ=255)

                                                                tAGAACTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACt                          >  1:3197197/1‑93 (MQ=255)

                                                                   aaCTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGa                       <  1:7703711/93‑1 (MQ=255)

                                                                   aaCTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCCCGCCAATATTTCCGGTTAAGTTTTTTACTCAAACTTGa                       >  1:6305768/1‑93 (MQ=255)

                                                                    aCTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGaa                      <  2:4561994/93‑1 (MQ=255)

                                                                    aCTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGaa                      <  1:2557101/93‑1 (MQ=255)

                                                                    aCTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGaa                      <  1:6484951/93‑1 (MQ=255)

                                                                     cTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAAc                     >  2:6028931/1‑93 (MQ=255)

                                                                     cTGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAAc                     >  2:2387117/1‑93 (MQ=255)

                                                                      tGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACg                    >  2:5441519/1‑93 (MQ=255)

                                                                      tGGAAGGAAAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACg                    >  1:8449161/1‑93 (MQ=255)

                                                                         aaggaaAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACgaga                 >  2:3502490/1‑93 (MQ=255)

                                                                          aggaaAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACgagag                <  1:5379910/93‑1 (MQ=255)

                                                                          aggaaAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACgagag                >  1:1602401/1‑93 (MQ=255)

                                                                           ggaaAATACGTTCATCGCTTTACACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTCCTCAAACTAGAACgagaga               <  1:8964183/93‑1 (MQ=255)

                                                                            gaaAATACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGaa              >  2:6269660/1‑93 (MQ=255)

                                                                             aaaaTACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGaaa             <  2:7423621/93‑1 (MQ=255)

                                                                              aaaTACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGaaaa            <  1:6631302/93‑1 (MQ=255)

                                                                               aaTACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGATTTTTACTCAAACTTGAACGAGAGGAAAg           >  1:1120091/1‑93 (MQ=255)

                                                                                aTACGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGc          <  2:8843237/93‑1 (MQ=255)

                                                                                  aCGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCAc        <  2:9757122/93‑1 (MQ=255)

                                                                                   cGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCAcc       <  2:1255259/93‑1 (MQ=255)

                                                                                   cGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCAcc       <  1:7517097/93‑1 (MQ=255)

                                                                                   cGTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCAcc       <  1:732614/93‑1 (MQ=255)

                                                                                    gTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCt      <  2:1995859/93‑1 (MQ=255)

                                                                                    gTTCCTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATAATTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGCAAAGCACCt      >  1:5144661/1‑93 (MQ=255)

                                                                                       ccTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTc   <  2:1471157/93‑1 (MQ=255)

                                                                                        cTCGCTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCg  >  1:1673111/1‑93 (MQ=255)

GCAGTTTCTCTTTGCACTACCGCG‑CACCACGTACCGGACGTAATCCGAAGACTGGCGATAAAGTAGAACTGGAAGGAAAATACGTTCCTCACTTTAAACCTGGTAAAGAACTGCGCGATCGCGCCAATATTTACGGTTAAGTTTTTTACTCAAACTTGAACGAGAGAAAAGCACCTGTCG  >  NC_000913/963196‑963375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`