Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,017,437 T→C D29G (GAC→GGC)  b0955 ← putative ATP‑dependent protease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,017,4370TC99.7% 964.4 / NA 302D29G (GAC→GGC) b0955putative ATP‑dependent protease
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (169/132);  minor base A (1/0);  total (170/132)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 325 total aligned reads displayed.

ATAAAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGTCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGTT  >  NC_000913/1017347‑1017526
                                                                                          |                                                                                         
aTAAAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGcca                                                                                         >  2:7084729/1‑93 (MQ=255)
aTAAAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGcca                                                                                         >  2:914311/1‑93 (MQ=255)
 tAAAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGccaa                                                                                        <  1:6018189/93‑1 (MQ=255)
 tAAAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGccaa                                                                                        >  1:7144291/1‑93 (MQ=255)
 tAAAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGccaa                                                                                        <  2:1144856/93‑1 (MQ=255)
 tAAAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGccaa                                                                                        >  1:3249854/1‑93 (MQ=255)
   aaaGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGccaatc                                                                                      <  2:3169411/93‑1 (MQ=255)
      gaggagGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCaaa                                                                                   <  2:9445448/93‑1 (MQ=255)
      gaggagGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCaaa                                                                                   <  1:1792857/93‑1 (MQ=255)
       aggaggATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAAt                                                                                  <  2:8153020/93‑1 (MQ=255)
        ggaggaTGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAAtg                                                                                 >  1:7628633/1‑93 (MQ=255)
         gaggaTGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAAtgt                                                                                <  2:8830147/93‑1 (MQ=255)
         gaggaTGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAAtgt                                                                                >  2:1437904/1‑93 (MQ=255)
          aggaTGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAAtgtg                                                                               <  2:5106990/93‑1 (MQ=255)
           ggaTGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTgg                                                                              >  2:3269957/1‑93 (MQ=255)
            gaTGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGc                                                                             <  2:1863228/93‑1 (MQ=255)
            gaTGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGc                                                                             >  1:5635563/1‑93 (MQ=255)
             aTGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCt                                                                            >  1:4834256/1‑93 (MQ=255)
              tGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTg                                                                           >  1:2736795/1‑93 (MQ=255)
              tGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTg                                                                           >  1:2873828/1‑93 (MQ=255)
                cTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAg                                                                         <  1:8235756/93‑1 (MQ=255)
                cTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAg                                                                         >  1:4492046/1‑93 (MQ=255)
                   gcgTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCaa                                                                      >  1:2159816/1‑93 (MQ=255)
                   gcgTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCaa                                                                      >  2:4243370/1‑93 (MQ=255)
                    cgTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCaaa                                                                     <  1:5312766/93‑1 (MQ=255)
                     gTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAat                                                                    >  1:4905449/1‑93 (MQ=255)
                     gTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAat                                                                    >  1:8366973/1‑93 (MQ=255)
                      tATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAata                                                                   >  1:8883517/1‑93 (MQ=255)
                      tATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAata                                                                   >  2:1555059/1‑93 (MQ=255)
                      tATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAata                                                                   >  2:5447133/1‑93 (MQ=255)
                      tATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGACAATCAAATGTGGCTGAGCAAatt                                                                   >  1:1406775/1‑92 (MQ=255)
                       aTGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAatat                                                                  >  1:3094353/1‑93 (MQ=255)
                        tGCAGCAACTGCTCCAGCGCAAATCGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATAtt                                                                 >  2:2452935/1‑93 (MQ=255)
                           agcagcTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTcc                                                              <  2:2099389/93‑1 (MQ=255)
                           agcaACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTcc                                                              <  1:9076016/93‑1 (MQ=255)
                            gcaACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCt                                                             <  2:6368330/93‑1 (MQ=255)
                            gcaACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCt                                                             >  2:3950377/1‑93 (MQ=255)
                             caACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATAGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTg                                                            >  1:7721196/1‑93 (MQ=255)
                              aaCTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTTCTGa                                                           >  2:1742681/1‑93 (MQ=255)
                              aaCTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGa                                                           <  2:7192729/93‑1 (MQ=255)
                                cTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATa                                                         <  1:2623514/93‑1 (MQ=255)
                                cTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATa                                                         >  1:4682521/1‑93 (MQ=255)
                                cTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATa                                                         <  2:845688/93‑1 (MQ=255)
                                   cTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCt                                                      >  1:2050327/1‑93 (MQ=255)
                                   cTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCt                                                      <  2:1344452/93‑1 (MQ=255)
                                    tCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTa                                                     <  1:61755/93‑1 (MQ=255)
                                       aGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCg                                                  >  2:8388113/1‑93 (MQ=255)
                                        gcgcAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCgg                                                 >  1:5157077/1‑93 (MQ=255)
                                        gcgcAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAAAGTGGCTGAGCAAATATTTCCTGATAGCTATCgg                                                 >  1:9696919/1‑93 (MQ=255)
                                         cgcAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGt                                                <  1:5658934/93‑1 (MQ=255)
                                           cAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTAt                                              >  2:3037431/1‑93 (MQ=255)
                                             aaTTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCa                                            <  2:2420751/93‑1 (MQ=255)
                                             aaTTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCa                                            >  2:2034258/1‑93 (MQ=255)
                                             aaTTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCa                                            >  1:7977636/1‑93 (MQ=255)
                                              aTTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAg                                           <  1:1366538/93‑1 (MQ=255)
                                                 gCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGACAGCTATCGGTATCAGGaa                                        <  2:5883639/93‑1 (MQ=255)
                                                  cAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAAc                                       <  2:6232077/93‑1 (MQ=255)
                                                    gCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCa                                     >  2:2313591/1‑93 (MQ=255)
                                                     ccGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAg                                    <  2:8621537/93‑1 (MQ=255)
                                                         ggTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCa                                <  2:3104542/93‑1 (MQ=255)
                                                          gTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCAc                               >  1:415183/1‑93 (MQ=255)
                                                          gTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCAc                               >  2:3334280/1‑93 (MQ=255)
                                                          gTTGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGAAAATATTTCCTGATAGCTATCGGTATCAGGAAGCAGGTCAc                               >  2:8175946/1‑93 (MQ=255)
                                                           ttGAGTATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACg                              >  1:8070314/1‑93 (MQ=255)
                                                                tATCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATg                         >  1:7072015/1‑93 (MQ=255)
                                                                tATCACTGAATAAAGGATCGATTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATg                         <  2:2565750/93‑1 (MQ=255)
                                                                 aTCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGc                        >  1:8680474/1‑93 (MQ=255)
                                                                  tCACTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCa                       >  2:4577308/1‑93 (MQ=255)
                                                                  tCACAGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCa                       >  2:6491558/1‑93 (MQ=255)
                                                                     cTGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGt                    >  2:4696207/1‑93 (MQ=255)
                                                                      tGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGtt                   <  2:8873955/93‑1 (MQ=255)
                                                                      tGAATAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGtt                   <  2:3636772/93‑1 (MQ=255)
                                                                        aaTAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTc                 <  1:8581357/93‑1 (MQ=255)
                                                                        aaTAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTc                 >  2:6596721/1‑93 (MQ=255)
                                                                         aTAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCg                <  1:3731565/93‑1 (MQ=255)
                                                                          tAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGt               <  2:2192325/93‑1 (MQ=255)
                                                                          tAAAGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGt               >  1:6544526/1‑93 (MQ=255)
                                                                          tAAAGGATCATTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGt               <  1:9978291/93‑1 (MQ=255)
                                                                           aaaGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCATGAACCAGGTCACGCCATGCAAGTTTCGTa              >  1:9492828/1‑93 (MQ=255)
                                                                           aaaGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTa              >  2:9765144/1‑93 (MQ=255)
                                                                           aaaGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTa              <  1:40799/93‑1 (MQ=255)
                                                                            aaGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTaa             <  1:1052226/93‑1 (MQ=255)
                                                                            aaGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTaa             <  1:173974/93‑1 (MQ=255)
                                                                            aaGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTaa             <  1:4041187/93‑1 (MQ=255)
                                                                            aaGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTaa             >  2:7646383/1‑93 (MQ=255)
                                                                             aGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAAt            <  1:5448273/93‑1 (MQ=255)
                                                                             aGGATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAAt            <  2:7384315/93‑1 (MQ=255)
                                                                             aGGAGCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAAt            <  2:7414088/93‑1 (MQ=255)
                                                                              ggATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATg           <  1:6527470/93‑1 (MQ=255)
                                                                              ggATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATg           >  1:5359990/1‑93 (MQ=255)
                                                                              ggATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATg           <  1:395998/93‑1 (MQ=255)
                                                                               gATCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATgg          >  2:2876241/1‑93 (MQ=255)
                                                                                aTCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGt         <  1:6558140/93‑1 (MQ=255)
                                                                                aTCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGt         <  1:6792798/93‑1 (MQ=255)
                                                                                 tCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTc        >  2:5260802/1‑93 (MQ=255)
                                                                                 tCGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTc        >  1:1645110/1‑93 (MQ=255)
                                                                                  cGTTTTCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGCCACGCCATGCAAGTTTCGTAATGGTCa       >  1:2367302/1‑93 (MQ=255)
                                                                                     tttCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAg    >  2:4095628/1‑93 (MQ=255)
                                                                                       tCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGtt  <  1:1167536/93‑1 (MQ=255)
                                                                                       tCGCCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGCATCAGGCACCTTGTCACCCCATGCAAGTTTCGTAATGGTCAAAGtt  >  2:1635184/1‑93 (MQ=255)
                                                                                          |                                                                                         
ATAAAAGAGGAGGATGCTCGCGTATGCAGCAACTGCTCCAGCGCAAATTGCAGCCGCGGTTGAGTATCACTGAATAAAGGATCGTTTTCGTCAATCAAATGTGGCTGAGCAAATATTTCCTGATAGCTATCGGTATCAGGAACCAGGTCACGCCATGCAAGTTTCGTAATGGTCAAAGTT  >  NC_000913/1017347‑1017526

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑