BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,132,875	T→C	L360P (CTG→CCG)	flgE →	hook protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,132,875	0	T	C	100.0%	632.1 / NA	197	L360P (CTG→CCG)	flgE	hook protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (77/120); total (77/120)

Only 100 of 201 total aligned reads displayed.

ACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAA  >  NC_000913/1132785‑1132964

aCAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCgg                                                                                         >  2:4729604/1‑93 (MQ=255)

    cGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGc                                                                                     >  1:2509632/1‑93 (MQ=255)

      tctggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGt                                                                                   >  2:5695854/1‑93 (MQ=255)

        tggtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTcc                                                                                 <  2:5939691/93‑1 (MQ=255)

          gtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCaa                                                                               <  1:1389899/93‑1 (MQ=255)

          gtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCaa                                                                               <  1:1594125/93‑1 (MQ=255)

          gtctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCaa                                                                               <  1:8116427/93‑1 (MQ=255)

           tctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAAc                                                                              <  1:3839225/93‑1 (MQ=255)

            ctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACg                                                                             >  2:7504560/1‑93 (MQ=255)

            ctgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACg                                                                             <  2:2012461/93‑1 (MQ=255)

             tgCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGt                                                                            >  2:3428443/1‑93 (MQ=255)

              gCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTc                                                                           >  2:9273812/1‑93 (MQ=255)

              gCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTc                                                                           <  1:952403/93‑1 (MQ=255)

              gCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTc                                                                           >  1:299955/1‑93 (MQ=255)

              gCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTc                                                                           <  2:604809/93‑1 (MQ=255)

               cGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCg                                                                          <  2:5071452/93‑1 (MQ=255)

                 aCGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGGACCCTGACAAACGGTGGGCCGGAAGCGTCCAACGTCGAt                                                                        >  2:5262214/1‑93 (MQ=255)

                   gCAATCTTCTGGCGTGGCGCTGTTGGGCACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAtct                                                                      <  1:5058763/93‑1 (MQ=255)

                    cAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGAtctc                                                                     <  1:7874977/93‑1 (MQ=255)

                     aaTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCa                                                                    <  1:5111948/93‑1 (MQ=255)

                     aaTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCa                                                                    <  1:1183476/93‑1 (MQ=255)

                      aTCTTCTGGGGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAg                                                                   <  1:7466803/93‑1 (MQ=255)

                      aTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAg                                                                   <  2:3132215/93‑1 (MQ=255)

                      aTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAg                                                                   <  1:9180704/93‑1 (MQ=255)

                      aTCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAg                                                                   <  1:6407361/93‑1 (MQ=255)

                       tgttctGGCGTGGCGCTGTTGGGGACAGCCTGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGt                                                                  <  1:7117260/91‑1 (MQ=255)

                       tcttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGt                                                                  <  1:9898051/93‑1 (MQ=255)

                       tcttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGt                                                                  <  1:5782129/93‑1 (MQ=255)

                         ttctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTaa                                                                <  2:8045381/93‑1 (MQ=255)

                           ctGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAg                                                              >  1:6817940/1‑93 (MQ=255)

                             ggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGaa                                                            >  1:4593349/1‑93 (MQ=255)

                             ggcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGaa                                                            <  2:1182277/93‑1 (MQ=255)

                              gcgtggcgGTGTTTGGGACAGCCCGGACGGGAAACTTTGGCCCCCTGACCAACGGTGCGCCGGAAGCGGCCAACGTCGATCTCAGTAAAAAAc                                                           <  2:7228117/93‑1 (MQ=255)

                              gcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAc                                                           >  1:5073276/1‑93 (MQ=255)

                              gcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAc                                                           >  1:8662912/1‑93 (MQ=255)

                              gcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAAc                                                           >  2:1746798/1‑93 (MQ=255)

                              gcgtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGGGCGGCGGGAGCGTCCAACGTCGATATCAGTAAAGaag                                                           >  1:5332960/1‑92 (MQ=255)

                                gtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTCAAGAACTg                                                         >  2:775711/1‑93 (MQ=255)

                                gtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTg                                                         <  1:6339731/93‑1 (MQ=255)

                                gtggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTg                                                         <  1:148516/93‑1 (MQ=255)

                                  ggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGt                                                       >  1:6457791/1‑93 (MQ=255)

                                  ggcgCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGt                                                       >  1:6534184/1‑93 (MQ=255)

                                     gcTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCaa                                                    >  2:5960732/1‑93 (MQ=255)

                                      cTGTGGGGGACAGCCGGGACGGGAATCTTTGGCTCCCTGACCAACGGTGCGCCTGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAat                                                   <  1:3603753/93‑1 (MQ=255)

                                       tGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAata                                                  <  1:2610736/93‑1 (MQ=255)

                                       tGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAata                                                  <  2:1720342/93‑1 (MQ=255)

                                        gTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAatat                                                 >  1:8554875/1‑93 (MQ=255)

                                         ttGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATg                                                <  1:10037638/93‑1 (MQ=255)

                                           ggggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGAt                                              <  2:3174665/93‑1 (MQ=255)

                                           ggggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGAt                                              <  1:986063/93‑1 (MQ=255)

                                           ggggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGAt                                              <  1:9355620/93‑1 (MQ=255)

                                           ggggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGAt                                              <  1:4234349/93‑1 (MQ=255)

                                           ggggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGAt                                              <  1:8611186/93‑1 (MQ=255)

                                           ggggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGAt                                              <  1:2449517/93‑1 (MQ=255)

                                            gggACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATc                                             <  1:8261294/93‑1 (MQ=255)

                                              gACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGt                                           <  2:5791383/93‑1 (MQ=255)

                                              gACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGt                                           <  1:7423024/93‑1 (MQ=255)

                                              gACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGt                                           <  1:2101604/93‑1 (MQ=255)

                                               gcAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGtt                                          <  2:5413923/92‑1 (MQ=255)

                                               aCAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGtt                                          <  2:5827599/93‑1 (MQ=255)

                                                cAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTg                                         >  1:1567472/1‑93 (MQ=255)

                                                 aGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGc                                        <  2:1129864/93‑1 (MQ=255)

                                                 aGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGc                                        >  2:1060042/1‑93 (MQ=255)

                                                  gCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGcc                                       >  1:3984820/1‑93 (MQ=255)

                                                   ccGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGccc                                      <  1:851145/93‑1 (MQ=255)

                                                   ccGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGccc                                      <  1:9807571/93‑1 (MQ=255)

                                                     gggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAg                                    >  1:8000856/1‑93 (MQ=255)

                                                      ggacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGc                                   >  2:6920183/1‑93 (MQ=255)

                                                       gacgggaAACTTTGGGACACTGACCAACGGTGCGCCGGAAGCGTCCAAAGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCg                                  >  2:9635755/1‑93 (MQ=255)

                                                       gacgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCg                                  >  2:1421748/1‑93 (MQ=255)

                                                        gcgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGt                                 <  2:7080522/92‑1 (MQ=255)

                                                        acgggaAACTTTGGCACCCTGACCAACGGTGCGCCGGACGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGACCACCGt                                 >  2:5137649/1‑93 (MQ=255)

                                                          gggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTaa                               <  1:5548497/93‑1 (MQ=255)

                                                          gggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTaa                               <  2:6956875/93‑1 (MQ=255)

                                                           ggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAAc                              >  2:1843480/1‑93 (MQ=255)

                                                           ggaAACTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAAc                              <  2:3087467/93‑1 (MQ=255)

                                                                cTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCa                         <  2:4996621/93‑1 (MQ=255)

                                                                cTTTGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCa                         <  1:4878270/93‑1 (MQ=255)

                                                                 tttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAg                        >  2:8597659/1‑93 (MQ=255)

                                                                  ttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGt                       <  2:3501532/93‑1 (MQ=255)

                                                                  ttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGt                       <  1:7006927/93‑1 (MQ=255)

                                                                  ttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGt                       <  2:3331124/93‑1 (MQ=255)

                                                                  ttGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGt                       >  1:452182/1‑93 (MQ=255)

                                                                   tGGCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTc                      <  1:6076782/93‑1 (MQ=255)

                                                                     gCACCCTGACCACCGGTGCCCCTGAGGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCTAGCGTAACTAACAGTCTa                    <  2:5603281/93‑1 (MQ=255)

                                                                     gCACCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTa                    >  1:9176767/1‑93 (MQ=255)

                                                                       ccccTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAAc                  <  2:7417884/92‑1 (MQ=255)

                                                                       aCCCTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAAc                  >  1:9096439/1‑93 (MQ=255)

                                                                         ccTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATCATCTATTCCCAGCTTAACTATCAGCGTAACGc                >  1:3297417/1‑93 (MQ=255)

                                                                          cTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGcc               >  1:765217/1‑93 (MQ=255)

                                                                          cTGACCAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGcc               >  2:3991488/1‑93 (MQ=255)

                                                                              ccAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGa           >  1:240232/1‑93 (MQ=255)

                                                                               cAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGAc          >  1:8851786/1‑93 (MQ=255)

                                                                               cAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGAc          >  2:8224995/1‑93 (MQ=255)

                                                                               cAACGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGAc          <  2:4577382/93‑1 (MQ=255)

                                                                                aaCGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGAcc         <  2:7929127/93‑1 (MQ=255)

                                                                                 aCGGTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCa        <  2:4678182/93‑1 (MQ=255)

                                                                                   ggTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATc      <  2:3744995/93‑1 (MQ=255)

                                                                                   ggTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATc      <  1:6525158/93‑1 (MQ=255)

                                                                                    gTGCGCCGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCa     >  2:8738503/1‑93 (MQ=255)

ACAACGTCTGGTCTGCGACGCAATCTTCTGGCGTGGCGCTGTTGGGGACAGCCGGGACGGGAAACTTTGGCACCCTGACCAACGGTGCGCTGGAAGCGTCCAACGTCGATCTCAGTAAAGAACTGGTCAATATGATCGTTGCCCAGCGTAACTATCAGTCTAACGCCCAGACCATCAAAA  >  NC_000913/1132785‑1132964

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`