BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,291,867	A→G	R93R (CGT→CGC)	hns ←	DNA‑binding protein HLP‑II

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,291,867	0	A	G	100.0%	968.0 / NA	300	R93R (CGT→CGC)	hns	DNA‑binding protein HLP‑II
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (168/132); total (168/132)

Only 100 of 310 total aligned reads displayed.

CATTGCTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGACGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGATCAGCAT  >  NC_000913/1291777‑1291956

  ttGCTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCt                                                                                       <  1:9590173/93‑1 (MQ=255)

  ttGCTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCt                                                                                       >  1:10016504/1‑93 (MQ=255)

    gCTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGa                                                                                     <  1:6244821/93‑1 (MQ=255)

     cTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAg                                                                                    >  1:7850181/1‑93 (MQ=255)

     cTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAg                                                                                    >  1:3867801/1‑93 (MQ=255)

       tttttGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCa                                                                                  <  2:70062/93‑1 (MQ=255)

          ttGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGt                                                                               >  1:698621/1‑93 (MQ=255)

           tGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGtt                                                                              <  1:4454924/93‑1 (MQ=255)

            gATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGttt                                                                             >  2:8816699/1‑93 (MQ=255)

             aTTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTa                                                                            >  2:6799359/1‑93 (MQ=255)

             aTTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTa                                                                            <  1:5751409/93‑1 (MQ=255)

               tACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGc                                                                          <  1:3275811/93‑1 (MQ=255)

                    cTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTgg                                                                     <  1:9733048/93‑1 (MQ=255)

                    cTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTgg                                                                     <  1:2872383/93‑1 (MQ=255)

                    cTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTgg                                                                     <  2:7687712/93‑1 (MQ=255)

                       gAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGc                                                                  <  1:6173873/93‑1 (MQ=255)

                       gAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGc                                                                  <  1:5224137/93‑1 (MQ=255)

                         gTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCa                                                                >  2:8096496/1‑93 (MQ=255)

                          tACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAg                                                               >  1:1938603/1‑93 (MQ=255)

                           aCGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGa                                                              >  2:2348080/1‑93 (MQ=255)

                            cGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGAt                                                             >  1:7742148/1‑93 (MQ=255)

                            cGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGAt                                                             >  2:2684269/1‑93 (MQ=255)

                            cGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGAt                                                             >  1:488440/1‑93 (MQ=255)

                             ggCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGAtt                                                            <  1:9013870/93‑1 (MQ=255)

                              gCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGAttt                                                           >  1:9346097/1‑93 (MQ=255)

                               ccTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTGGGTGCCAGATTTa                                                          >  2:8776714/1‑93 (MQ=255)

                                 ttGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAAc                                                        >  2:4446472/1‑93 (MQ=255)

                                 ttGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAAc                                                        <  2:5711306/93‑1 (MQ=255)

                                   ggCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACgg                                                      >  2:9410825/1‑93 (MQ=255)

                                    gCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGgc                                                     <  2:6419250/93‑1 (MQ=255)

                                        gTCCAGGTTTTAGTTTCGCCGTTTTCATCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGgcagca                                                 >  2:5947049/1‑93 (MQ=255)

                                         tCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCaa                                                <  2:3825688/93‑1 (MQ=255)

                                         tCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCaa                                                <  2:4169747/93‑1 (MQ=255)

                                         tCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCaa                                                >  2:2037633/1‑93 (MQ=255)

                                         tCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCaa                                                >  2:5418115/1‑93 (MQ=255)

                                             ggTTTTAGTTTCGACGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCt                                            >  2:9514868/1‑93 (MQ=255)

                                              gTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTa                                           >  1:5819047/1‑93 (MQ=255)

                                              gTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTa                                           >  2:1656624/1‑93 (MQ=255)

                                               ttttAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTAt                                          <  1:4965454/93‑1 (MQ=255)

                                               ttttAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTAt                                          >  2:6347687/1‑93 (MQ=255)

                                               ttttAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCAGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTAt                                          >  1:1713726/1‑93 (MQ=255)

                                                 ttAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTc                                        <  1:2237927/93‑1 (MQ=255)

                                                 ttAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTc                                        <  1:298761/93‑1 (MQ=255)

                                                 ttAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAAGCTATTc                                        >  2:1928763/1‑93 (MQ=255)

                                                  tAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTca                                       <  1:8268582/93‑1 (MQ=255)

                                                  tAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTca                                       >  2:8254634/1‑93 (MQ=255)

                                                  tAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTca                                       <  2:7155526/93‑1 (MQ=255)

                                                   aGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTcag                                      >  2:6929702/1‑93 (MQ=255)

                                                   aGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTcag                                      >  1:4179432/1‑93 (MQ=255)

                                                    gTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTcagc                                     <  2:5022513/93‑1 (MQ=255)

                                                    gTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTcagc                                     >  2:3236908/1‑93 (MQ=255)

                                                      ttCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTcagcag                                   <  1:9190328/93‑1 (MQ=255)

                                                      ttCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTcagcag                                   <  2:7793962/93‑1 (MQ=255)

                                                      ttCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTcagcag                                   <  1:361620/93‑1 (MQ=255)

                                                        cGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAgtt                                 >  1:6543791/1‑93 (MQ=255)

                                                        cGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAgtt                                 <  1:8702529/93‑1 (MQ=255)

                                                         gCCGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAgttc                                >  1:6883943/1‑93 (MQ=255)

                                                          ccGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAgttcg                               >  2:7480813/1‑93 (MQ=255)

                                                           cGTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAgttcgt                              >  2:3207270/1‑93 (MQ=255)

                                                            gTTTTCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAgttcgtt                             >  2:2920239/1‑93 (MQ=255)

                                                             ttttCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAgttcgttc                            >  1:3476408/1‑93 (MQ=255)

                                                              tttCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGttcgttcg                           <  1:8013178/93‑1 (MQ=255)

                                                              tttCGTCAACGTAGCTATATTTTGCCGGGAGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGttcgttcg                           >  2:2594855/1‑93 (MQ=255)

                                                                tCGTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCATCAGTTCGTTCggg                         <  2:8368866/93‑1 (MQ=255)

                                                                  gTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTc                       >  2:3625148/1‑93 (MQ=255)

                                                                  gTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTc                       <  2:2983407/93‑1 (MQ=255)

                                                                  gTCAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTc                       <  1:815863/93‑1 (MQ=255)

                                                                   taaaCGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCa                      <  1:4748097/91‑1 (MQ=255)

                                                                    cAACGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCaa                     <  1:7588708/93‑1 (MQ=255)

                                                                     aaCGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAAt                    >  1:5325824/1‑93 (MQ=255)

                                                                     aaCGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAAt                    <  1:5195283/93‑1 (MQ=255)

                                                                      aCGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATa                   >  2:9815883/1‑93 (MQ=255)

                                                                      aCGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATa                   <  1:4720312/93‑1 (MQ=255)

                                                                       cGTAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATAc                  <  2:6212361/93‑1 (MQ=255)

                                                                         tAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCg                >  1:1584272/1‑93 (MQ=255)

                                                                         tAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCg                >  1:7343900/1‑93 (MQ=255)

                                                                         tAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCg                >  1:3971917/1‑93 (MQ=255)

                                                                         tAGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAACAGTTCGTTCGGGTCAATACCg                >  2:106596/1‑93 (MQ=255)

                                                                          aGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGt               >  2:4290799/1‑93 (MQ=255)

                                                                          aGCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGt               >  2:9255458/1‑93 (MQ=255)

                                                                           gCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTc              >  2:9877071/1‑93 (MQ=255)

                                                                           gCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTc              >  2:1500177/1‑93 (MQ=255)

                                                                           gCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTc              >  1:5443763/1‑93 (MQ=255)

                                                                           gCTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTc              >  1:8461404/1‑93 (MQ=255)

                                                                            cTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCa             >  1:806890/1‑93 (MQ=255)

                                                                            cTATATTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGGGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCa             >  1:4615914/1‑93 (MQ=255)

                                                                             tataTTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAg            <  1:2533915/93‑1 (MQ=255)

                                                                              atatTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGc           >  2:9031010/1‑93 (MQ=255)

                                                                               tatTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCg          >  2:5367969/1‑93 (MQ=255)

                                                                                atTTTGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGa         >  2:4764431/1‑93 (MQ=255)

                                                                                 ttttGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGAt        <  2:2107865/93‑1 (MQ=255)

                                                                                 ttttGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGAt        >  1:861483/1‑93 (MQ=255)

                                                                                 ttttGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGATCGGGTCAATACCGTCAGCGAt        >  2:5201696/1‑93 (MQ=255)

                                                                                  tttGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGATc       <  1:1055824/93‑1 (MQ=255)

                                                                                  tttGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGATc       <  2:761811/93‑1 (MQ=255)

                                                                                   ttGCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGATCa      <  2:6187786/93‑1 (MQ=255)

                                                                                     gCCGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGATCAGc    <  2:3441362/93‑1 (MQ=255)

                                                                                      ccGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGATCAGCa   <  2:5538925/93‑1 (MQ=255)

                                                                                      ccGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGATCAGCa   <  1:1454209/93‑1 (MQ=255)

                                                                                       cGGGCGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGATCAGCAt  >  2:949326/1‑93 (MQ=255)

CATTGCTTTTTTGATTACAGCTGGAGTACGGCCTTGGCCAGTCCAGGTTTTAGTTTCGCCGTTTTCGTCAACGTAGCTATATTTTGCCGGACGCTGAGCACGTTTAGCTTTGGTGCCAGATTTAACGGCAGCAAGGCTATTCAGCAGTTCGTTCGGGTCAATACCGTCAGCGATCAGCAT  >  NC_000913/1291777‑1291956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`