Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,690,777 T→C L29L (CTA→CTG uidC ← membrane‑associated protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,690,7770TC99.6% 837.1 / ‑5.8 262L29L (CTA→CTGuidCmembrane‑associated protein
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (135/126);  total (136/126)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

Only 100 of 270 total aligned reads displayed.

CAATCCTCCCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGTAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCATGGCCACTAT  >  NC_000913/1690687‑1690866
                                                                                          |                                                                                         
  aTCCTCCCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCTCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTc                                                                                       >  1:5558009/1‑93 (MQ=255)
   tcctccCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTcc                                                                                      <  1:342897/93‑1 (MQ=255)
    cctccCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTccc                                                                                     <  1:1174815/93‑1 (MQ=255)
    cctccCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTccc                                                                                     >  1:6895360/1‑93 (MQ=255)
      tccCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGc                                                                                   <  2:8013767/93‑1 (MQ=255)
       cccTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCt                                                                                  >  2:5942800/1‑93 (MQ=255)
       cccTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCt                                                                                  <  1:6459067/93‑1 (MQ=255)
       cccTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCt                                                                                  >  2:7241477/1‑93 (MQ=255)
         cTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTc                                                                                >  2:7033093/1‑93 (MQ=255)
          tGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCa                                                                               >  2:9719699/1‑93 (MQ=255)
          tGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCa                                                                               >  1:7656365/1‑93 (MQ=255)
          tGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCa                                                                               <  2:6074990/93‑1 (MQ=255)
          tGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCa                                                                               >  1:6213994/1‑93 (MQ=255)
           gTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCAt                                                                              >  1:9291181/1‑93 (MQ=255)
           gTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCAt                                                                              >  2:8715660/1‑93 (MQ=255)
           gTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCAt                                                                              >  2:4687434/1‑93 (MQ=255)
             aCCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCg                                                                            >  1:5925459/1‑93 (MQ=255)
             aCCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCg                                                                            >  2:286448/1‑93 (MQ=255)
              cccATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGt                                                                           >  1:9850321/1‑93 (MQ=255)
              cccATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGt                                                                           <  1:3499416/93‑1 (MQ=255)
              cccATGCGTAAATATCTCTTCCCGCGACAGCACTGGGCTTATCCGCCCTGCGCCATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCgc                                                                           >  1:4828960/1‑92 (MQ=255)
                cATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCa                                                                         <  1:2754974/93‑1 (MQ=255)
                 aTGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAg                                                                        >  2:2195715/1‑93 (MQ=255)
                 aTGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAg                                                                        >  2:3415095/1‑93 (MQ=255)
                  tGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGc                                                                       >  1:4058903/1‑93 (MQ=255)
                  tGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGc                                                                       >  1:5638470/1‑93 (MQ=255)
                  tGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGc                                                                       >  1:3911913/1‑93 (MQ=255)
                  tGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGc                                                                       >  1:3761715/1‑93 (MQ=255)
                    cGTAAATATCTCTTCCCGCGCCAGTACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCa                                                                     >  2:7787407/1‑93 (MQ=255)
                      tAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGt                                                                   >  2:3130654/1‑93 (MQ=255)
                      tAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGt                                                                   >  2:4802146/1‑93 (MQ=255)
                      tAAATATCTCTTCCAGCGCCAGCACTGGGCTTATCCGCCCTGCGCACTTCGTTTTTCAGTCTGATGCACAGTCCCGCTTAATCGTCAGCCAGt                                                                   <  2:8413504/93‑1 (MQ=255)
                       aaaTATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGtt                                                                  >  2:10033485/1‑93 (MQ=255)
                        aaTATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTg                                                                 <  2:4947489/93‑1 (MQ=255)
                            tctcTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGcgcc                                                             <  2:6924892/93‑1 (MQ=255)
                            tctcTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGcgcc                                                             <  1:8564500/93‑1 (MQ=255)
                              tctTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGcgccgc                                                           >  2:8916367/1‑93 (MQ=255)
                                 tCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATa                                                        <  1:439638/93‑1 (MQ=255)
                                  cccGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATaa                                                       >  2:3449837/1‑93 (MQ=255)
                                   ccGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAg                                                      >  2:5087169/1‑93 (MQ=255)
                                       gcCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCaga                                                  <  1:2048556/93‑1 (MQ=255)
                                        ccAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCagag                                                 <  1:534544/93‑1 (MQ=255)
                                          aGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGt                                               >  2:1225798/1‑93 (MQ=255)
                                           gCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTa                                              <  2:2016630/93‑1 (MQ=255)
                                           gCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTa                                              <  1:1054702/93‑1 (MQ=255)
                                            cACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTaa                                             <  1:172474/93‑1 (MQ=255)
                                            cACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTaa                                             <  1:4993771/93‑1 (MQ=255)
                                            cACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTaa                                             <  1:281231/93‑1 (MQ=255)
                                            cACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTaa                                             <  1:2956205/93‑1 (MQ=255)
                                             aCTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAg                                            <  1:7871072/93‑1 (MQ=255)
                                              cTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAgg                                           >  2:7979160/1‑93 (MQ=255)
                                               tGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGc                                          >  1:818546/1‑93 (MQ=255)
                                               tGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGc                                          >  2:2580500/1‑93 (MQ=255)
                                                gggCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGcc                                         <  1:3158975/93‑1 (MQ=255)
                                                 ggCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGGAAGGCCa                                        >  2:1938275/1‑93 (MQ=255)
                                                   cTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCaga                                      <  2:5773559/93‑1 (MQ=255)
                                                     tATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCTCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAgg                                    <  1:5270366/93‑1 (MQ=255)
                                                     tATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCagcgc                                    >  1:7719020/1‑90 (MQ=255)
                                                     tATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAgg                                    <  2:9337914/93‑1 (MQ=255)
                                                      aTCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGc                                   >  2:1592905/1‑93 (MQ=255)
                                                      aTCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGc                                   <  1:21267/93‑1 (MQ=255)
                                                      aTCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGc                                   <  2:7689584/93‑1 (MQ=255)
                                                       tCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCa                                  <  1:9789556/93‑1 (MQ=255)
                                                         cGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGGCAGAGGCAGc                                >  2:5211772/1‑93 (MQ=255)
                                                         cGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGc                                >  1:7586707/1‑93 (MQ=255)
                                                         cGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGc                                <  2:7463101/93‑1 (MQ=255)
                                                         cGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGc                                <  1:7833177/93‑1 (MQ=255)
                                                          gCCCTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGcc                               <  2:9195597/93‑1 (MQ=255)
                                                           cccTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCg                              >  2:9597732/1‑93 (MQ=255)
                                                           cccTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCg                              <  1:715198/93‑1 (MQ=255)
                                                             cTGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTc                            >  2:5128230/1‑93 (MQ=255)
                                                              tGCGCAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCa                           >  2:3781595/1‑93 (MQ=255)
                                                                 gcAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGc                        >  2:6578666/1‑93 (MQ=255)
                                                                  cAATTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCa                       >  1:8781225/1‑93 (MQ=255)
                                                                   aaTTCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCaa                      >  2:3826286/1‑93 (MQ=255)
                                                                      tCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATa                   >  2:4303717/1‑93 (MQ=255)
                                                                      tCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATa                   <  1:1280268/93‑1 (MQ=255)
                                                                      tCGTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATa                   <  1:1808073/93‑1 (MQ=255)
                                                                        gTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAAc                 <  1:1093140/93‑1 (MQ=255)
                                                                        gTTTTTCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAAc                 >  2:3949696/1‑93 (MQ=255)
                                                                         tttttCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACg                <  1:2514512/93‑1 (MQ=255)
                                                                         tttttCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACg                <  1:3371244/93‑1 (MQ=255)
                                                                          ttttCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACgg               <  1:136257/93‑1 (MQ=255)
                                                                           tttCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGc              >  2:1508036/1‑93 (MQ=255)
                                                                           tttCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGc              <  2:2634735/93‑1 (MQ=255)
                                                                            ttCAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGcc             <  2:9075032/93‑1 (MQ=255)
                                                                             tCAGTCTGAGGCGCAGTCCCGCTTCATCGTCAGCCAGTTTCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCa            <  2:8769881/93‑1 (MQ=255)
                                                                              cAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCag           >  1:1835106/1‑92 (MQ=255)
                                                                              cAGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCAt           >  1:7342287/1‑93 (MQ=255)
                                                                               aGTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCATg          <  1:6966218/93‑1 (MQ=255)
                                                                                gTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCATgg         >  1:59539/1‑93 (MQ=255)
                                                                                gTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCATgg         >  1:5769974/1‑93 (MQ=255)
                                                                                gTCTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCATgg         >  1:6544057/1‑93 (MQ=255)
                                                                                  cTGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAGCGGCCATGGcc       <  1:9142902/93‑1 (MQ=255)
                                                                                   tGATGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCATGGCCa      <  2:3700508/93‑1 (MQ=255)
                                                                                     aTGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCATGGCCACt    <  1:6070886/93‑1 (MQ=255)
                                                                                     aTGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCATGGCCACt    >  2:8927978/1‑93 (MQ=255)
                                                                                      tGCGCAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCATGGCCACTa   <  2:8869941/93‑1 (MQ=255)
                                                                                       gcgcAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCATGGCCACTAt  >  1:4721621/1‑93 (MQ=255)
                                                                                       gcgcAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCATGGCCACTAt  <  2:5603340/93‑1 (MQ=255)
                                                                                          |                                                                                         
CAATCCTCCCTGTACCCATGCGTAAATATCTCTTCCCGCGCCAGCACTGGGCTTATCCGCCCTGCGCAATTCGTTTTTCAGTCTGATGCGTAGTCCCGCTTCATCGTCAGCCAGTTGCGCCGCATAAGCAGAGGTAAGGCCAGAGGCAGCCGTCAGGCAAATAACGGCCATGGCCACTAT  >  NC_000913/1690687‑1690866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: