Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,705,521 C→T V193V (GTC→GTT)  b1629 → putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,705,5210CT99.5% 773.2 / ‑5.7 219V193V (GTC→GTT) b1629putative membrane protein
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base T (124/94);  total (124/95)
Fisher's exact test for biased strand distribution p-value = 4.34e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.69e-01

Only 100 of 225 total aligned reads displayed.

TAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAT  >  NC_000913/1705431‑1705610
                                                                                          |                                                                                         
tAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGt                                                                                         >  1:7996801/1‑93 (MQ=255)
 aaGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTa                                                                                        <  2:2221282/93‑1 (MQ=255)
  aGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTag                                                                                       >  1:8393891/1‑93 (MQ=255)
   gATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTaga                                                                                      >  1:7673141/1‑93 (MQ=255)
   gATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTaga                                                                                      <  1:5229688/93‑1 (MQ=255)
    aTTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTagag                                                                                     >  1:8034684/1‑93 (MQ=255)
     ttGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAgg                                                                                    <  2:7538012/93‑1 (MQ=255)
     tggAAACGTTGATTATCACCGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAgg                                                                                    <  2:3714311/91‑1 (MQ=255)
      tGAAACTTTGATTATCACCGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAggg                                                                                   <  2:7182925/93‑1 (MQ=255)
      tGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAggg                                                                                   >  1:9348458/1‑93 (MQ=255)
        aaaCGTTGATTATCAACGCGGCTGGGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTa                                                                                 <  2:2688273/93‑1 (MQ=255)
          aCGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTAtt                                                                               <  1:2357848/93‑1 (MQ=255)
          aCGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGCCTCAGGTTGTAGGGGGtttt                                                                               >  1:7022652/1‑93 (MQ=255)
             ttGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGc                                                                            >  2:3349620/1‑93 (MQ=255)
                 ttATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTc                                                                        >  2:9116537/1‑93 (MQ=255)
                  tATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCt                                                                       >  2:1756802/1‑93 (MQ=255)
                  tATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCt                                                                       <  1:9799091/93‑1 (MQ=255)
                  tATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCt                                                                       >  2:9381082/1‑93 (MQ=255)
                      aaCGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTgcg                                                                   >  2:1226397/1‑93 (MQ=255)
                        cgcgGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCa                                                                 <  2:3897583/93‑1 (MQ=255)
                        cgcgGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCa                                                                 >  1:8736975/1‑93 (MQ=255)
                         gcgGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCat                                                                <  2:7131710/93‑1 (MQ=255)
                            gCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGGGGGTATTCGCATTCTTGCGCATAtt                                                             >  2:7914908/1‑93 (MQ=255)
                            gCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATAtt                                                             >  1:9536809/1‑93 (MQ=255)
                            gCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATAtt                                                             >  1:8552534/1‑93 (MQ=255)
                             cTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTc                                                            <  2:9518869/93‑1 (MQ=255)
                               gAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTg                                                          <  1:9959486/93‑1 (MQ=255)
                               gAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTg                                                          >  2:5009799/1‑93 (MQ=255)
                               gAGTGCGAGCCGTACATTACCGCCGATCACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTg                                                          >  2:4340700/1‑93 (MQ=255)
                                 gTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCa                                                        <  1:5069099/93‑1 (MQ=255)
                                  tGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAg                                                       <  1:4295924/93‑1 (MQ=255)
                                   gCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGCTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGc                                                      >  1:1315557/1‑93 (MQ=255)
                                       gCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAcg                                                  <  1:6329466/93‑1 (MQ=255)
                                       gCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAcg                                                  <  1:1002262/93‑1 (MQ=255)
                                       gCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAcg                                                  <  1:9114756/93‑1 (MQ=255)
                                         cGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAcgcg                                                <  2:4050419/93‑1 (MQ=255)
                                         cGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCAcgcg                                                >  1:3072056/1‑93 (MQ=255)
                                          gTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGa                                               >  2:810791/1‑93 (MQ=255)
                                          gTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGGATTCGCATTCTTGCGCATATTCTGCAGCCACGCGa                                               >  2:279337/1‑93 (MQ=255)
                                            aCATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGaaa                                             >  2:6386340/1‑93 (MQ=255)
                                            aCATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGaaa                                             >  2:7317831/1‑93 (MQ=255)
                                             cATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCCGCCACGCGAAAt                                            >  2:5833331/1‑93 (MQ=255)
                                              aTTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAAtt                                           <  2:1362992/93‑1 (MQ=255)
                                              aTTACCGCCGATGACCGTTTGAGGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAAtt                                           <  1:5384919/93‑1 (MQ=255)
                                                 aCCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCtt                                        <  2:656149/93‑1 (MQ=255)
                                                  ccgccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTa                                       <  2:3200614/93‑1 (MQ=255)
                                                   cgccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTAt                                      <  1:2755668/93‑1 (MQ=255)
                                                    gccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATc                                     <  1:6885616/93‑1 (MQ=255)
                                                     ccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCg                                    <  1:5954382/93‑1 (MQ=255)
                                                     ccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCg                                    >  1:6004504/1‑93 (MQ=255)
                                                     ccgATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCg                                    <  2:863126/93‑1 (MQ=255)
                                                       gATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGTGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACTCGAAATTCTTATCGGc                                  >  1:1533068/1‑93 (MQ=255)
                                                       gATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGACACGCGAAATTCTTATccga                                  >  2:2920977/1‑90 (MQ=255)
                                                       gATGACCGTTTGATGCAGGATTGCGCGGCTCAGGGTGTAGAGGGAATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGc                                  >  1:1358427/1‑93 (MQ=255)
                                                        aTGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCa                                 <  2:5086350/93‑1 (MQ=255)
                                                        aTGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCa                                 >  2:3524837/1‑93 (MQ=255)
                                                        aTGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCa                                 >  1:5356457/1‑93 (MQ=255)
                                                        aTGACCGTGTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCa                                 <  1:5643944/93‑1 (MQ=255)
                                                         tGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCAt                                >  1:2712345/1‑93 (MQ=255)
                                                         tGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCAt                                >  1:2209826/1‑93 (MQ=255)
                                                         tGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCAt                                >  1:3810879/1‑93 (MQ=255)
                                                         tGACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCAt                                >  2:8549984/1‑93 (MQ=255)
                                                          gACCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCAtt                               <  1:7469989/93‑1 (MQ=255)
                                                           aCCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTg                              >  2:4939859/1‑93 (MQ=255)
                                                           aCCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTg                              >  2:1793187/1‑93 (MQ=255)
                                                           aCCGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTg                              <  1:8125934/93‑1 (MQ=255)
                                                            ccGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGa                             <  2:5039448/93‑1 (MQ=255)
                                                            ccGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGa                             >  1:6495012/1‑93 (MQ=255)
                                                             cGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGaa                            >  2:6255092/1‑93 (MQ=255)
                                                             cGTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGaa                            >  2:9615559/1‑93 (MQ=255)
                                                              gTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCGTATTCTGCAGCCACGCCAAATTCTTATCGGCATTGAAg                           >  1:4800249/1‑93 (MQ=255)
                                                              gTTTGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAg                           >  1:26310/1‑93 (MQ=255)
                                                               tttGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGa                          >  1:2229960/1‑93 (MQ=255)
                                                                ttGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGAt                         <  1:6268101/93‑1 (MQ=255)
                                                                 tGATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATa                        <  1:2850454/93‑1 (MQ=255)
                                                                  gATGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTATTATCGGCATTGAAGATaa                       >  2:5336573/1‑93 (MQ=255)
                                                                   aTGCAGGATCGCGCGGCTCAGGTTGTAGAGTGTATTCGCATTCTTGCTCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAAc                      <  1:1932767/93‑1 (MQ=255)
                                                                    tGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACa                     >  2:5195297/1‑93 (MQ=255)
                                                                    tGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACa                     <  1:7315239/93‑1 (MQ=255)
                                                                    tGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACa                     >  2:6810299/1‑93 (MQ=255)
                                                                    tGCAGGATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACa                     >  1:314913/1‑93 (MQ=255)
                                                                    tGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACa                     <  1:1800296/93‑1 (MQ=255)
                                                                       gggATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAAc                  <  2:8171040/92‑1 (MQ=255)
                                                                        ggATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAAcc                 <  1:7227154/93‑1 (MQ=255)
                                                                        ggATTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAAcc                 >  2:5650155/1‑93 (MQ=255)
                                                                          aTTGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGc               >  2:2487217/1‑93 (MQ=255)
                                                                           ttGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCa              <  1:8942827/93‑1 (MQ=255)
                                                                            tGCGCGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAg             >  1:4821036/1‑93 (MQ=255)
                                                                             gcgcGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAgg            <  1:4718044/93‑1 (MQ=255)
                                                                             gcgcGGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAgg            >  2:860629/1‑93 (MQ=255)
                                                                              cgcgGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGc           <  1:4359871/93‑1 (MQ=255)
                                                                               gcgGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCg          >  1:6749815/1‑93 (MQ=255)
                                                                               gcgGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCg          >  1:3344279/1‑93 (MQ=255)
                                                                               gcgGCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCg          <  2:4548833/93‑1 (MQ=255)
                                                                                  gCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGAtt       >  2:6635342/1‑93 (MQ=255)
                                                                                  gCTCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATAGGCATTGAAGATAACAAACCGCAGGCGAtt       <  2:2009577/93‑1 (MQ=255)
                                                                                   cTCAGGGTGTAGAGGGGATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGAttt      >  2:1610206/1‑93 (MQ=255)
                                                                                    tCAGGTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTc     >  2:8033380/1‑93 (MQ=255)
                                                                                       ggTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAt  <  1:4188845/93‑1 (MQ=255)
                                                                                       ggTTGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAt  <  1:7160940/93‑1 (MQ=255)
                                                                                          |                                                                                         
TAAGATTGAAACGTTGATTATCAACGCGGCTGAGTGCGAGCCGTACATTACCGCCGATGACCGTTTGATGCAGGATTGCGCGGCTCAGGTCGTAGAGGGTATTCGCATTCTTGCGCATATTCTGCAGCCACGCGAAATTCTTATCGGCATTGAAGATAACAAACCGCAGGCGATTTCCAT  >  NC_000913/1705431‑1705610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑