Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 230,556 A→G M109T (ATG→ACG)  yafC ← putative transcriptional regulator LYSR‑type

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913230,5560AG99.8% 1311.4 / ‑5.3 403M109T (ATG→ACG) yafCputative transcriptional regulator LYSR‑type
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base G (189/213);  total (190/213)
Fisher's exact test for biased strand distribution p-value = 4.71e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.97e-01

Only 100 of 416 total aligned reads displayed.

TTTCTTTCGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCATCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGATTCTGC  >  NC_000913/230466‑230644
                                                                                          |                                                                                        
tttctttcGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTc                                                                                        <  2:6183204/93‑1 (MQ=255)
 ttctttcGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCa                                                                                       <  1:2944881/93‑1 (MQ=255)
   ctttcGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGa                                                                                     >  1:8937709/1‑93 (MQ=255)
     ttcGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGaaa                                                                                   <  2:4309155/93‑1 (MQ=255)
     tgcGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGaaa                                                                                   <  2:1822696/91‑1 (MQ=255)
       cGATCAAATTAATAATCGTTTCGGAGGAGACGAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGt                                                                                 <  1:5157278/93‑1 (MQ=255)
        gATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTg                                                                                >  1:1300680/1‑93 (MQ=255)
        gATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTg                                                                                >  1:5838845/1‑93 (MQ=255)
         aTCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTgc                                                                               >  1:9203430/1‑93 (MQ=255)
          tCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTgca                                                                              <  2:7530266/93‑1 (MQ=255)
          tCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTgca                                                                              <  2:6216897/93‑1 (MQ=255)
            aaaTTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTgcagc                                                                            <  2:3135203/93‑1 (MQ=255)
            aaaTTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTgcagc                                                                            >  1:2152074/1‑93 (MQ=255)
            aaaTTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTgcagc                                                                            >  2:5556397/1‑93 (MQ=255)
             aaTTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTgcagca                                                                           <  2:1427771/93‑1 (MQ=255)
             aaTTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTgcagca                                                                           >  2:8465963/1‑93 (MQ=255)
              aTTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGcac                                                                          >  2:530615/1‑93 (MQ=255)
               ttAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGcacc                                                                         >  2:1633098/1‑93 (MQ=255)
                taataaTCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGcacca                                                                        >  1:5482094/1‑93 (MQ=255)
                 aataatCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGcaccac                                                                       <  2:7363525/93‑1 (MQ=255)
                 aataatCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGcaccac                                                                       >  1:9457187/1‑93 (MQ=255)
                   taatCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTg                                                                     <  1:102500/93‑1 (MQ=255)
                    aatCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACttg                                                                    >  2:8041846/1‑91 (MQ=255)
                    aatCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTgg                                                                    >  2:5114937/1‑93 (MQ=255)
                       cGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGt                                                                 <  1:8363178/93‑1 (MQ=255)
                       cGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGt                                                                 <  2:7707982/93‑1 (MQ=255)
                        gTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGtt                                                                >  1:4663891/1‑93 (MQ=255)
                        gTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGtt                                                                <  1:3304055/93‑1 (MQ=255)
                        gTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGtt                                                                <  1:9363454/93‑1 (MQ=255)
                        gTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGtt                                                                <  1:1728209/93‑1 (MQ=255)
                        gTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGAAAGCGTTCACGGAAAGGCTTAATTAACGGCGTCATAAAGTGCAGCACCACTGGAGtt                                                                >  1:4139155/1‑93 (MQ=255)
                          ttCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGc                                                              <  1:8113818/93‑1 (MQ=255)
                           tCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCg                                                             >  1:8709805/1‑93 (MQ=255)
                             ggaggaGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGc                                                           >  2:2253886/1‑93 (MQ=255)
                             ggaggaGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGc                                                           >  1:2326907/1‑93 (MQ=255)
                             ggaggaGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGc                                                           >  2:3405775/1‑93 (MQ=255)
                              gaggagACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCa                                                          >  1:9243003/1‑93 (MQ=255)
                              gaggagACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCa                                                          <  1:3950437/93‑1 (MQ=255)
                               aggagACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCAt                                                         >  1:6286015/1‑93 (MQ=255)
                                  agaCTAGCGATAAATTAACTTCCGCATAGCGTTCACGGAAATGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTAGAGTTGCGGCACCGa                                                      <  2:7104643/93‑1 (MQ=255)
                                    aCTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATc                                                    >  2:9729199/1‑93 (MQ=255)
                                    aCTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATc                                                    >  1:4080204/1‑93 (MQ=255)
                                     cTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATcc                                                   >  1:7894056/1‑93 (MQ=255)
                                     cTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATcc                                                   >  1:6387155/1‑93 (MQ=255)
                                      tAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCg                                                  >  2:3235710/1‑93 (MQ=255)
                                      tAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCg                                                  >  1:4002354/1‑93 (MQ=255)
                                       aGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGt                                                 >  2:2144495/1‑93 (MQ=255)
                                          gACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAAc                                              <  2:2584411/93‑1 (MQ=255)
                                           aCAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACa                                             <  2:3041847/93‑1 (MQ=255)
                                           aCAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACa                                             >  2:4680916/1‑93 (MQ=255)
                                           aCAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACa                                             <  1:4562400/93‑1 (MQ=255)
                                             aaaGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCCCCACTGGAGTTGCGGCATCGATCCGTAACAGt                                           >  1:3008570/1‑93 (MQ=255)
                                             aaaGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGt                                           <  1:8258243/93‑1 (MQ=255)
                                              aaGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTc                                          <  2:2474519/93‑1 (MQ=255)
                                              aaGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTc                                          <  1:97124/93‑1 (MQ=255)
                                              aaGTGACTTCCGGATAGCGTTCAAGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTc                                          >  2:9674708/1‑93 (MQ=255)
                                               aGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTcc                                         >  2:2002522/1‑93 (MQ=255)
                                                 tGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCAc                                       >  1:8426771/1‑93 (MQ=255)
                                                 tGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCAc                                       <  2:72850/93‑1 (MQ=255)
                                                 tGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCAATCCGTAACAGTCCAc                                       <  1:7132870/93‑1 (MQ=255)
                                                  gACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCAcg                                      >  1:4254859/1‑93 (MQ=255)
                                                  gACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCAcg                                      <  2:6266551/93‑1 (MQ=255)
                                                  gACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCAcg                                      >  2:6457199/1‑93 (MQ=255)
                                                   aCTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCAcgc                                     <  1:3497143/93‑1 (MQ=255)
                                                   aCTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCAcgc                                     >  2:4155308/1‑93 (MQ=255)
                                                    cTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCAcgcg                                    >  2:2928456/1‑93 (MQ=255)
                                                    cTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCAcgcg                                    <  1:6687936/93‑1 (MQ=255)
                                                       ccGGATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGgtg                                 <  2:6892021/93‑1 (MQ=255)
                                                         ggATAGCGTTCACGGAAAGGTTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTa                               <  1:3770298/93‑1 (MQ=255)
                                                         ggATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTa                               <  2:9123385/93‑1 (MQ=255)
                                                          gATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTAt                              >  2:7843407/1‑93 (MQ=255)
                                                          gATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTAt                              <  2:6699916/93‑1 (MQ=255)
                                                          gATAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGAGGTGTAt                              >  2:2791485/1‑93 (MQ=255)
                                                            tAGCGTTCGCGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTa                            <  1:6562213/93‑1 (MQ=255)
                                                            tAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTa                            <  1:1186844/93‑1 (MQ=255)
                                                            tAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTa                            >  2:1233877/1‑93 (MQ=255)
                                                            tAGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCAACGCGGTGTAttc                            >  1:3194045/1‑92 (MQ=255)
                                                             aGCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTAc                           >  2:1105308/1‑93 (MQ=255)
                                                              gCGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTAcg                          >  2:3929800/1‑93 (MQ=255)
                                                               cGTTCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTAcgc                         <  1:5548152/93‑1 (MQ=255)
                                                                 ttCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGt                       >  2:6621324/1‑93 (MQ=255)
                                                                  tCACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGtc                      <  2:9477188/93‑1 (MQ=255)
                                                                   cACGGAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGcct                     >  1:5271558/1‑93 (MQ=255)
                                                                      ggAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCa                  <  2:1301439/93‑1 (MQ=255)
                                                                      ggAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCa                  >  2:8724356/1‑93 (MQ=255)
                                                                      ggAAAGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCa                  <  2:8337103/93‑1 (MQ=255)
                                                                         aaGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATaa               <  1:5081474/93‑1 (MQ=255)
                                                                          aGGCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAAt              >  1:4400907/1‑93 (MQ=255)
                                                                           ggCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAAtt             <  1:7490592/93‑1 (MQ=255)
                                                                           ggCTTAATTAACGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAAtt             >  1:9968609/1‑93 (MQ=255)
                                                                               taattaaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTg         >  1:141286/1‑93 (MQ=255)
                                                                                aattaaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGa        >  2:5981881/1‑93 (MQ=255)
                                                                                aattaaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGa        <  2:3676090/93‑1 (MQ=255)
                                                                                 attaaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGAt       >  1:2781411/1‑93 (MQ=255)
                                                                                 attaaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGAt       >  1:5993551/1‑93 (MQ=255)
                                                                                  ttaaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGAtt      <  1:2675637/93‑1 (MQ=255)
                                                                                  ttaaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGAtt      >  1:2761427/1‑93 (MQ=255)
                                                                                  ttaaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGAtt      <  2:9234986/93‑1 (MQ=255)
                                                                                   taaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGATTc     <  1:453179/93‑1 (MQ=255)
                                                                                    aaCGGCGTCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGATTCt    <  1:9609065/93‑1 (MQ=255)
                                                                                          |                                                                                        
TTTCTTTCGATCAAATTAATAATCGTTTCGGAGGAGACTAGCGACAAAGTGACTTCCGGATAGCGTTCACGGAAAGGCTTAATTAACGGCATCAGAAAGTGCAGCACCACTGGAGTTGCGGCATCGATCCGTAACAGTCCACGCGGTGTATTACGCGTCTCCATAATTTCTGATTCTGC  >  NC_000913/230466‑230644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: