Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,143,530 T→C L748P (CTG→CCG)  yegE → putative sensor‑type protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,143,5300TC99.6% 818.8 / ‑5.2 255L748P (CTG→CCG) yegEputative sensor‑type protein
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base C (114/140);  total (114/141)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.44e-01

Only 100 of 265 total aligned reads displayed.

TTATCGATCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCTGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAATGTTGAAAGCGCGC  >  NC_000913/2143440‑2143619
                                                                                          |                                                                                         
ttATCGATCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGCACTGGCGTCGTTAATGCCGa                                                                                         >  1:1037678/1‑93 (MQ=255)
ttATCGATCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGa                                                                                         >  1:6753823/1‑93 (MQ=255)
ttATCGATCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGa                                                                                         <  2:5943926/93‑1 (MQ=255)
 tATCGATCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGATGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAg                                                                                        >  1:3472295/1‑93 (MQ=255)
 tATCGATCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAg                                                                                        >  2:5681239/1‑93 (MQ=255)
 tATCGATCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAg                                                                                        >  2:3544903/1‑93 (MQ=255)
  aTCGATCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGt                                                                                       <  2:1013007/93‑1 (MQ=255)
   tCGATCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTa                                                                                      <  1:2524289/93‑1 (MQ=255)
   tCGATCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTa                                                                                      <  2:7283063/93‑1 (MQ=255)
   tCGATCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTa                                                                                      >  2:7408253/1‑93 (MQ=255)
   tCGATCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTa                                                                                      <  1:4439922/93‑1 (MQ=255)
     gATCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTAtg                                                                                    >  2:7466400/1‑93 (MQ=255)
     gATCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTAtg                                                                                    >  1:3861981/1‑93 (MQ=255)
      aTCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTAtgc                                                                                   <  2:5241373/93‑1 (MQ=255)
       tCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGTCGAGTAtgct                                                                                  >  2:46348/1‑93 (MQ=255)
       tCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTAtgct                                                                                  >  2:669296/1‑93 (MQ=255)
       tCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTAtgct                                                                                  >  1:4048725/1‑93 (MQ=255)
       tCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTAtgct                                                                                  <  2:3354459/93‑1 (MQ=255)
           gATCGCTTTAAAGCGGTGAATGACAGCGCTGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGGATGCTGCGt                                                                              >  1:3395273/1‑93 (MQ=255)
           gATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGt                                                                              >  1:1810781/1‑93 (MQ=255)
            aTCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGtt                                                                             >  2:2762717/1‑93 (MQ=255)
             tCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTc                                                                            >  2:2312006/1‑93 (MQ=255)
              cGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTcc                                                                           >  2:6700919/1‑93 (MQ=255)
               gCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCa                                                                          >  2:1610529/1‑93 (MQ=255)
                cTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAg                                                                         <  2:6437096/93‑1 (MQ=255)
                 tttAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGc                                                                        <  2:7945481/93‑1 (MQ=255)
                   tAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGa                                                                      >  1:7329556/1‑93 (MQ=255)
                   tAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGa                                                                      <  1:7904596/93‑1 (MQ=255)
                    aaaGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGAc                                                                     <  2:6344797/93‑1 (MQ=255)
                    aaaGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGAc                                                                     >  1:4233129/1‑93 (MQ=255)
                     aaGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACg                                                                    <  1:2684165/93‑1 (MQ=255)
                      aGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACgg                                                                   >  1:5385663/1‑92 (MQ=255)
                       gCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTg                                                                  >  2:9043297/1‑93 (MQ=255)
                       gCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTg                                                                  >  1:5023858/1‑93 (MQ=255)
                        cGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGc                                                                 <  2:9758465/93‑1 (MQ=255)
                         ggTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCt                                                                <  1:9344039/93‑1 (MQ=255)
                          gTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTg                                                               <  1:6941459/93‑1 (MQ=255)
                           tGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTgg                                                              >  1:8563116/1‑93 (MQ=255)
                             aaTGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGgcg                                                            <  1:9222925/93‑1 (MQ=255)
                             aaTGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGgcg                                                            >  1:3526371/1‑93 (MQ=255)
                               tGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGcgcg                                                          >  2:3810475/1‑93 (MQ=255)
                                gACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGcgcgc                                                         >  1:7923362/1‑92 (MQ=255)
                                 aCAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCTAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGAc                                                        >  2:5116927/1‑93 (MQ=255)
                                 aCAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGAc                                                        <  2:2092180/93‑1 (MQ=255)
                                   aGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTc                                                      <  2:3973041/93‑1 (MQ=255)
                                    gcgcCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCg                                                     >  2:4352420/1‑93 (MQ=255)
                                    gcgcCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGACGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCg                                                     <  2:8879894/93‑1 (MQ=255)
                                       ccGGTCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTg                                                  <  2:5746506/93‑1 (MQ=255)
                                       ccGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTg                                                  <  2:704544/93‑1 (MQ=255)
                                         gggCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTgtg                                                >  2:3855946/1‑91 (MQ=255)
                                         gggCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGCGCTGGCGAGACTCGGTggg                                                >  2:6564419/1‑93 (MQ=255)
                                          ggCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTgggg                                               >  1:7795059/1‑93 (MQ=255)
                                          ggCAGGCGGCGGGTGACGCCGTGCTGCGCGAACTGGCGTCGTGAATGCCGAGCACGCTGCGGTCCAGCGACGGGCTGGCGCGACTCGgggggg                                               >  2:7719895/1‑93 (MQ=255)
                                            cATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGAt                                             <  1:4926955/93‑1 (MQ=255)
                                             aTGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATg                                            >  1:6517832/1‑93 (MQ=255)
                                              tGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGCCTCGGTGGGGATGa                                           >  2:6048289/1‑93 (MQ=255)
                                                cggcggGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGGTGAAt                                         >  2:1246823/1‑93 (MQ=255)
                                                 ggcggGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAAtt                                        >  2:1796964/1‑93 (MQ=255)
                                                 ggcggGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAAtt                                        >  1:5154360/1‑93 (MQ=255)
                                                  gcggGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAAttt                                       <  1:190232/93‑1 (MQ=255)
                                                  gcggGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAAttt                                       <  2:4128886/93‑1 (MQ=255)
                                                    gggTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTgg                                     >  2:3564988/1‑93 (MQ=255)
                                                     ggTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGt                                    <  2:8289697/93‑1 (MQ=255)
                                                      gTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTc                                   <  2:2669024/93‑1 (MQ=255)
                                                      gTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTc                                   <  1:4734235/93‑1 (MQ=255)
                                                       tGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTct                                  >  1:1583193/1‑93 (MQ=255)
                                                        gACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTctg                                 >  2:7802830/1‑93 (MQ=255)
                                                         aCGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTctgc                                <  2:8414609/93‑1 (MQ=255)
                                                         aCGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTctgc                                >  1:9927262/1‑93 (MQ=255)
                                                          cGCTTTGCTGCGCGTACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTctgct                               <  1:8396184/93‑1 (MQ=255)
                                                          cGCTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTctgct                               <  2:7130883/93‑1 (MQ=255)
                                                            cTTTGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCtgctgc                             <  2:2034081/93‑1 (MQ=255)
                                                             tttGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTgctgct                            >  2:3702379/1‑93 (MQ=255)
                                                              ttGCTGCGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTa                           <  1:9988419/93‑1 (MQ=255)
                                                               tgctgcGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTAc                          >  1:2929807/1‑93 (MQ=255)
                                                                gctgcGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTAcc                         <  1:7422682/93‑1 (MQ=255)
                                                                 ctgcGCGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCa                        <  1:1387863/93‑1 (MQ=255)
                                                                   gcgcGAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACACGGTGGGGATGAATTTGGTCTGCTGCTACCAgc                      >  1:683911/1‑92 (MQ=255)
                                                                    cgcgAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGAc                     <  2:213601/93‑1 (MQ=255)
                                                                    cgcgAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGAc                     <  2:7699745/93‑1 (MQ=255)
                                                                     gcgAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACt                    <  1:8754198/93‑1 (MQ=255)
                                                                      cgAACTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTg                   >  2:3646173/1‑93 (MQ=255)
                                                                         aCTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTaa                <  2:8237467/93‑1 (MQ=255)
                                                                         aCTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTaa                <  2:1556847/93‑1 (MQ=255)
                                                                          cTGGCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAAt               <  1:4506357/93‑1 (MQ=255)
                                                                            ggCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTGTGCTGCTACCAGACTGTAATGt             <  1:9415188/93‑1 (MQ=255)
                                                                            ggCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAATGt             >  2:5506628/1‑93 (MQ=255)
                                                                             gCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAATGtt            <  1:7338119/93‑1 (MQ=255)
                                                                             gCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAATGtt            <  1:9498278/93‑1 (MQ=255)
                                                                             gCGTCGTTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAATGtt            <  2:1990170/93‑1 (MQ=255)
                                                                               gtcgtTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAATGTTGa          >  1:797549/1‑93 (MQ=255)
                                                                               gtcatTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAATGTTGa          <  1:5593033/93‑1 (MQ=255)
                                                                                tcgtTAATGCTGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAATGTTGaa         <  1:3172473/93‑1 (MQ=255)
                                                                                tcgtTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAATGTTGaa         >  2:429086/1‑93 (MQ=255)
                                                                                 cgtTAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAATGTTGaaa        >  2:2210313/1‑93 (MQ=255)
                                                                                   ttAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAATGTTGAAAgc      <  1:1706180/93‑1 (MQ=255)
                                                                                   ttAATGCCGAGTATGCAGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAATGTTGAAAgc      >  1:2213599/1‑93 (MQ=255)
                                                                                    tAATGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAATGTTGAAAgcg     <  2:5905200/93‑1 (MQ=255)
                                                                                      aTGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAATGTTGAAAgcgcg   <  2:6873749/93‑1 (MQ=255)
                                                                                       tGCCGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAATGTTGAAAgcgcgc  <  1:7093775/93‑1 (MQ=255)
                                                                                          |                                                                                         
TTATCGATCTTGATCGCTTTAAAGCGGTGAATGACAGCGCCGGGCATGCGGCGGGTGACGCTTTGCTGCGCGAACTGGCGTCGTTAATGCTGAGTATGCTGCGTTCCAGCGACGTGCTGGCGCGACTCGGTGGGGATGAATTTGGTCTGCTGCTACCAGACTGTAATGTTGAAAGCGCGC  >  NC_000913/2143440‑2143619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: