BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,666,143	A→G	I258I (ATT→ATC)	hcaR ←	HcaR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,666,143	0	A	G	100.0%	1114.1 / NA	340	I258I (ATT→ATC)	hcaR	HcaR
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (114/226); total (114/226)

Only 100 of 351 total aligned reads displayed.

CTGCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTCAT  >  NC_000913/2666053‑2666232

cTGCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGAt                                                                                         <  2:1023357/93‑1 (MQ=255)

cTGCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATC‑CCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATg                                                                                        >  1:4878126/1‑93 (MQ=255)

 tGCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATg                                                                                        <  1:4389295/93‑1 (MQ=255)

  gCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATgg                                                                                       <  2:4453692/93‑1 (MQ=255)

   cacaATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATggg                                                                                      <  1:1986561/93‑1 (MQ=255)

    acaATGGCGATGAGATCGCGTAGTGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGCTGGGa                                                                                     <  1:8965372/93‑1 (MQ=255)

     caATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGAc                                                                                    <  1:9767532/93‑1 (MQ=255)

      aaTGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACg                                                                                   >  2:2281490/1‑93 (MQ=255)

       aTGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGa                                                                                  <  1:1243420/93‑1 (MQ=255)

       aTGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGa                                                                                  >  2:9598525/1‑93 (MQ=255)

        tGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGaa                                                                                 <  2:6544211/93‑1 (MQ=255)

        tGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGaa                                                                                 >  2:5559203/1‑93 (MQ=255)

        tGGCGATGAAATCGCATAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGaa                                                                                 <  1:6503460/93‑1 (MQ=255)

         ggCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGaaa                                                                                <  2:6788218/93‑1 (MQ=255)

          gCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGaaaa                                                                               >  1:6067070/1‑93 (MQ=255)

             aTGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAaaca                                                                            <  1:8158703/93‑1 (MQ=255)

              tGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAaacaa                                                                           <  1:711102/93‑1 (MQ=255)

               gAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAaacaac                                                                          <  2:5081336/93‑1 (MQ=255)

                aaaTCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAAcc                                                                         <  1:8032342/93‑1 (MQ=255)

                aaaTCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAAcc                                                                         <  1:28746/93‑1 (MQ=255)

                 aaTCGCGTAAATCCGGCTTCCACCCCCCTTTCCTCCCCGCCATCAGGAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCt                                                                        <  1:2686813/93‑1 (MQ=255)

                  aTCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTg                                                                       <  2:9390416/93‑1 (MQ=255)

                     gcgTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTcc                                                                    >  2:7736072/1‑93 (MQ=255)

                        tAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCgga                                                                 >  1:9296286/1‑92 (MQ=255)

                        tAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGt                                                                 <  1:1492853/93‑1 (MQ=255)

                        tAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGt                                                                 <  2:4276449/93‑1 (MQ=255)

                        tAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGt                                                                 <  2:9506901/93‑1 (MQ=255)

                          aTGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTAt                                                               >  1:7392239/1‑93 (MQ=255)

                           tGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTGCGGCGATGGGACGAAAAACAACCTGTCCGGTAtt                                                              >  2:742193/1‑93 (MQ=255)

                           tGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTAtt                                                              <  1:4300308/93‑1 (MQ=255)

                             ccGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTaa                                                            >  1:5052492/1‑93 (MQ=255)

                                gCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAat                                                         <  2:1663015/93‑1 (MQ=255)

                                 cTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAatt                                                        <  2:6028276/93‑1 (MQ=255)

                                 cTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAatt                                                        <  1:5455016/93‑1 (MQ=255)

                                  ttCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAatta                                                       >  2:7224971/1‑93 (MQ=255)

                                  ttCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAatta                                                       <  1:8788156/93‑1 (MQ=255)

                                   tCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAattat                                                      <  2:5313480/93‑1 (MQ=255)

                                      tctcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCa                                                   >  2:2902095/1‑93 (MQ=255)

                                       ctcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCat                                                  <  2:1246109/93‑1 (MQ=255)

                                       ctcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCat                                                  <  1:7644347/93‑1 (MQ=255)

                                        tcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCata                                                 <  1:1604699/93‑1 (MQ=255)

                                        tcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCata                                                 >  2:458513/1‑93 (MQ=255)

                                        tcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCata                                                 <  2:1703872/93‑1 (MQ=255)

                                        tcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCata                                                 >  1:2428863/1‑93 (MQ=255)

                                        tcCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCata                                                 >  2:3642483/1‑93 (MQ=255)

                                        cccccTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCata                                                 <  1:3187270/92‑1 (MQ=255)

                                         ccccTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCatat                                                <  2:3992720/93‑1 (MQ=255)

                                         ccccTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCatat                                                <  1:6852552/93‑1 (MQ=255)

                                         ccccTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCatat                                                >  1:3929635/1‑93 (MQ=255)

                                         ccccCTGCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTGCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCatat                                                <  1:519305/93‑1 (MQ=255)

                                          cccTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCAtata                                               <  2:4328203/93‑1 (MQ=255)

                                          cccGTTCTACCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCAtata                                               <  1:2207260/93‑1 (MQ=255)

                                           ccTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATaa                                              >  1:7880592/1‑93 (MQ=255)

                                            cTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAAc                                             <  1:7520093/93‑1 (MQ=255)

                                             tttCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAAcc                                            <  1:145259/93‑1 (MQ=255)

                                             tttCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAAcc                                            <  2:3350870/93‑1 (MQ=255)

                                             tttCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAAcc                                            >  1:3122557/1‑93 (MQ=255)

                                                cttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCggg                                         <  2:6818118/93‑1 (MQ=255)

                                                 ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGt                                        <  1:7011523/93‑1 (MQ=255)

                                                 ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGt                                        <  1:3848460/93‑1 (MQ=255)

                                                 ttcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGt                                        >  2:2235868/1‑93 (MQ=255)

                                                  tcCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTa                                       <  1:589083/93‑1 (MQ=255)

                                                    cACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATc                                     <  1:9555826/93‑1 (MQ=255)

                                                      cGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCaa                                   <  2:9080524/93‑1 (MQ=255)

                                                       gCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCaaa                                  >  2:2116650/1‑93 (MQ=255)

                                                       gCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCaaa                                  <  2:5466189/93‑1 (MQ=255)

                                                        ccATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAg                                 <  1:454097/93‑1 (MQ=255)

                                                         cATCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGt                                <  1:4129699/93‑1 (MQ=255)

                                                           tCAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGAATCAAAGTGa                              >  2:410439/1‑93 (MQ=255)

                                                            cAGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGAc                             <  2:8748982/93‑1 (MQ=255)

                                                             aGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACg                            <  2:6284721/93‑1 (MQ=255)

                                                             aGTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACg                            <  2:862028/93‑1 (MQ=255)

                                                              gTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGc                           <  2:3118574/93‑1 (MQ=255)

                                                              gTAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGc                           >  2:7067599/1‑93 (MQ=255)

                                                               tAAAGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGcc                          <  2:8283173/93‑1 (MQ=255)

                                                                 aaacAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCa                        <  2:1988996/90‑1 (MQ=255)

                                                                  aGCAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAg                       >  2:9667463/1‑93 (MQ=255)

                                                                    cAATGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGcc                     <  1:9374723/93‑1 (MQ=255)

                                                                     aaTGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGAGACGCCCAGccc                    >  2:5803485/1‑93 (MQ=255)

                                                                       tGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCa                  >  1:1098763/1‑93 (MQ=255)

                                                                       tGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCa                  <  1:1474387/93‑1 (MQ=255)

                                                                       tGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCa                  <  1:3302229/93‑1 (MQ=255)

                                                                       tGGAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCa                  <  1:5593904/93‑1 (MQ=255)

                                                                        ggAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCAt                 <  1:2822657/93‑1 (MQ=255)

                                                                        ggAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCAt                 <  1:9627567/93‑1 (MQ=255)

                                                                         gAAGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATg                >  2:9178076/1‑93 (MQ=255)

                                                                           aGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGcc              <  1:627329/93‑1 (MQ=255)

                                                                           aGGCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGcc              >  1:77738/1‑93 (MQ=255)

                                                                            ggCACATTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGccc             >  1:3589647/1‑93 (MQ=255)

                                                                               acaTTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCccacc          >  1:6589072/1‑93 (MQ=255)

                                                                                caTTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCccacca         <  1:9595098/93‑1 (MQ=255)

                                                                                caTTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCccacca         <  1:4841918/93‑1 (MQ=255)

                                                                                caTTGCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCccacca         <  2:8445560/93‑1 (MQ=255)

                                                                                 aTTTCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAg        <  2:2627053/93‑1 (MQ=255)

                                                                                   ttCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGAt      <  1:5986648/93‑1 (MQ=255)

                                                                                    tCCGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGAtt     <  1:5299414/93‑1 (MQ=255)

                                                                                     ccGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTc    >  1:6330318/1‑93 (MQ=255)

                                                                                     ccGGCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTc    >  2:3227498/1‑93 (MQ=255)

                                                                                      cGGCGATGGGACGAAATACAGCCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTCa   <  2:933424/93‑1 (MQ=255)

                                                                                       ggCGATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTCAt  <  2:1309283/93‑1 (MQ=255)

CTGCACAATGGCGATGAAATCGCGTAATGCCGGCTTCATCTCCCCTTTCTTCCACGCCATCAGTAAAGCAATGGAAGGCACATTTCCGGCAATGGGACGAAAAACAACCTGTCCGGTATTAAAATTATTCATATAACCGGGTATCAAAGTGACGCCCAGCCCCATGCCCACCAGATTCAT  >  NC_000913/2666053‑2666232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`