BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,954,264	A→T	D881E (GAT→GAA)	ptr ←	protease III

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,954,264	0	A	T	99.8%	1430.2 / ‑4.4	395	D881E (GAT→GAA)	ptr	protease III
Reads supporting (aligned to +/- strand): ref base A (0/1); new base T (204/190); total (204/191)
Fisher's exact test for biased strand distribution p-value = 4.84e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.00e-01

Only 100 of 411 total aligned reads displayed.

CTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGATCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGC  >  NC_000913/2954174‑2954353

 tGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCg                                                                                        >  1:6386243/1‑93 (MQ=255)

  gATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCGGCGTTCGa                                                                                       >  2:6972936/1‑93 (MQ=255)

   aTGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGaa                                                                                      >  1:7187816/1‑93 (MQ=255)

   aTGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGaa                                                                                      >  2:642658/1‑93 (MQ=255)

    tGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGaaa                                                                                     <  1:2972483/93‑1 (MQ=255)

    tGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGATCGaaa                                                                                     <  2:3207165/93‑1 (MQ=255)

      gaagaaATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATc                                                                                   >  2:7855580/1‑93 (MQ=255)

       aagaaATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCt                                                                                  <  1:2277522/93‑1 (MQ=255)

       aagaaATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCt                                                                                  <  2:44356/93‑1 (MQ=255)

        agaaATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCtt                                                                                 >  2:3711457/1‑93 (MQ=255)

         gaaATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCttt                                                                                <  2:8036853/93‑1 (MQ=255)

         gaaATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCttt                                                                                >  1:7569618/1‑93 (MQ=255)

         aaaaTCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCttt                                                                                <  2:8584921/92‑1 (MQ=255)

          aaaTCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTa                                                                               >  1:8840105/1‑93 (MQ=255)

          aaaTCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTa                                                                               <  2:2595250/93‑1 (MQ=255)

          aaaTCAGCAAGTTTGTGCGGCGTCAGCAGTTTTATCTGGGCCACGACTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTa                                                                               >  2:4832195/1‑93 (MQ=255)

           aaTCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTAc                                                                              >  2:8174629/1‑93 (MQ=255)

           aaTCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTAc                                                                              >  2:3384601/1‑93 (MQ=255)

           aaTCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTAc                                                                              <  2:2761175/93‑1 (MQ=255)

             tCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACtt                                                                            >  2:9120630/1‑93 (MQ=255)

              cAGCAAGTTTTTCCCGGCTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTa                                                                           <  2:7120096/93‑1 (MQ=255)

               aGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTaa                                                                          <  1:512529/93‑1 (MQ=255)

               aGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTaa                                                                          <  2:7701584/93‑1 (MQ=255)

                  aaGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACtt                                                                       <  2:724532/93‑1 (MQ=255)

                   aGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTc                                                                      >  1:7255491/1‑93 (MQ=255)

                    gTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCg                                                                     <  1:424200/93‑1 (MQ=255)

                     tttttGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGa                                                                    <  1:8570791/93‑1 (MQ=255)

                      ttttGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGAt                                                                   <  2:8335725/93‑1 (MQ=255)

                       tttGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATg                                                                  <  1:9871025/93‑1 (MQ=255)

                       tttGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATg                                                                  <  1:8067891/93‑1 (MQ=255)

                       tttGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATg                                                                  <  2:4335184/93‑1 (MQ=255)

                           tggcgTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGcttc                                                              <  2:9296926/92‑1 (MQ=255)

                           cggcgTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGcttc                                                              <  2:1343866/93‑1 (MQ=255)

                             gcgTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGcttctt                                                            >  2:3486954/1‑93 (MQ=255)

                             gcgTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGcttctt                                                            >  1:3969084/1‑93 (MQ=255)

                                  agcagTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCg                                                       >  1:9124062/1‑93 (MQ=255)

                                   gcagTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGa                                                      >  1:9757836/1‑93 (MQ=255)

                                      gTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCg                                                   >  2:9345134/1‑93 (MQ=255)

                                       ttttATCTGGGCCACGATTTTGTCACGCGAATCGAAGGGCATATTGCCGCGCTCGCAATCATTACTTAACTTCGATGCTTCTTCGCCGAGCGt                                                  >  2:5634648/1‑93 (MQ=255)

                                       ttttATCTGGGCCACGATTTTATCACGCGAATCGAGGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGt                                                  >  2:1215768/1‑93 (MQ=255)

                                       ttttATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGt                                                  >  2:3065622/1‑93 (MQ=255)

                                        tttATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGtt                                                 <  2:2313645/93‑1 (MQ=255)

                                        tctATCTGGGCGACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGtt                                                 <  1:9481298/91‑1 (MQ=255)

                                          tATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTg                                               <  2:4565434/93‑1 (MQ=255)

                                          tATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTg                                               >  2:2488570/1‑93 (MQ=255)

                                          tATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTg                                               >  1:3728/1‑93 (MQ=255)

                                          tATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTg                                               >  1:5906407/1‑93 (MQ=255)

                                           aTCTGGGCCACGATTTTATCACGCGAATCGAAGGGCATATTGCCGCGTTCGAAATCTTGACTTAACTTGCATGCTTATTCGCCGCGCGCTTGc                                              >  1:6945548/1‑93 (MQ=255)

                                           aTCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGc                                              <  1:7878052/93‑1 (MQ=255)

                                            tCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCGGAGCGTTTGCg                                             >  1:778628/1‑93 (MQ=255)

                                            tCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCg                                             >  2:2111542/1‑93 (MQ=255)

                                                ggCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGc                                         >  1:8303607/1‑93 (MQ=255)

                                                  ccACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCt                                       <  2:1022394/93‑1 (MQ=255)

                                                    aCGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgc                                     <  1:4524629/93‑1 (MQ=255)

                                                    aCGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgc                                     >  1:9239218/1‑93 (MQ=255)

                                                    aCGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgc                                     <  2:8564053/93‑1 (MQ=255)

                                                     cGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgca                                    <  1:3043211/93‑1 (MQ=255)

                                                        ttttATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTgcagca                                 >  1:2125578/1‑93 (MQ=255)

                                                          ttATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATc                               <  2:1144831/93‑1 (MQ=255)

                                                           tATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCt                              <  2:9553686/93‑1 (MQ=255)

                                                           tATCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCt                              <  1:6087444/93‑1 (MQ=255)

                                                            ttCACGCGGATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTg                             <  2:2964329/92‑1 (MQ=255)

                                                            aTCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTg                             <  2:2209349/93‑1 (MQ=255)

                                                            aTCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTg                             <  1:8228497/93‑1 (MQ=255)

                                                            aTCACGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTg                             >  2:3965232/1‑93 (MQ=255)

                                                               aCGCGAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGt                          >  1:8752673/1‑93 (MQ=255)

                                                                cgcgAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTa                         <  2:3612633/93‑1 (MQ=255)

                                                                 gcgAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTaa                        >  1:10040165/1‑93 (MQ=255)

                                                                 gcgAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTaa                        <  1:3425901/93‑1 (MQ=255)

                                                                 gcgAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTaa                        <  1:3467755/93‑1 (MQ=255)

                                                                 gcgAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTaa                        >  2:5991971/1‑93 (MQ=255)

                                                                  cgAATCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAAt                       <  1:4376457/93‑1 (MQ=255)

                                                                  ccaaTCGAAGCGCATTTTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTGCTTCCCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAAt                       <  2:8725896/91‑1 (MQ=255)

                                                                    aaTCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTa                     >  1:1482776/1‑93 (MQ=255)

                                                                     aTCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTAc                    <  2:1512689/93‑1 (MQ=255)

                                                                      tCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTAcc                   >  2:4145832/1‑93 (MQ=255)

                                                                      tCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTAcc                   >  1:1819895/1‑93 (MQ=255)

                                                                      tCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTAcc                   <  1:617198/93‑1 (MQ=255)

                                                                      tCGAAGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTAcc                   >  1:2749688/1‑93 (MQ=255)

                                                                        taaGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGc                 <  1:9993208/92‑1 (MQ=255)

                                                                         aaGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGcc                <  2:1949379/93‑1 (MQ=255)

                                                                         aaGCGCATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGcc                <  2:5210758/93‑1 (MQ=255)

                                                                           gcgcATATTGCCGCGTGCGAAATCTTTACTTAACTTCGATGCTTCGTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGGAATTACCGCctg              >  2:8977563/1‑93 (MQ=255)

                                                                            cgcATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCctgc             <  2:283293/93‑1 (MQ=255)

                                                                              cATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCctgctg           >  1:8446205/1‑93 (MQ=255)

                                                                              cATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCctgctg           >  2:1830412/1‑93 (MQ=255)

                                                                              cATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCctgctg           >  1:6673883/1‑93 (MQ=255)

                                                                              cATATTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGCAATTACCGCctgctg           >  2:5045221/1‑93 (MQ=255)

                                                                               atatTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTgg          <  1:3548286/93‑1 (MQ=255)

                                                                                tatTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGa         >  2:735238/1‑93 (MQ=255)

                                                                                tatTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGa         >  1:5463183/1‑93 (MQ=255)

                                                                                tatTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGa         >  1:3163714/1‑93 (MQ=255)

                                                                                 atTGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGAt        >  1:1249092/1‑93 (MQ=255)

                                                                                  ttGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGAtt       >  1:4798875/1‑93 (MQ=255)

                                                                                  ttGCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGAtt       >  1:531032/1‑93 (MQ=255)

                                                                                    gCCGCGTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTg     >  2:6547595/1‑93 (MQ=255)

                                                                                      cgcgTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTgcg   <  2:6782454/93‑1 (MQ=255)

                                                                                      cgcgTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTgcg   >  2:175409/1‑93 (MQ=255)

                                                                                       gcgTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTgcgc  >  1:5622490/1‑93 (MQ=255)

                                                                                       gcgTTCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTgcgc  >  1:8031290/1‑93 (MQ=255)

CTGATGGAAGAAATCAGCAAGTTTTTGCGGCGTCAGCAGTTTTATCTGGGCCACGATTTTATCACGCGAATCGAAGCGCATATTGCCGCGATCGAAATCTTTACTTAACTTCGATGCTTCTTCGCCGAGCGTTTGCGGTGCCTGCAGCATCTGGGTAATTACCGCCTGCTGGATTTGCGC  >  NC_000913/2954174‑2954353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`